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Yvonne M. Bradford, Ph.D. - Publications

Affiliations: 
2006 University of Oregon, Eugene, OR, United States 
Area:
hair cells
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22 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Matentzoglu N, Bello SM, Stefancsik R, Alghamdi SM, Anagnostopoulos AV, Balhoff JP, Balk MA, Bradford YM, Bridges Y, Callahan TJ, Caufield H, Cuzick A, Carmody LC, Caron AR, de Souza V, et al. The Unified Phenotype Ontology (uPheno): A framework for cross-species integrative phenomics. Biorxiv : the Preprint Server For Biology. PMID 39345458 DOI: 10.1101/2024.09.18.613276  0.41
2023 Aleksander SA, Anagnostopoulos AV, Antonazzo G, Arnaboldi V, Attrill H, Becerra A, Bello SM, Blodgett O, Bradford YM, Bult CJ, Cain S, Calvi BR, Carbon S, Chan J, Chen WJ, et al. Updates to the Alliance of Genome Resources Central Infrastructure Alliance of Genome Resources Consortium. Biorxiv : the Preprint Server For Biology. PMID 38045425 DOI: 10.1101/2023.11.20.567935  0.469
2023 Bradford YM, Van Slyke CE, Howe DG, Fashena D, Frazer K, Martin R, Paddock H, Pich C, Ramachandran S, Ruzicka L, Singer A, Taylor R, Tseng WC, Westerfield M. From Multi-Allele Fish to Non-Standard Environments, How ZFIN Assigns Phenotypes, Human Disease Models, and Gene Expression Annotations to Genes. Genetics. PMID 36864549 DOI: 10.1093/genetics/iyad032  0.445
2022 Bradford YM, Van Slyke CE, Ruzicka L, Singer A, Eagle A, Fashena D, Howe DG, Frazer K, Martin R, Paddock H, Pich C, Ramachandran S, Westerfield M. Zebrafish Information Network, the knowledgebase for Danio rerio research. Genetics. PMID 35166825 DOI: 10.1093/genetics/iyac016  0.577
2020 Howe DG, Ramachandran S, Bradford YM, Fashena D, Toro S, Eagle A, Frazer K, Kalita P, Mani P, Martin R, Moxon ST, Paddock H, Pich C, Ruzicka L, Schaper K, et al. The Zebrafish Information Network: major gene page and home page updates. Nucleic Acids Research. PMID 33170210 DOI: 10.1093/nar/gkaa1010  0.519
2019 Shefchek KA, Harris NL, Gargano M, Matentzoglu N, Unni D, Brush M, Keith D, Conlin T, Vasilevsky N, Zhang XA, Balhoff JP, Babb L, Bello SM, Blau H, Bradford Y, et al. The Monarch Initiative in 2019: an integrative data and analytic platform connecting phenotypes to genotypes across species. Nucleic Acids Research. PMID 31701156 DOI: 10.1093/nar/gkz997  0.466
2018 Ruzicka L, Howe DG, Ramachandran S, Toro S, Van Slyke CE, Bradford YM, Eagle A, Fashena D, Frazer K, Kalita P, Mani P, Martin R, Moxon ST, Paddock H, Pich C, et al. The Zebrafish Information Network: new support for non-coding genes, richer Gene Ontology annotations and the Alliance of Genome Resources. Nucleic Acids Research. PMID 30407545 DOI: 10.1093/Nar/Gky1090  0.52
2018 Howe DG, Blake JA, Bradford YM, Bult CJ, Calvi BR, Engel SR, Kadin JA, Kaufman TC, Kishore R, Laulederkind SJF, Lewis SE, Moxon SAT, Richardson JE, Smith C. Model organism data evolving in support of translational medicine. Lab Animal. PMID 30224793 DOI: 10.1038/S41684-018-0150-4  0.549
2018 Van Slyke CE, Bradford YM, Howe DG, Fashena DS, Ramachandran S, Ruzicka L. Using ZFIN: Data Types, Organization, and Retrieval. Methods in Molecular Biology (Clifton, N.J.). 1757: 307-347. PMID 29761463 DOI: 10.1007/978-1-4939-7737-6_11  0.585
2017 Bradford YM, Toro S, Ramachandran S, Ruzicka L, Howe DG, Eagle A, Kalita P, Martin R, Taylor Moxon SA, Schaper K, Westerfield M. Zebrafish Models of Human Disease: Gaining Insight into Human Disease at ZFIN. Ilar Journal. 58: 4-16. PMID 28838067 DOI: 10.1093/Ilar/Ilw040  0.474
2017 Marygold S, Bello S, Bradford Y, Crosby M, Engel S, Kishore R, Laulederkind S, Shimoyama M, Smith C. Defining standards for the annotation and integration of disease relevant data across the model organism databases of the Alliance of Genome Resources (AGR) F1000research. 6. DOI: 10.7490/F1000Research.1113860.1  0.522
2016 Howe DG, Bradford YM, Eagle A, Fashena D, Frazer K, Kalita P, Mani P, Martin R, Moxon ST, Paddock H, Pich C, Ramachandran S, Ruzicka L, Schaper K, Shao X, et al. The Zebrafish Model Organism Database: new support for human disease models, mutation details, gene expression phenotypes and searching. Nucleic Acids Research. PMID 27899582 DOI: 10.1093/Nar/Gkw1116  0.583
2016 Howe DG, Bradford YM, Eagle A, Fashena D, Frazer K, Kalita P, Mani P, Martin R, Moxon ST, Paddock H, Pich C, Ramachandran S, Ruzicka L, Schaper K, Shao X, et al. A scientist's guide for submitting data to ZFIN. Methods in Cell Biology. 135: 451-81. PMID 27443940 DOI: 10.1016/Bs.Mcb.2016.04.010  0.556
2016 Bradford Y, Howe D, Ramachandran S, Toro S, Westerfield M. Curating zebrafish models of human disease at ZFIN F1000research. 5. DOI: 10.7490/F1000Research.1111828.1  0.337
2016 Howe DG, Bradford YM, Eagle A, Fashena D, Frazer K, Kalita P, Mani P, Martin R, Moxon ST, Paddock H, Pich C, Ramachandran S, Ruzicka L, Schaper K, Shao X, et al. A scientist's guide for submitting data to ZFIN Methods in Cell Biology. DOI: 10.1016/bs.mcb.2016.04.010  0.532
2015 Ruzicka L, Bradford YM, Frazer K, Howe DG, Paddock H, Ramachandran S, Singer A, Toro S, Van Slyke CE, Eagle AE, Fashena D, Kalita P, Knight J, Mani P, Martin R, et al. ZFIN, the Zebrafish Model Organism Database: Updates and new directions. Genesis (New York, N.Y. : 2000). PMID 26097180 DOI: 10.1002/Dvg.22868  0.628
2014 Haendel MA, Balhoff JP, Bastian FB, Blackburn DC, Blake JA, Bradford Y, Comte A, Dahdul WM, Dececchi TA, Druzinsky RE, Hayamizu TF, Ibrahim N, Lewis SE, Mabee PM, Niknejad A, et al. Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon. Journal of Biomedical Semantics. 5: 21. PMID 25009735 DOI: 10.1186/2041-1480-5-21  0.489
2014 Van Slyke CE, Bradford YM, Westerfield M, Haendel MA. The zebrafish anatomy and stage ontologies: representing the anatomy and development of Danio rerio. Journal of Biomedical Semantics. 5: 12. PMID 24568621 DOI: 10.1186/2041-1480-5-12  0.472
2013 Howe DG, Bradford YM, Conlin T, Eagle AE, Fashena D, Frazer K, Knight J, Mani P, Martin R, Moxon SA, Paddock H, Pich C, Ramachandran S, Ruef BJ, Ruzicka L, et al. ZFIN, the Zebrafish Model Organism Database: increased support for mutants and transgenics. Nucleic Acids Research. 41: D854-60. PMID 23074187 DOI: 10.1093/Nar/Gks938  0.551
2011 Howe DG, Frazer K, Fashena D, Ruzicka L, Bradford Y, Ramachandran S, Ruef BJ, Van Slyke C, Singer A, Westerfield M. Data extraction, transformation, and dissemination through ZFIN. Methods in Cell Biology. 104: 311-25. PMID 21924170 DOI: 10.1016/B978-0-12-374814-0.00017-3  0.389
2011 Bradford Y, Conlin T, Dunn N, Fashena D, Frazer K, Howe DG, Knight J, Mani P, Martin R, Moxon SA, Paddock H, Pich C, Ramachandran S, Ruef BJ, Ruzicka L, et al. ZFIN: enhancements and updates to the Zebrafish Model Organism Database. Nucleic Acids Research. 39: D822-9. PMID 21036866 DOI: 10.1093/Nar/Gkq1077  0.572
2008 Sprague J, Bayraktaroglu L, Bradford Y, Conlin T, Dunn N, Fashena D, Frazer K, Haendel M, Howe DG, Knight J, Mani P, Moxon SA, Pich C, Ramachandran S, Schaper K, et al. The Zebrafish Information Network: the zebrafish model organism database provides expanded support for genotypes and phenotypes. Nucleic Acids Research. 36: D768-72. PMID 17991680 DOI: 10.1093/Nar/Gkm956  0.567
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