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Zev D. Bryant, Ph.D. - Publications

Affiliations: 
Stanford University, Palo Alto, CA 
 2003 University of California, Berkeley, Berkeley, CA, United States 
Area:
Bioengineering, Structural Biology
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54 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Galvin CJ, Hobson M, Meng JX, Ierokomos A, Ivanov IE, Berger JM, Bryant Z. Single-molecule dynamics of DNA gyrase in evolutionarily distant bacteria Mycobacterium tuberculosis and E. coli. The Journal of Biological Chemistry. 103003. PMID 36775125 DOI: 10.1016/j.jbc.2023.103003  0.314
2021 Ruijgrok PV, Ghosh RP, Zemsky S, Nakamura M, Gong R, Ning L, Chen R, Vachharajani VT, Chu AE, Anand N, Eguchi RR, Huang PS, Lin MZ, Alushin GM, Liphardt JT, ... Bryant Z, et al. Optical control of fast and processive engineered myosins in vitro and in living cells. Nature Chemical Biology. PMID 33603247 DOI: 10.1038/s41589-021-00740-7  0.657
2020 Ivanov IE, Wright AV, Cofsky JC, Aris KDP, Doudna JA, Bryant Z. Cas9 interrogates DNA in discrete steps modulated by mismatches and supercoiling. Proceedings of the National Academy of Sciences of the United States of America. PMID 32123105 DOI: 10.1073/Pnas.1913445117  0.415
2020 Hobson MJ, Bryant Z, Berger JM. Modulated control of DNA supercoiling balance by the DNA-wrapping domain of bacterial gyrase. Nucleic Acids Research. PMID 31950157 DOI: 10.1093/Nar/Gkz1230  0.42
2020 Iino R, Kinbara K, Bryant Z. Introduction: Molecular Motors. Chemical Reviews. 120: 1-4. PMID 31910626 DOI: 10.1021/Acs.Chemrev.9B00819  0.337
2019 Ivanov IE, Bryant Z. Multi-parameter measurements of conformational dynamics in nucleic acids and nucleoprotein complexes. Methods (San Diego, Calif.). 169: 69-77. PMID 31228549 DOI: 10.1016/J.Ymeth.2019.06.019  0.349
2019 Ruijgrok PV, Ghosh RP, Nakamura M, Zemsky S, Chen R, Vachharajani V, Liphardt JT, Bryant Z. Optical Control of Fast and Processive Engineered Myosins In Vitro and in Living Cells Biophysical Journal. 116. DOI: 10.1016/J.Bpj.2018.11.1410  0.633
2018 Acharya BR, Nestor-Bergmann A, Liang X, Gupta S, Duszyc K, Gauquelin E, Gomez GA, Budnar S, Marcq P, Jensen OE, Bryant Z, Yap AS. A Mechanosensitive RhoA Pathway that Protects Epithelia against Acute Tensile Stress. Developmental Cell. PMID 30318244 DOI: 10.1016/J.Devcel.2018.09.016  0.301
2018 Basu A, Hobson M, Lebel P, Fernandes LE, Tretter EM, Berger JM, Bryant Z. Dynamic coupling between conformations and nucleotide states in DNA gyrase. Nature Chemical Biology. PMID 29662209 DOI: 10.1038/S41589-018-0037-0  0.467
2018 Kaplan L, Ierokomos A, Chowdary P, Bryant Z, Cui B. Rotation of endosomes demonstrates coordination of molecular motors during axonal transport. Science Advances. 4: e1602170. PMID 29536037 DOI: 10.1126/Sciadv.1602170  0.349
2018 Omabegho T, Gurel PS, Cheng CY, Kim LY, Ruijgrok PV, Das R, Alushin GM, Bryant Z. Publisher Correction: Controllable molecular motors engineered from myosin and RNA. Nature Nanotechnology. PMID 29500397 DOI: 10.1038/S41565-017-0028-4  0.329
2018 Ruijgrok PV, Ghosh RP, Nakamura M, Chen R, Vachharajani V, Liphardt J, Bryant Z. Optical Control of Fast and Processive Engineered Myosins: Optimization and Characterization in Vitro and in Living Cells Biophysical Journal. 114. DOI: 10.1016/J.Bpj.2017.11.1789  0.627
2017 Ivanov IE, Lebel P, Oberstrass FC, Starr CH, Parente AC, Ierokomos A, Bryant Z. Multimodal Measurements of Single-Molecule Dynamics Using FluoRBT. Biophysical Journal. PMID 29248150 DOI: 10.1016/J.Bpj.2017.11.017  0.456
2017 Gurel PS, Kim LY, Ruijgrok PV, Omabegho T, Bryant Z, Alushin GM. Cryo-EM structures reveal specialization at the myosin VI-actin interface and a mechanism of force sensitivity. Elife. 6. PMID 29199952 DOI: 10.7554/Elife.31125  0.399
2017 Omabegho T, Gurel PS, Cheng CY, Kim LY, Ruijgrok PV, Das R, Alushin GM, Bryant Z. Controllable molecular motors engineered from myosin and RNA. Nature Nanotechnology. PMID 29109539 DOI: 10.1038/S41565-017-0005-Y  0.421
2017 Gurel PS, Kim LY, Ruijgrok PV, Omabegho T, Bryant Z, Alushin GM. Author response: Cryo-EM structures reveal specialization at the myosin VI-actin interface and a mechanism of force sensitivity Elife. DOI: 10.7554/Elife.31125.058  0.317
2017 Ivanov IE, Lebel P, Oberstrass FC, Bryant Z. FluoRBT: A Multimodal Method for Investigating Single-Molecule Dynamics Biophysical Journal. 112: 299. DOI: 10.1016/J.Bpj.2016.11.1618  0.424
2017 Todd D, Yadav V, Ruijgrok P, Bryant Z, Ross J. Trajectories of Gliding Filaments on Optically Patterned Myosin Surfaces Biophysical Journal. 112: 268a. DOI: 10.1016/J.Bpj.2016.11.1455  0.372
2016 Basu A, Parente AC, Bryant Z. Structural Dynamics and Mechanochemical Coupling in DNA Gyrase. Journal of Molecular Biology. 428: 1833-45. PMID 27016205 DOI: 10.1016/J.Jmb.2016.03.016  0.489
2016 Kim LY, Gurel PS, Omabegho T, Bryant Z, Alushin GM. High-Resolution Structural Insight into the Myosin VI-F-Actin Interface Biophysical Journal. 110: 22a. DOI: 10.1016/J.Bpj.2015.11.178  0.408
2014 Nakamura M, Chen L, Howes SC, Schindler TD, Nogales E, Bryant Z. Remote control of myosin and kinesin motors using light-activated gearshifting. Nature Nanotechnology. 9: 693-7. PMID 25086603 DOI: 10.1038/Nnano.2014.147  0.435
2014 Lebel P, Basu A, Oberstrass FC, Tretter EM, Bryant Z. Gold rotor bead tracking for high-speed measurements of DNA twist, torque and extension. Nature Methods. 11: 456-62. PMID 24562422 DOI: 10.1038/Nmeth.2854  0.438
2014 Nakamura M, Chen L, Bryant Z. Remote Control of Diverse Cytoskeletal Motors using Light-Activated Gearshifting Biophysical Journal. 106. DOI: 10.1016/J.Bpj.2013.11.1020  0.422
2013 Schindler TD, Chen L, Lebel P, Nakamura M, Bryant Z. Engineering myosins for long-range transport on actin filaments. Nature Nanotechnology. 9: 33-8. PMID 24240432 DOI: 10.1038/Nnano.2013.229  0.446
2013 Cipriano DJ, Jung J, Vivona S, Fenn TD, Brunger AT, Bryant Z. Processive ATP-driven substrate disassembly by the N-ethylmaleimide-sensitive factor (NSF) molecular machine. The Journal of Biological Chemistry. 288: 23436-45. PMID 23775070 DOI: 10.1074/Jbc.M113.476705  0.39
2013 Oberstrass FC, Fernandes LE, Lebel P, Bryant Z. Torque spectroscopy of DNA: base-pair stability, boundary effects, backbending, and breathing dynamics. Physical Review Letters. 110: 178103-178103. PMID 23679785 DOI: 10.1103/Physrevlett.110.178103  0.411
2013 Nakamura M, Bryant Z. Remote Control of Myosin Speed and Directionality using Light-Activated Gear-Shifting Biophysical Journal. 104. DOI: 10.1016/J.Bpj.2012.11.3749  0.444
2013 Lebel PM, Bryant Z. High-Speed Measurements of Twist, Torque, and Extension using AuRBT: Method and Applications to DNA Physics and Nucleoprotein Dynamics Biophysical Journal. 104. DOI: 10.1016/J.Bpj.2012.11.018  0.376
2012 Bryant Z, Oberstrass FC, Basu A. Recent developments in single-molecule DNA mechanics. Current Opinion in Structural Biology. 22: 304-12. PMID 22658779 DOI: 10.1016/J.Sbi.2012.04.007  0.457
2012 Basu A, Schoeffler AJ, Berger JM, Bryant Z. ATP binding controls distinct structural transitions of Escherichia coli DNA gyrase in complex with DNA. Nature Structural & Molecular Biology. 19: 538-46, S1. PMID 22484318 DOI: 10.1038/Nsmb.2278  0.483
2012 Oberstrass FC, Fernandes LE, Bryant Z. Torque measurements reveal sequence-specific cooperative transitions in supercoiled DNA Proceedings of the National Academy of Sciences of the United States of America. 109: 6106-6111. PMID 22474350 DOI: 10.1073/Pnas.1113532109  0.431
2012 Chen L, Nakamura M, Schindler TD, Parker D, Bryant Z. Engineering controllable bidirectional molecular motors based on myosin. Nature Nanotechnology. 7: 252-6. PMID 22343382 DOI: 10.1038/Nnano.2012.19  0.444
2012 Nakamura M, Bryant Z. Optical Control of Speed and Directionality in Engineered Myosin Motors Biophysical Journal. 102: 5-8. DOI: 10.1016/J.Bpj.2011.11.3096  0.444
2012 Schindler TD, Bryant Z. Processivity Determinants of Engineered Myosins Biophysical Journal. 102: 568. DOI: 10.1016/J.Bpj.2011.11.3095  0.423
2012 Oberstrass FC, Fernandes LE, Bryant Z. Torque Spectroscopy of Sequence-Dependent Structural Transitions in DNA Biophysical Journal. 102. DOI: 10.1016/J.Bpj.2011.11.2299  0.416
2011 Elting MW, Bryant Z, Liao JC, Spudich JA. Detailed tuning of structure and intramolecular communication are dispensable for processive motion of myosin VI. Biophysical Journal. 100: 430-9. PMID 21244839 DOI: 10.1016/J.Bpj.2010.11.045  0.667
2011 Chen L, Nakamura M, Schindler T, Bryant Z. Engineering Controllable Myosin Motors for Bidirectional Transport Biophysical Journal. 100: 1-9. DOI: 10.1016/J.Bpj.2010.12.857  0.445
2011 Oberstrass FC, Fernandes L, Bryant Z. Sequence Dependent Structural Transitions in DNA Induced by Torque Biophysical Journal. 100. DOI: 10.1016/J.Bpj.2010.12.613  0.444
2010 Dunn AR, Chuan P, Bryant Z, Spudich JA. Contribution of the myosin VI tail domain to processive stepping and intramolecular tension sensing. Proceedings of the National Academy of Sciences of the United States of America. 107: 7746-50. PMID 20385849 DOI: 10.1016/J.Bpj.2009.12.1242  0.607
2010 Elting MW, Bryant ZD, Liao J, Spudich JA. Probing Myosin-VI Processivity using Artificial Lever Arms Biophysical Journal. 98: 723a. DOI: 10.1016/J.Bpj.2009.12.3962  0.67
2010 Chen L, Nakamura M, Schindler T, Bryant ZD. Engineering A Controllable Bidirectional Molecular Motor Biophysical Journal. 98: 2-9. DOI: 10.1016/J.Bpj.2009.12.1243  0.396
2010 Basu A, Koslover L, Schoeffler A, Tretter E, Berger J, Spakowitz AJ, Bryant ZD. Single Molecule Analysis of Substeps in the Mechanochemical Cycle of DNA Gyrase Biophysical Journal. 98: 221a. DOI: 10.1016/J.Bpj.2009.12.1192  0.498
2010 Bryant Z. Physics and Engineering of Biological Molecular Motors Biophysical Journal. 98. DOI: 10.1016/J.Bpj.2009.12.1118  0.344
2009 Parker D, Bryant Z, Delp SL. Coarse-Grained Structural Modeling of Molecular Motors Using Multibody Dynamics. Cellular and Molecular Bioengineering. 2: 366-374. PMID 20428469 DOI: 10.1007/S12195-009-0084-4  0.375
2009 Liao JC, Elting MW, Delp SL, Spudich JA, Bryant Z. Engineered myosin VI motors reveal minimal structural determinants of directionality and processivity. Journal of Molecular Biology. 392: 862-7. PMID 19631216 DOI: 10.1016/J.Jmb.2009.07.046  0.688
2009 Chuan P, Dunn AR, Bryant Z, Spudich JA. Structural and Mechanistic Determinants of Myosin VI Processivity and Anchoring Biophysical Journal. 96: 142a. DOI: 10.1016/J.Bpj.2008.12.3883  0.543
2007 Nöllmann M, Stone MD, Bryant Z, Gore J, Crisona NJ, Hong SC, Mitelheiser S, Maxwell A, Bustamante C, Cozzarelli NR. Multiple modes of Escherichia coli DNA gyrase activity revealed by force and torque. Nature Structural & Molecular Biology. 14: 264-71. PMID 17334374 DOI: 10.1038/Nsmb1213  0.712
2007 Bryant Z, Altman D, Spudich JA. The power stroke of myosin VI and the basis of reverse directionality. Proceedings of the National Academy of Sciences of the United States of America. 104: 772-7. PMID 17182734 DOI: 10.1073/Pnas.0610144104  0.644
2006 Gore J, Bryant Z, Nöllmann M, Le MU, Cozzarelli NR, Bustamante C. DNA overwinds when stretched. Nature. 442: 836-9. PMID 16862122 DOI: 10.1038/Nature04974  0.636
2006 Gore J, Bryant Z, Stone MD, Nöllmann M, Cozzarelli NR, Bustamante C. Mechanochemical analysis of DNA gyrase using rotor bead tracking. Nature. 439: 100-4. PMID 16397501 DOI: 10.1038/Nature04319  0.649
2003 Bryant Z, Stone MD, Gore J, Smith SB, Cozzarelli NR, Bustamante C. Structural transitions and elasticity from torque measurements on DNA. Nature. 424: 338-41. PMID 12867987 DOI: 10.1038/Nature01810  0.66
2003 Stone MD, Bryant Z, Crisona NJ, Smith SB, Vologodskii A, Bustamante C, Cozzarelli NR. Chirality sensing by Escherichia coli topoisomerase IV and the mechanism of type II topoisomerases. Proceedings of the National Academy of Sciences of the United States of America. 100: 8654-9. PMID 12857958 DOI: 10.1073/Pnas.1133178100  0.572
2003 Bustamante C, Bryant Z, Smith SB. Ten years of tension: single-molecule DNA mechanics. Nature. 421: 423-7. PMID 12540915 DOI: 10.1038/Nature01405  0.595
2002 Parak WJ, Gerion D, Zanchet D, Woerz AS, Pellegrino T, Micheel C, Williams SC, Seitz M, Bruehl RE, Bryant Z, Bustamante C, Bertozzi CR, Alivisatos AP. Conjugation of DNA to silanized colloidal semiconductor nanocrystalline quantum dots Chemistry of Materials. 14: 2113-2119. DOI: 10.1021/Cm0107878  0.513
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