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Gerald Quon, Ph.D. - Publications

Affiliations: 
2012 University of Toronto, Toronto, ON, Canada 
Area:
Computational biology
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27 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Soto DC, Uribe-Salazar JM, Kaya G, Valdarrago R, Sekar A, Haghani NK, Hino K, La GN, Mariano NAF, Ingamells C, Baraban AE, Turner TN, Green ED, Simó S, Quon G, et al. Gene expansions contributing to human brain evolution. Biorxiv : the Preprint Server For Biology. PMID 39386494 DOI: 10.1101/2024.09.26.615256  0.36
2021 Kern C, Wang Y, Xu X, Pan Z, Halstead M, Chanthavixay G, Saelao P, Waters S, Xiang R, Chamberlain A, Korf I, Delany ME, Cheng HH, Medrano JF, Van Eenennaam AL, ... ... Quon G, et al. Functional annotations of three domestic animal genomes provide vital resources for comparative and agricultural research. Nature Communications. 12: 1821. PMID 33758196 DOI: 10.1038/s41467-021-22100-8  0.317
2020 Davies AE, Pargett M, Siebert S, Gillies TE, Choi Y, Tobin SJ, Ram AR, Murthy V, Juliano C, Quon G, Bissell MJ, Albeck JG. Systems-Level Properties of EGFR-RAS-ERK Signaling Amplify Local Signals to Generate Dynamic Gene Expression Heterogeneity. Cell Systems. PMID 32726596 DOI: 10.1016/J.Cels.2020.07.004  0.329
2020 Feizi S, Quon G, Recamonde-Mendoza M, Medard M, Kellis M, Jadbabaie A. Spectral Alignment of Graphs Ieee Transactions On Network Science and Engineering. 7: 1182-1197. DOI: 10.1109/Tnse.2019.2913233  0.704
2019 Li R, Quon G. scBFA: modeling detection patterns to mitigate technical noise in large-scale single-cell genomics data. Genome Biology. 20: 193. PMID 31500668 DOI: 10.1186/S13059-019-1806-0  0.319
2019 Hodge RD, Bakken TE, Miller JA, Smith KA, Barkan ER, Graybuck LT, Close JL, Long B, Johansen N, Penn O, Yao Z, Eggermont J, Höllt T, Levi BP, Shehata SI, ... ... Quon G, et al. Conserved cell types with divergent features in human versus mouse cortex. Nature. PMID 31435019 DOI: 10.1038/S41586-019-1506-7  0.428
2019 Johansen N, Quon G. scAlign: a tool for alignment, integration, and rare cell identification from scRNA-seq data. Genome Biology. 20: 166. PMID 31412909 DOI: 10.1186/S13059-019-1766-4  0.375
2019 Feizi S, Medard M, Quon G, Kellis M, Duffy K. Network Infusion to Infer Information Sources in Networks Ieee Transactions On Network Science and Engineering. 6: 402-417. DOI: 10.1109/Tnse.2018.2854218  0.716
2016 Cui A, Quon G, Rosenberg AM, Yeung RS, Morris Q. Gene Expression Deconvolution for Uncovering Molecular Signatures in Response to Therapy in Juvenile Idiopathic Arthritis. Plos One. 11: e0156055. PMID 27244050 DOI: 10.1371/Journal.Pone.0156055  0.607
2016 Marbach D, Lamparter D, Quon G, Kellis M, Kutalik Z, Bergmann S. Tissue-specific regulatory circuits reveal variable modular perturbations across complex diseases. Nature Methods. PMID 26950747 DOI: 10.1038/Nmeth.3799  0.796
2016 Batmanghelich N, Dalca A, Quon G, Sabuncu M, Golland P. Probabilistic Modeling of Imaging, Genetics and Diagnosis. Ieee Transactions On Medical Imaging. PMID 26886973 DOI: 10.1109/Tmi.2016.2527784  0.352
2015 Claussnitzer M, Dankel SN, Kim KH, Quon G, Meuleman W, Haugen C, Glunk V, Sousa IS, Beaudry JL, Puviindran V, Abdennur NA, Liu J, Svensson PA, Hsu YH, Drucker DJ, et al. FTO Obesity Variant Circuitry and Adipocyte Browning in Humans. The New England Journal of Medicine. 373: 895-907. PMID 26287746 DOI: 10.1056/Nejmoa1502214  0.753
2015 Anghel CV, Quon G, Haider S, Nguyen F, Deshwar AG, Morris QD, Boutros PC. ISOpureR: an R implementation of a computational purification algorithm of mixed tumour profiles. Bmc Bioinformatics. 16: 156. PMID 25972088 DOI: 10.1186/S12859-015-0597-X  0.544
2015 Gjoneska E, Pfenning AR, Mathys H, Quon G, Kundaje A, Tsai LH, Kellis M. Conserved epigenomic signals in mice and humans reveal immune basis of Alzheimer's disease. Nature. 518: 365-9. PMID 25693568 DOI: 10.1038/Nature14252  0.721
2015 Kundaje A, Meuleman W, Ernst J, Bilenky M, Yen A, Heravi-Moussavi A, Kheradpour P, Zhang Z, Wang J, Ziller MJ, Amin V, Whitaker JW, Schultz MD, Ward LD, ... ... Quon G, et al. Integrative analysis of 111 reference human epigenomes. Nature. 518: 317-30. PMID 25693563 DOI: 10.1038/Nature14248  0.429
2015 Anghel CV, Quon G, Haider S, Nguyen F, Deshwar AG, Morris QD, Boutros PC. ISOpureR: An R implementation of a computational purification algorithm of mixed tumour profiles Bmc Bioinformatics. DOI: 10.1186/s12859-015-0597-x  0.438
2013 Lippert C, Quon G, Kang EY, Kadie CM, Listgarten J, Heckerman D. The benefits of selecting phenotype-specific variants for applications of mixed models in genomics. Scientific Reports. 3: 1815. PMID 23657357 DOI: 10.1038/Srep01815  0.37
2013 Quon G, Haider S, Deshwar AG, Cui A, Boutros PC, Morris Q. Computational purification of individual tumor gene expression profiles leads to significant improvements in prognostic prediction. Genome Medicine. 5: 29. PMID 23537167 DOI: 10.1186/Gm433  0.563
2013 Quon G, Lippert C, Heckerman D, Listgarten J. Patterns of methylation heritability in a genome-wide analysis of four brain regions. Nucleic Acids Research. 41: 2095-104. PMID 23303775 DOI: 10.1093/Nar/Gks1449  0.43
2012 Qiao W, Quon G, Csaszar E, Yu M, Morris Q, Zandstra PW. PERT: a method for expression deconvolution of human blood samples from varied microenvironmental and developmental conditions. Plos Computational Biology. 8: e1002838. PMID 23284283 DOI: 10.1371/journal.pcbi.1002838  0.549
2011 Goldenberg A, Mostafavi S, Quon G, Boutros PC, Morris QD. Unsupervised detection of genes of influence in lung cancer using biological networks. Bioinformatics (Oxford, England). 27: 3166-72. PMID 21965819 DOI: 10.1093/Bioinformatics/Btr533  0.675
2011 Deshwar A, Quon G, Morris Q. Computational purification of tumor gene expression data Bmc Bioinformatics. 12. DOI: 10.1186/1471-2105-12-S11-A9  0.502
2011 Quon G, Haider S, Boutros PC, Morris QD. Abstract 4847: Purifying tumor gene expression profiles leads to predictive models of patient outcome Cancer Research. 71: 4847-4847. DOI: 10.1158/1538-7445.Am2011-4847  0.555
2010 Li X, Quon G, Lipshitz HD, Morris Q. Predicting in vivo binding sites of RNA-binding proteins using mRNA secondary structure. Rna (New York, N.Y.). 16: 1096-107. PMID 20418358 DOI: 10.1261/Rna.2017210  0.519
2009 Quon G, Morris Q. ISOLATE: a computational strategy for identifying the primary origin of cancers using high-throughput sequencing. Bioinformatics (Oxford, England). 25: 2882-9. PMID 19542156 DOI: 10.1093/bioinformatics/btp378  0.52
2009 Chan ET, Quon GT, Chua G, Babak T, Trochesset M, Zirngibl RA, Aubin J, Ratcliffe MJ, Wilde A, Brudno M, Morris QD, Hughes TR. Conservation of core gene expression in vertebrate tissues. Journal of Biology. 8: 33. PMID 19371447 DOI: 10.1186/Jbiol130  0.588
2009 Quon G, Teh YW, Chan E, Hughes T, Brudno M, Morris Q. A mixture model for the evolution of gene expression in non-homogeneous datasets Advances in Neural Information Processing Systems 21 - Proceedings of the 2008 Conference. 1297-1304.  0.516
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