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James R. Iben, Ph.D. - Publications

Affiliations: 
2007 Johns Hopkins University, Baltimore, MD 
Area:
RNA folding
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25 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Aksenova V, Smith A, Lee H, Bhat P, Esnault C, Chen S, Iben J, Kaufhold R, Yau KC, Echeverria C, Fontoura B, Arnaoutov A, Dasso M. Nucleoporin TPR is an integral component of the TREX-2 mRNA export pathway. Nature Communications. 11: 4577. PMID 32917881 DOI: 10.1038/S41467-020-18266-2  0.376
2020 Mattijssen S, Iben JR, Li T, Coon SL, Maraia RJ. Single molecule poly(A) tail-seq shows LARP4 opposes deadenylation throughout mRNA lifespan with most impact on short tails. Elife. 9. PMID 32744499 DOI: 10.7554/Elife.59186  0.334
2020 Cougnoux A, Yerger JC, Fellmeth M, Serra-Vinardell J, Martin K, Navid F, Iben J, Wassif CA, Cawley NX, Porter FD. Single Cell Transcriptome Analysis of Niemann-Pick Disease, Type C1 Cerebella. International Journal of Molecular Sciences. 21. PMID 32731618 DOI: 10.3390/Ijms21155368  0.307
2019 Martin KB, Williams IM, Cluzeau CV, Cougnoux A, Dale RK, Iben JR, Cawley NX, Wassif CA, Porter FD. Identification of Novel Pathways Associated with Patterned Cerebellar Purkinje Neuron Degeneration in Niemann-Pick Disease, Type C1. International Journal of Molecular Sciences. 21. PMID 31906248 DOI: 10.3390/Ijms21010292  0.3
2018 Patterson-West J, James TD, Fernández-Coll L, Iben JR, Moon K, Knipling L, Cashel M, Hinton DM. The Global Regulator DksA Reduces Transcription during T4 Infection. Viruses. 10. PMID 29882792 DOI: 10.3390/V10060308  0.314
2017 Suzuki S, Iben JR, Coon SL, Kino T. SIRT1 is a transcriptional enhancer of the glucocorticoid receptor acting independently to its deacetylase activity. Molecular and Cellular Endocrinology. PMID 28923345 DOI: 10.1016/J.Mce.2017.09.012  0.313
2017 Mattijssen S, Arimbasseri AG, Iben JR, Gaidamakov S, Lee J, Hafner M, Maraia RJ. LARP4 mRNA codon-tRNA match contributes to LARP4 activity for ribosomal protein mRNA poly(A) tail length protection. Elife. 6. PMID 28895529 DOI: 10.7554/Elife.28889  0.37
2017 Blewett NH, Iben JR, Gaidamakov S, Maraia RJ. La deletion from mouse brain alters pre-tRNA metabolism and accumulation of pre-5.8S rRNA, with neuron death and reactive astrocytosis. Molecular and Cellular Biology. PMID 28223366 DOI: 10.1128/Mcb.00588-16  0.328
2017 Mattijssen S, Arimbasseri AG, Iben JR, Gaidamakov S, Lee J, Hafner M, Maraia RJ. Author response: LARP4 mRNA codon-tRNA match contributes to LARP4 activity for ribosomal protein mRNA poly(A) tail length protection Elife. DOI: 10.7554/Elife.28889.020  0.323
2016 Arimbasseri AG, Iben J, Wei FY, Rijal K, Tomizawa K, Hafner M, Maraia RJ. Evolving specificity of tRNA 3-methyl-cytidine-32 (m3C32) modification: a subset of tRNAsSer requires N6-isopentenylation of A37. Rna (New York, N.Y.). PMID 27354703 DOI: 10.1261/Rna.056259.116  0.323
2016 Gebert C, Rong Q, Jeong S, Iben J, Pfeifer K. H19ICR mediated transcriptional silencing does not require target promoter methylation. Biochemical and Biophysical Research Communications. PMID 27178213 DOI: 10.1016/J.Bbrc.2016.05.042  0.328
2016 Lamichhane TN, Arimbasseri AG, Rijal K, Iben JR, Wei FY, Tomizawa K, Maraia RJ. Lack of tRNA-i6A modification causes mitochondrial-like metabolic deficiency in S. pombe by limiting activity of cytosolic tRNATyr, not mito-tRNA. Rna (New York, N.Y.). PMID 26857223 DOI: 10.1261/Rna.054064.115  0.319
2016 Gore AV, Athans B, Iben JR, Johnson K, Russanova V, Castranova D, Pham VN, Butler MG, Williams-Simons L, Nichols JT, Bresciani E, Feldman B, Kimmel CB, Liu PP, Weinstein BM. Epigenetic regulation of hematopoiesis by DNA methylation. Elife. 5. PMID 26814702 DOI: 10.7554/Elife.11813  0.311
2015 Arimbasseri AG, Blewett NH, Iben JR, Lamichhane TN, Cherkasova V, Hafner M, Maraia RJ. RNA Polymerase III Output Is Functionally Linked to tRNA Dimethyl-G26 Modification. Plos Genetics. 11: e1005671. PMID 26720005 DOI: 10.1371/Journal.Pgen.1005671  0.361
2015 Singh PK, Plumb MR, Ferris AL, Iben JR, Wu X, Fadel HJ, Luke BT, Esnault C, Poeschla EM, Hughes SH, Kvaratskhelia M, Levin HL. LEDGF/p75 interacts with mRNA splicing factors and targets HIV-1 integration to highly spliced genes. Genes & Development. 29: 2287-97. PMID 26545813 DOI: 10.1101/Gad.267609.115  0.328
2015 Hickey A, Esnault C, Majumdar A, Chatterjee AG, Iben JR, McQueen PG, Yang AX, Mizuguchi T, Grewal SI, Levin HL. Single Nucleotide Specific Targeting of the Tf1 Retrotransposon Promoted by the DNA-Binding Protein Sap1 of Schizosaccharomyces pombe. Genetics. PMID 26358720 DOI: 10.1534/Genetics.115.181602  0.322
2014 Cole HA, Ocampo J, Iben JR, Chereji RV, Clark DJ. Heavy transcription of yeast genes correlates with differential loss of histone H2B relative to H4 and queued RNA polymerases. Nucleic Acids Research. 42: 12512-22. PMID 25348398 DOI: 10.1093/Nar/Gku1013  0.326
2014 Maraia RJ, Iben JR. Different types of secondary information in the genetic code. Rna (New York, N.Y.). 20: 977-84. PMID 24935971 DOI: 10.1261/Rna.044115.113  0.307
2014 Iben JR, Maraia RJ. tRNA gene copy number variation in humans. Gene. 536: 376-84. PMID 24342656 DOI: 10.1016/J.Gene.2013.11.049  0.345
2013 Nagarajavel V, Iben JR, Howard BH, Maraia RJ, Clark DJ. Global 'bootprinting' reveals the elastic architecture of the yeast TFIIIB-TFIIIC transcription complex in vivo. Nucleic Acids Research. 41: 8135-43. PMID 23856458 DOI: 10.1093/Nar/Gkt611  0.357
2013 Lamichhane TN, Blewett NH, Crawford AK, Cherkasova VA, Iben JR, Begley TJ, Farabaugh PJ, Maraia RJ. Lack of tRNA modification isopentenyl-A37 alters mRNA decoding and causes metabolic deficiencies in fission yeast. Molecular and Cellular Biology. 33: 2918-29. PMID 23716598 DOI: 10.1128/Mcb.00278-13  0.382
2012 Iben JR, Maraia RJ. tRNAomics: tRNA gene copy number variation and codon use provide bioinformatic evidence of a new anticodon:codon wobble pair in a eukaryote. Rna (New York, N.Y.). 18: 1358-72. PMID 22586155 DOI: 10.1261/Rna.032151.111  0.332
2011 Iben JR, Mazeika JK, Hasson S, Rijal K, Arimbasseri AG, Russo AN, Maraia RJ. Point mutations in the Rpb9-homologous domain of Rpc11 that impair transcription termination by RNA polymerase III. Nucleic Acids Research. 39: 6100-13. PMID 21450810 DOI: 10.1093/Nar/Gkr182  0.316
2011 Iben JR, Epstein JA, Bayfield MA, Bruinsma MW, Hasson S, Bacikova D, Ahmad D, Rockwell D, Kittler EL, Zapp ML, Maraia RJ. Comparative whole genome sequencing reveals phenotypic tRNA gene duplication in spontaneous Schizosaccharomyces pombe La mutants. Nucleic Acids Research. 39: 4728-42. PMID 21317186 DOI: 10.1093/Nar/Gkr066  0.37
2008 Iben JR, Draper DE. Specific interactions of the L10(L12)4 ribosomal protein complex with mRNA, rRNA, and L11. Biochemistry. 47: 2721-31. PMID 18247578 DOI: 10.1021/Bi701838Y  0.488
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