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Saba Valadkhan, Ph.D. - Publications

Affiliations: 
2003 Columbia University, New York, NY 
Area:
mRNA processing
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28 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Gooding AJ, Parker KA, Valadkhan S, Schiemann WP. The IncRNA BORG: A novel inducer of TNBC metastasis, chemoresistance, and disease recurrence. Journal of Cancer Metastasis and Treatment. 5. PMID 31435529 DOI: 10.20517/2394-4722.2019.11  0.322
2018 Valadkhan S, Fortes P. Regulation of the Interferon Response by lncRNAs in HCV Infection. Frontiers in Microbiology. 9: 181. PMID 29503633 DOI: 10.3389/Fmicb.2018.00181  0.341
2015 Valadkhan S, Valencia-Hipólito A. lncRNAs in Stress Response. Current Topics in Microbiology and Immunology. PMID 26658944 DOI: 10.1007/82_2015_489  0.362
2015 Valadkhan S, Gunawardane LS. lncRNA-mediated regulation of the interferon response. Virus Research. PMID 26474526 DOI: 10.1016/J.Virusres.2015.09.023  0.378
2014 Kambara H, Gunawardane L, Zebrowski E, Kostadinova L, Jobava R, Krokowski D, Hatzoglou M, Anthony DD, Valadkhan S. Regulation of Interferon-Stimulated Gene BST2 by a lncRNA Transcribed from a Shared Bidirectional Promoter. Frontiers in Immunology. 5: 676. PMID 25688240 DOI: 10.3389/Fimmu.2014.00676  0.436
2014 Kambara H, Niazi F, Kostadinova L, Moonka DK, Siegel CT, Post AB, Carnero E, Barriocanal M, Fortes P, Anthony DD, Valadkhan S. Negative regulation of the interferon response by an interferon-induced long non-coding RNA. Nucleic Acids Research. 42: 10668-80. PMID 25122750 DOI: 10.1093/Nar/Gku713  0.411
2014 Zhang B, Gunawardane L, Niazi F, Jahanbani F, Chen X, Valadkhan S. A novel RNA motif mediates the strict nuclear localization of a long noncoding RNA. Molecular and Cellular Biology. 34: 2318-29. PMID 24732794 DOI: 10.1128/Mcb.01673-13  0.515
2013 Valadkhan S. The role of snRNAs in spliceosomal catalysis. Progress in Molecular Biology and Translational Science. 120: 195-228. PMID 24156945 DOI: 10.1016/B978-0-12-381286-5.00006-8  0.59
2013 Valadkhan S, Gunawardane LS. Role of small nuclear RNAs in eukaryotic gene expression. Essays in Biochemistry. 54: 79-90. PMID 23829528 DOI: 10.1042/Bse0540079  0.586
2012 Niazi F, Valadkhan S. Computational analysis of functional long noncoding RNAs reveals lack of peptide-coding capacity and parallels with 3' UTRs. Rna (New York, N.Y.). 18: 825-43. PMID 22361292 DOI: 10.1261/Rna.029520.111  0.508
2011 Valadkhan S. A snRNP's ordered path to maturity. Genes & Development. 25: 1563-7. PMID 21828266 DOI: 10.1101/Gad.17311211  0.349
2011 Jaladat Y, Zhang B, Mohammadi A, Valadkhan S. Splicing of an intervening sequence by protein-free human snRNAs. Rna Biology. 8: 372-7. PMID 21445000 DOI: 10.4161/Rna.8.3.15386  0.467
2010 Valadkhan S, Jaladat Y. The spliceosomal proteome: at the heart of the largest cellular ribonucleoprotein machine. Proteomics. 10: 4128-41. PMID 21080498 DOI: 10.1002/Pmic.201000354  0.53
2010 Lee C, Jaladat Y, Mohammadi A, Sharifi A, Geisler S, Valadkhan S. Metal binding and substrate positioning by evolutionarily invariant U6 sequences in catalytically active protein-free snRNAs. Rna (New York, N.Y.). 16: 2226-38. PMID 20826700 DOI: 10.1261/Rna.2170910  0.557
2010 Valadkhan S. Role of the snRNAs in spliceosomal active site. Rna Biology. 7: 345-53. PMID 20458185 DOI: 10.4161/Rna.7.3.12089  0.577
2010 Valadkhan S, Nilsen TW. Reprogramming of the non-coding transcriptome during brain development Journal of Biology. 9. PMID 20156321 DOI: 10.1186/Jbiol197  0.356
2009 Valadkhan S, Mohammadi A, Jaladat Y, Geisler S. Protein-free small nuclear RNAs catalyze a two-step splicing reaction. Proceedings of the National Academy of Sciences of the United States of America. 106: 11901-6. PMID 19549866 DOI: 10.1073/Pnas.0902020106  0.591
2009 Valadkhan S, Manley JL. The use of simple model systems to study spliceosomal catalysis. Rna (New York, N.Y.). 15: 4-7. PMID 19029305 DOI: 10.1261/Rna.1425809  0.567
2007 Valadkhan S, Mohammadi A, Wachtel C, Manley JL. Protein-free spliceosomal snRNAs catalyze a reaction that resembles the first step of splicing. Rna (New York, N.Y.). 13: 2300-11. PMID 17940139 DOI: 10.1261/Rna.626207  0.627
2007 Valadkhan S. The spliceosome: caught in a web of shifting interactions. Current Opinion in Structural Biology. 17: 310-5. PMID 17574835 DOI: 10.1016/J.Sbi.2007.05.001  0.342
2007 Valadkhan S. The spliceosome: a ribozyme at heart? Biological Chemistry. 388: 693-7. PMID 17570821 DOI: 10.1515/Bc.2007.080  0.573
2005 Valadkhan S. snRNAs as the catalysts of pre-mRNA splicing. Current Opinion in Chemical Biology. 9: 603-8. PMID 16242989 DOI: 10.1016/J.Cbpa.2005.10.008  0.548
2003 Valadkhan S, Manley JL. Characterization of the catalytic activity of U2 and U6 snRNAs. Rna (New York, N.Y.). 9: 892-904. PMID 12810922 DOI: 10.1261/Rna.5440303  0.638
2002 Valadkhan S, Manley JL. Intrinsic metal binding by a spliceosomal RNA. Nature Structural Biology. 9: 498-9. PMID 12080335 DOI: 10.1038/Nsb0702-498  0.551
2002 Valadkhan S, Manley JL. Erratum: Intrinsic metal binding by a spliceosomal RNA Nature Structural & Molecular Biology. 9: 711-711. DOI: 10.1038/Nsb0902-711B  0.532
2001 Valadkhan S, Manley JL. Splicing-related catalysis by protein-free snRNAs. Nature. 413: 701-7. PMID 11607023 DOI: 10.1038/35099500  0.661
2000 Valadkhan S, Manley JL. A tertiary interaction detected in a human U2-U6 snRNA complex assembled in vitro resembles a genetically proven interaction in yeast. Rna (New York, N.Y.). 6: 206-19. PMID 10688360 DOI: 10.1017/S1355838200992197  0.619
1998 Sun JS, Valadkhan S, Manley JL. A UV-crosslinkable interaction in human U6 snRNA. Rna (New York, N.Y.). 4: 489-97. PMID 9582092 DOI: 10.1017/S1355838298980141  0.545
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