| Year |
Citation |
Score |
| 2024 |
Vestito L, Jacobsen JOB, Walker S, Cipriani V, Harris NL, Haendel MA, Mungall CJ, Robinson P, Smedley D. Efficient reinterpretation of rare disease cases using Exomiser. Npj Genomic Medicine. 9: 65. PMID 39695184 DOI: 10.1038/s41525-024-00456-2 |
0.306 |
|
| 2024 |
Danis D, Bamshad MJ, Bridges Y, Caballero-Oteyza A, Cacheiro P, Carmody LC, Chimirri L, Chong JX, Coleman B, Dalgleish R, Freeman PJ, Graefe ASL, Groza T, Hansen P, Jacobsen JOB, ... ... Haendel MA, et al. A corpus of GA4GH phenopackets: case-level phenotyping for genomic diagnostics and discovery. Hgg Advances. 100371. PMID 39394689 DOI: 10.1016/j.xhgg.2024.100371 |
0.318 |
|
| 2024 |
Matentzoglu N, Bello SM, Stefancsik R, Alghamdi SM, Anagnostopoulos AV, Balhoff JP, Balk MA, Bradford YM, Bridges Y, Callahan TJ, Caufield H, Cuzick A, Carmody LC, Caron AR, de Souza V, ... ... Haendel MA, et al. The Unified Phenotype Ontology (uPheno): A framework for cross-species integrative phenomics. Biorxiv : the Preprint Server For Biology. PMID 39345458 DOI: 10.1101/2024.09.18.613276 |
0.303 |
|
| 2024 |
Danis D, Bamshad MJ, Bridges Y, Cacheiro P, Carmody LC, Chong JX, Coleman B, Dalgleish R, Freeman PJ, Graefe ASL, Groza T, Jacobsen JOB, Klocperk A, Kusters M, Ladewig MS, ... ... Haendel MA, et al. A corpus of GA4GH Phenopackets: case-level phenotyping for genomic diagnostics and discovery. Medrxiv : the Preprint Server For Health Sciences. PMID 38854034 DOI: 10.1101/2024.05.29.24308104 |
0.318 |
|
| 2023 |
Putman TE, Schaper K, Matentzoglu N, Rubinetti VP, Alquaddoomi FS, Cox C, Caufield JH, Elsarboukh G, Gehrke S, Hegde H, Reese JT, Braun I, Bruskiewich RM, Cappelletti L, Carbon S, ... ... Haendel MA, et al. The Monarch Initiative in 2024: an analytic platform integrating phenotypes, genes and diseases across species. Nucleic Acids Research. PMID 38000386 DOI: 10.1093/nar/gkad1082 |
0.329 |
|
| 2023 |
Gargano MA, Matentzoglu N, Coleman B, Addo-Lartey EB, Anagnostopoulos AV, Anderton J, Avillach P, Bagley AM, Bakštein E, Balhoff JP, Baynam G, Bello SM, Berk M, Bertram H, Bishop S, ... ... Haendel MA, et al. The Human Phenotype Ontology in 2024: phenotypes around the world. Nucleic Acids Research. PMID 37953324 DOI: 10.1093/nar/gkad1005 |
0.323 |
|
| 2023 |
Danis D, Jacobsen JOB, Wagner AH, Groza T, Beckwith MA, Rekerle L, Carmody LC, Reese J, Hegde H, Ladewig MS, Seitz B, Munoz-Torres M, Harris NL, Rambla J, Baudis M, ... ... Haendel MA, et al. Phenopacket-tools: Building and validating GA4GH Phenopackets. Plos One. 18: e0285433. PMID 37196000 DOI: 10.1371/journal.pone.0285433 |
0.315 |
|
| 2023 |
Stefancsik R, Balhoff JP, Balk MA, Ball RL, Bello SM, Caron AR, Chesler EJ, de Souza V, Gehrke S, Haendel M, Harris LW, Harris NL, Ibrahim A, Koehler S, Matentzoglu N, et al. The Ontology of Biological Attributes (OBA)-computational traits for the life sciences. Mammalian Genome : Official Journal of the International Mammalian Genome Society. PMID 37076585 DOI: 10.1007/s00335-023-09992-1 |
0.33 |
|
| 2023 |
Stefancsik R, Balhoff JP, Balk MA, Ball R, Bello SM, Caron AR, Chessler E, de Souza V, Gehrke S, Haendel M, Harris LW, Harris NL, Ibrahim A, Koehler S, Matentzoglu N, et al. The Ontology of Biological Attributes (OBA) - Computational Traits for the Life Sciences. Biorxiv : the Preprint Server For Biology. PMID 36747660 DOI: 10.1101/2023.01.26.525742 |
0.347 |
|
| 2022 |
Thaxton C, Goldstein J, DiStefano M, Wallace K, Witmer PD, Haendel MA, Hamosh A, Rehm HL, Berg JS. Lumping versus splitting: How to approach defining a disease to enable accurate genomic curation. Cell Genomics. 2. PMID 35754516 DOI: 10.1016/j.xgen.2022.100131 |
0.306 |
|
| 2020 |
Thessen AE, Grondin CJ, Kulkarni RD, Brander S, Truong L, Vasilevsky NA, Callahan TJ, Chan LE, Westra B, Willis M, Rothenberg SE, Jarabek AM, Burgoon L, Korrick SA, Haendel MA. Community Approaches for Integrating Environmental Exposures into Human Models of Disease. Environmental Health Perspectives. 128: 125002. PMID 33369481 DOI: 10.1289/EHP7215 |
0.351 |
|
| 2020 |
Thessen AE, Walls RL, Vogt L, Singer J, Warren R, Buttigieg PL, Balhoff JP, Mungall CJ, McGuinness DL, Stucky BJ, Yoder MJ, Haendel MA. Transforming the study of organisms: Phenomic data models and knowledge bases. Plos Computational Biology. 16: e1008376. PMID 33232313 DOI: 10.1371/journal.pcbi.1008376 |
0.317 |
|
| 2020 |
Ong E, Wang LL, Schaub J, O'Toole JF, Steck B, Rosenberg AZ, Dowd F, Hansen J, Barisoni L, Jain S, de Boer IH, Valerius MT, Waikar SS, Park C, Crawford DC, ... ... Haendel M, et al. Modelling kidney disease using ontology: insights from the Kidney Precision Medicine Project. Nature Reviews. Nephrology. PMID 32939051 DOI: 10.1038/S41581-020-00335-W |
0.358 |
|
| 2020 |
Duncan WD, Thyvalikakath T, Haendel M, Torniai C, Hernandez P, Song M, Acharya A, Caplan DJ, Schleyer T, Ruttenberg A. Structuring, reuse and analysis of electronic dental data using the Oral Health and Disease Ontology. Journal of Biomedical Semantics. 11: 8. PMID 32819435 DOI: 10.1186/S13326-020-00222-0 |
0.315 |
|
| 2020 |
Vasilevsky NA, Hosseini M, Teplitzky S, Ilik V, Mohammadi E, Schneider J, Kern B, Colomb J, Edmunds SC, Gutzman K, Himmelstein DS, White M, Smith B, O'Keefe L, Haendel M, et al. Is authorship sufficient for today's collaborative research? A call for contributor roles. Accountability in Research. 1-21. PMID 32602379 DOI: 10.1080/08989621.2020.1779591 |
0.324 |
|
| 2020 |
Wagner AH, Walsh B, Mayfield G, Tamborero D, Sonkin D, Krysiak K, Deu-Pons J, Duren RP, Gao J, McMurry J, Patterson S, Del Vecchio Fitz C, Pitel BA, Sezerman OU, Ellrott K, ... ... Haendel M, et al. A harmonized meta-knowledgebase of clinical interpretations of somatic genomic variants in cancer. Nature Genetics. PMID 32246132 DOI: 10.1038/S41588-020-0603-8 |
0.363 |
|
| 2020 |
Haendel M, Vasilevsky N, Unni D, Bologa C, Harris N, Rehm H, Hamosh A, Baynam G, Groza T, McMurry J, Dawkins H, Rath A, Thaxon C, Bocci G, Joachimiak MP, et al. How many rare diseases are there? Nature Reviews. Drug Discovery. 19: 77-78. PMID 32020066 DOI: 10.1038/D41573-019-00180-Y |
0.314 |
|
| 2019 |
Adekile A, Anie KA, Hamda CB, Brown B, Bukini D, Campbell A, Chaouch M, Chimusa E, Chunda-Liyoka C, Dennis-Antwi J, Derebail VK, Flor-Park M, Geard A, Ghedira K, Haendel M, et al. The Sickle Cell Disease Ontology: enabling universal sickle cell-based knowledge representation Database. 2019. PMID 31769834 DOI: 10.1093/Database/Baz118 |
0.33 |
|
| 2019 |
Hotchkiss J, Manyisa N, Adadey SM, Oluwole OG, Wonkam E, Mnika K, Yalcouye A, Nembaware V, Haendel M, Vasilevsky N, Mulder NJ, Jupp S, Wonkam A, Mazandu GK. The Hearing Impairment Ontology: A Tool for Unifying Hearing Impairment Knowledge to Enhance Collaborative Research. Genes. 10. PMID 31766582 DOI: 10.3390/Genes10120960 |
0.409 |
|
| 2019 |
Gourdine JF, Brush MH, Vasilevsky NA, Shefchek K, Köhler S, Matentzoglu N, Munoz-Torres MC, McMurry JA, Zhang XA, Robinson PN, Haendel MA. Representing glycophenotypes: semantic unification of glycobiology resources for disease discovery. Database : the Journal of Biological Databases and Curation. 2019. PMID 31735951 DOI: 10.1093/Database/Baz114 |
0.303 |
|
| 2019 |
Shefchek KA, Harris NL, Gargano M, Matentzoglu N, Unni D, Brush M, Keith D, Conlin T, Vasilevsky N, Zhang XA, Balhoff JP, Babb L, Bello SM, Blau H, Bradford Y, ... ... Haendel MA, et al. The Monarch Initiative in 2019: an integrative data and analytic platform connecting phenotypes to genotypes across species. Nucleic Acids Research. PMID 31701156 DOI: 10.1093/nar/gkz997 |
0.365 |
|
| 2019 |
Köhler S, Øien NC, Buske OJ, Groza T, Jacobsen JOB, McNamara C, Vasilevsky N, Carmody LC, Gourdine JP, Gargano M, McMurry JA, Danis D, Mungall CJ, Smedley D, Haendel M, et al. Encoding Clinical Data with the Human Phenotype Ontology for Computational Differential Diagnostics. Current Protocols in Human Genetics. 103: e92. PMID 31479590 DOI: 10.1002/Cphg.92 |
0.412 |
|
| 2019 |
Nellåker C, Alkuraya FS, Baynam G, Bernier RA, Bernier FPJ, Boulanger V, Brudno M, Brunner HG, Clayton-Smith J, Cogné B, Dawkins HJS, deVries BBA, Douzgou S, Dudding-Byth T, Eichler EE, ... ... Haendel M, et al. Enabling Global Clinical Collaborations on Identifiable Patient Data: The Minerva Initiative. Frontiers in Genetics. 10: 611. PMID 31417602 DOI: 10.3389/Fgene.2019.00611 |
0.387 |
|
| 2019 |
Cacheiro P, Haendel MA, Smedley D. New models for human disease from the International Mouse Phenotyping Consortium. Mammalian Genome : Official Journal of the International Mammalian Genome Society. PMID 31127358 DOI: 10.1007/s00335-019-09804-5 |
0.344 |
|
| 2019 |
Taylor DM, Aronow BJ, Tan K, Bernt K, Salomonis N, Greene CS, Frolova A, Henrickson SE, Wells A, Pei L, Jaiswal JK, Whitsett J, Hamilton KE, MacParland SA, Kelsen J, ... ... Haendel M, et al. The Pediatric Cell Atlas: Defining the Growth Phase of Human Development at Single-Cell Resolution. Developmental Cell. PMID 30930166 DOI: 10.1016/J.Devcel.2019.03.001 |
0.402 |
|
| 2019 |
Vasilevsky N, Zhang A, Yates A, Gourdine J, Callahan T, Haendel M, Hunter L, Robinson P. LOINC2HPO: Curation of Phenotype Data from the Electronic Health Records using the Human Phenotype Ontology F1000research. 8. DOI: 10.7490/F1000Research.1116517.1 |
0.31 |
|
| 2019 |
Heath A, Raman P, Zhu Y, Lilly J, Taylor D, Storm P, Waanders A, Ferretti V, Mattioni M, Davis-Dusenbery B, Flamig Z, Grossman R, Volchenboum S, Mueller S, Nazarian J, ... ... Haendel M, et al. Tmod-19. Gabriella Miller Kids First Data Resource Center: Large-Scale Harmonized Clinical And Genomic Data Platform To Support Childhood Cancer And Structural Birth Defect Research Neuro-Oncology. 21. DOI: 10.1093/Neuonc/Noz036.256 |
0.314 |
|
| 2018 |
Köhler S, Carmody L, Vasilevsky N, Jacobsen JOB, Danis D, Gourdine JP, Gargano M, Harris NL, Matentzoglu N, McMurry JA, Osumi-Sutherland D, Cipriani V, Balhoff JP, Conlin T, Blau H, ... ... Haendel MA, et al. Expansion of the Human Phenotype Ontology (HPO) knowledge base and resources. Nucleic Acids Research. PMID 30476213 DOI: 10.1093/Nar/Gky1105 |
0.352 |
|
| 2018 |
Dolman L, Page A, Babb L, Freimuth RR, Arachchi H, Bizon C, Brush M, Fiume M, Haendel M, Hansen DP, Milosavljevic A, Patel RY, Pawliczek P, Yates AD, Rehm HL. ClinGen advancing genomic data-sharing standards as a GA4GH driver project. Human Mutation. 39: 1686-1689. PMID 30311379 DOI: 10.1002/Humu.23625 |
0.418 |
|
| 2018 |
Arachchi H, Wojcik MH, Weisburd B, Jacobsen JOB, Valkanas E, Baxter S, Byrne AB, O'Donnell-Luria AH, Haendel M, Smedley D, MacArthur DG, Philippakis AA, Rehm HL. matchbox: An open-source tool for patient matching via the Matchmaker Exchange. Human Mutation. PMID 30240502 DOI: 10.1002/Humu.23655 |
0.383 |
|
| 2017 |
Baynam G, Bowman F, Lister K, Walker CE, Pachter N, Goldblatt J, Boycott KM, Gahl WA, Kosaki K, Adachi T, Ishii K, Mahede T, McKenzie F, Townshend S, Slee J, ... ... Haendel M, et al. Improved Diagnosis and Care for Rare Diseases through Implementation of Precision Public Health Framework. Advances in Experimental Medicine and Biology. 1031: 55-94. PMID 29214566 DOI: 10.1007/978-3-319-67144-4_4 |
0.319 |
|
| 2017 |
Sobreira NLM, Arachchi H, Buske OJ, Chong JX, Hutton B, Foreman J, Schiettecatte F, Groza T, Jacobsen JOB, Haendel MA, Boycott KM, Hamosh A, Rehm HL. Matchmaker Exchange. Current Protocols in Human Genetics. 95: 9.31.1-9.31.15. PMID 29044468 DOI: 10.1002/Cphg.50 |
0.376 |
|
| 2017 |
Meehan TF, Conte N, West DB, Jacobsen JO, Mason J, Warren J, Chen CK, Tudose I, Relac M, Matthews P, Karp N, Santos L, Fiegel T, Ring N, Westerberg H, ... ... Haendel M, et al. Disease model discovery from 3,328 gene knockouts by The International Mouse Phenotyping Consortium. Nature Genetics. PMID 28650483 DOI: 10.1038/Ng.3901 |
0.465 |
|
| 2017 |
Manolio TA, Fowler DM, Starita LM, Haendel MA, MacArthur DG, Biesecker LG, Worthey E, Chisholm RL, Green ED, Jacob HJ, McLeod HL, Roden D, Rodriguez LL, Williams MS, Cooper GM, et al. Bedside Back to Bench: Building Bridges between Basic and Clinical Genomic Research. Cell. 169: 6-12. PMID 28340351 DOI: 10.1016/J.Cell.2017.03.005 |
0.557 |
|
| 2017 |
Winfree L, McMurry J, Osumi-Sutherland D, Smedley D, Mungall C, Haendel M, Robinson P, Groza T. The Monarch Initiative: Semantic data integration across species and sources for disease discovery F1000research. 6. DOI: 10.7490/F1000Research.1113820.1 |
0.322 |
|
| 2016 |
Mungall CJ, McMurry JA, Köhler S, Balhoff JP, Borromeo C, Brush M, Carbon S, Conlin T, Dunn N, Engelstad M, Foster E, Gourdine JP, Jacobsen JO, Keith D, Laraway B, ... ... Haendel MA, et al. The Monarch Initiative: an integrative data and analytic platform connecting phenotypes to genotypes across species. Nucleic Acids Research. PMID 27899636 DOI: 10.1093/Nar/Gkw1128 |
0.344 |
|
| 2016 |
Köhler S, Vasilevsky NA, Engelstad M, Foster E, McMurry J, Aymé S, Baynam G, Bello SM, Boerkoel CF, Boycott KM, Brudno M, Buske OJ, Chinnery PF, Cipriani V, Connell LE, ... ... Haendel M, et al. The Human Phenotype Ontology in 2017. Nucleic Acids Research. PMID 27899602 DOI: 10.1093/Nar/Gkw1039 |
0.332 |
|
| 2016 |
Dumontier M, Gray AJ, Marshall MS, Alexiev V, Ansell P, Bader G, Baran J, Bolleman JT, Callahan A, Cruz-Toledo J, Gaudet P, Gombocz EA, Gonzalez-Beltran AN, Groth P, Haendel M, et al. The health care and life sciences community profile for dataset descriptions. Peerj. 4: e2331. PMID 27602295 DOI: 10.7717/Peerj.2331 |
0.358 |
|
| 2016 |
Mulder N, Nembaware V, Adekile A, Anie KA, Inusa B, Brown B, Campbell A, Chinenere F, Chunda-Liyoka C, Derebail VK, Geard A, Ghedira K, Hamilton CM, Hanchard NA, Haendel M, et al. Proceedings of a Sickle Cell Disease Ontology workshop - Towards the first comprehensive ontology for Sickle Cell Disease. Applied & Translational Genomics. 9: 23-9. PMID 27354937 DOI: 10.1016/J.Atg.2016.03.005 |
0.397 |
|
| 2016 |
Mattingly CJ, Boyles R, Lawler CP, Haugen AC, Dearry A, Haendel M. Laying a Community-Based Foundation for Data-Driven Semantic Standards in Environmental Health Sciences. Environmental Health Perspectives. 124: 1136-40. PMID 26871594 DOI: 10.1289/Ehp.1510438 |
0.343 |
|
| 2016 |
Bada M, Vasilevsky N, Haendel M, Hunter L. Updating and extending the concept annotations of the CRAFT corpus F1000research. 5. DOI: 10.7490/F1000Research.1111753.1 |
0.315 |
|
| 2016 |
Vasilevsky N, Engelstad M, Foster E, Mungall C, Robinson P, Kohler S, Haendel M. Enhancing the human phenotype ontology for use by the layperson F1000research. 5. DOI: 10.7490/F1000Research.1111752.1 |
0.305 |
|
| 2016 |
Haendel M, Papatheodorou I, Oellrich A, Mungall CJ, Washington N, Lewis SE, Robinson PN, Smedley D. Tools for exploring mouse models of human disease Drug Discovery Today: Disease Models. 20: 21-26. DOI: 10.1016/J.Ddmod.2017.07.004 |
0.373 |
|
| 2015 |
Philippakis AA, Azzariti DR, Beltran S, Brookes AJ, Brownstein CA, Brudno M, Brunner HG, Buske OJ, Carey K, Doll C, Dumitriu S, Dyke SO, den Dunnen JT, Firth HV, Gibbs RA, ... ... Haendel MA, et al. The Matchmaker Exchange: A Platform for Rare Disease Gene Discovery. Human Mutation. 36: 915-21. PMID 26295439 DOI: 10.1002/Humu.22858 |
0.319 |
|
| 2015 |
Mungall CJ, Washington NL, Nguyen-Xuan J, Condit C, Smedley D, Köhler S, Groza T, Shefchek K, Hochheiser H, Robinson PN, Lewis SE, Haendel MA. Use of Model Organism and Disease Databases to Support Matchmaking for Human Disease Gene Discovery. Human Mutation. 36: 979-84. PMID 26269093 DOI: 10.1002/Humu.22857 |
0.311 |
|
| 2015 |
Buske OJ, Girdea M, Dumitriu S, Gallinger B, Hartley T, Trang H, Misyura A, Friedman T, Beaulieu C, Bone WP, Links AE, Washington NL, Haendel MA, Robinson PN, Boerkoel CF, et al. PhenomeCentral: A Portal for Phenotypic and Genotypic Matchmaking of Patients with Rare Genetic Diseases. Human Mutation. PMID 26251998 DOI: 10.1002/Humu.22851 |
0.313 |
|
| 2015 |
Haendel MA, Vasilevsky N, Brush M, Hochheiser HS, Jacobsen J, Oellrich A, Mungall CJ, Washington N, Köhler S, Lewis SE, Robinson PN, Smedley D. Disease insights through cross-species phenotype comparisons. Mammalian Genome : Official Journal of the International Mammalian Genome Society. PMID 26092691 DOI: 10.1007/S00335-015-9577-8 |
0.359 |
|
| 2015 |
Ochs C, Perl Y, Geller J, Haendel M, Brush M, Arabandi S, Tu S. Summarizing and visualizing structural changes during the evolution of biomedical ontologies using a Diff Abstraction Network. Journal of Biomedical Informatics. PMID 26048076 DOI: 10.1016/J.Jbi.2015.05.018 |
0.321 |
|
| 2015 |
Deans AR, Lewis SE, Huala E, Anzaldo SS, Ashburner M, Balhoff JP, Blackburn DC, Blake JA, Burleigh JG, Chanet B, Cooper LD, Courtot M, Csösz S, Cui H, Dahdul W, ... ... Haendel M, et al. Finding our way through phenotypes. Plos Biology. 13: e1002033. PMID 25562316 DOI: 10.1371/Journal.Pbio.1002033 |
0.417 |
|
| 2015 |
Deck J, Guralnick R, Walls R, Blum S, Haendel M, Matsunaga A, Wieczorek J. Meeting report: Identifying practical applications of ontologies for biodiversity informatics Standards in Genomic Sciences. 10. DOI: 10.1186/S40793-015-0014-0 |
0.362 |
|
| 2014 |
Ibn-Salem J, Köhler S, Love MI, Chung HR, Huang N, Hurles ME, Haendel M, Washington NL, Smedley D, Mungall CJ, Lewis SE, Ott CE, Bauer S, Schofield PN, Mundlos S, et al. Deletions of chromosomal regulatory boundaries are associated with congenital disease. Genome Biology. 15: 423. PMID 25315429 DOI: 10.1186/S13059-014-0423-1 |
0.336 |
|
| 2014 |
Köhler S, Schoeneberg U, Czeschik JC, Doelken SC, Hehir-Kwa JY, Ibn-Salem J, Mungall CJ, Smedley D, Haendel MA, Robinson PN. Clinical interpretation of CNVs with cross-species phenotype data. Journal of Medical Genetics. 51: 766-72. PMID 25280750 DOI: 10.1136/jmedgenet-2014-102633 |
0.368 |
|
| 2014 |
Zemojtel T, Köhler S, Mackenroth L, Jäger M, Hecht J, Krawitz P, Graul-Neumann L, Doelken S, Ehmke N, Spielmann M, Oien NC, Schweiger MR, Krüger U, Frommer G, Fischer B, ... ... Haendel M, et al. Effective diagnosis of genetic disease by computational phenotype analysis of the disease-associated genome. Science Translational Medicine. 6: 252ra123. PMID 25186178 DOI: 10.1126/Scitranslmed.3009262 |
0.438 |
|
| 2014 |
Oellrich A, Koehler S, Washington N, Mungall C, Lewis S, Haendel M, Robinson PN, Smedley D. The influence of disease categories on gene candidate predictions from model organism phenotypes. Journal of Biomedical Semantics. 5: S4. PMID 25093073 DOI: 10.1186/2041-1480-5-S1-S4 |
0.436 |
|
| 2014 |
Haendel MA, Balhoff JP, Bastian FB, Blackburn DC, Blake JA, Bradford Y, Comte A, Dahdul WM, Dececchi TA, Druzinsky RE, Hayamizu TF, Ibrahim N, Lewis SE, Mabee PM, Niknejad A, et al. Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon. Journal of Biomedical Semantics. 5: 21. PMID 25009735 DOI: 10.1186/2041-1480-5-21 |
0.338 |
|
| 2014 |
Hoehndorf R, Haendel M, Stevens R, Rebholz-Schuhmann D. Thematic series on biomedical ontologies in JBMS: challenges and new directions. Journal of Biomedical Semantics. 5: 15. PMID 24602198 DOI: 10.1186/2041-1480-5-15 |
0.323 |
|
| 2014 |
Van Slyke CE, Bradford YM, Westerfield M, Haendel MA. The zebrafish anatomy and stage ontologies: representing the anatomy and development of Danio rerio. Journal of Biomedical Semantics. 5: 12. PMID 24568621 DOI: 10.1186/2041-1480-5-12 |
0.567 |
|
| 2014 |
Köhler S, Doelken SC, Mungall CJ, Bauer S, Firth HV, Bailleul-Forestier I, Black GC, Brown DL, Brudno M, Campbell J, FitzPatrick DR, Eppig JT, Jackson AP, Freson K, Girdea M, ... ... Haendel M, et al. The Human Phenotype Ontology project: linking molecular biology and disease through phenotype data. Nucleic Acids Research. 42: D966-74. PMID 24217912 DOI: 10.1093/Nar/Gkt1026 |
0.608 |
|
| 2014 |
Robinson PN, Köhler S, Oellrich A, Wang K, Mungall CJ, Lewis SE, Washington N, Bauer S, Seelow D, Krawitz P, Gilissen C, Haendel M, Smedley D. Improved exome prioritization of disease genes through cross-species phenotype comparison. Genome Research. 24: 340-8. PMID 24162188 DOI: 10.1101/Gr.160325.113 |
0.427 |
|
| 2014 |
Smedley D, Kohler S, Bone W, Oellrich A, Jacobsen J, Wang K, Mungall C, Washington N, Bauer S, Seelow D, Krawitz P, Boerkel C, Gilissen C, Haendel M, Lewis SE, et al. Use of animal models for exome prioritization of rare disease genes Orphanet Journal of Rare Diseases. 1-2. DOI: 10.1186/1750-1172-9-S1-O19 |
0.487 |
|
| 2013 |
Arighi CN, Carterette B, Cohen KB, Krallinger M, Wilbur WJ, Fey P, Dodson R, Cooper L, Van Slyke CE, Dahdul W, Mabee P, Li D, Harris B, Gillespie M, Jimenez S, ... ... Haendel M, et al. An overview of the BioCreative 2012 Workshop Track III: interactive text mining task. Database : the Journal of Biological Databases and Curation. 2013: bas056. PMID 23327936 DOI: 10.1093/Database/Bas056 |
0.309 |
|
| 2012 |
Dahdul WM, Balhoff JP, Blackburn DC, Diehl AD, Haendel MA, Hall BK, Lapp H, Lundberg JG, Mungall CJ, Ringwald M, Segerdell E, Van Slyke CE, Vickaryous MK, Westerfield M, Mabee PM. A unified anatomy ontology of the vertebrate skeletal system. Plos One. 7: e51070. PMID 23251424 DOI: 10.1371/Journal.Pone.0051070 |
0.558 |
|
| 2011 |
Mungall CJ, Anderson D, Bandrowski A, Canada B, Chatyr-Aryamontri A, Cheng K, Conn PM, Dolinski K, Ellisman M, Eppig J, Grethe JS, Kemnitz J, Iadonato S, Larson SD, Magness C, ... ... Haendel MA, et al. An ontology-based approach to linking model organisms and resources to human diseases Ceur Workshop Proceedings. 833: 263-265. |
0.506 |
|
| 2010 |
Dahdul WM, Lundberg JG, Midford PE, Balhoff JP, Lapp H, Vision TJ, Haendel MA, Westerfield M, Mabee PM. The teleost anatomy ontology: anatomical representation for the genomics age. Systematic Biology. 59: 369-83. PMID 20547776 DOI: 10.1093/Sysbio/Syq013 |
0.583 |
|
| 2009 |
Washington NL, Haendel MA, Mungall CJ, Ashburner M, Westerfield M, Lewis SE. Linking human diseases to animal models using ontology-based phenotype annotation. Plos Biology. 7: e1000247. PMID 19956802 DOI: 10.1371/Journal.Pbio.1000247 |
0.603 |
|
| 2008 |
Sprague J, Bayraktaroglu L, Bradford Y, Conlin T, Dunn N, Fashena D, Frazer K, Haendel M, Howe DG, Knight J, Mani P, Moxon SA, Pich C, Ramachandran S, Schaper K, et al. The Zebrafish Information Network: the zebrafish model organism database provides expanded support for genotypes and phenotypes. Nucleic Acids Research. 36: D768-72. PMID 17991680 DOI: 10.1093/Nar/Gkm956 |
0.619 |
|
| 2008 |
Takayama S, Hostick U, Haendel M, Eisen J, Darimont B. An F-domain introduced by alternative splicing regulates activity of the zebrafish thyroid hormone receptor alpha. General and Comparative Endocrinology. 155: 176-89. PMID 17583703 DOI: 10.1016/J.Ygcen.2007.04.012 |
0.485 |
|
| 2007 |
Mabee PM, Arratia G, Coburn M, Haendel M, Hilton EJ, Lundberg JG, Mayden RL, Rios N, Westerfield M. Connecting evolutionary morphology to genomics using ontologies: a case study from Cypriniformes including zebrafish. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. 308: 655-68. PMID 17599725 DOI: 10.1002/Jez.B.21181 |
0.64 |
|
| 2007 |
Day-Richter J, Harris MA, Haendel M, Clark JI, Ireland A, Lomax J, Eilbeck K, Lewis S, Mungall C, Diehl AD, Drabkin H, Christie KR, Berardini T, Fey P, Bastiani CA, et al. OBO-Edit - An ontology editor for biologists Bioinformatics. 23: 2198-2200. PMID 17545183 DOI: 10.1093/Bioinformatics/Btm112 |
0.372 |
|
| 2007 |
Mabee PM, Ashburner M, Cronk Q, Gkoutos GV, Haendel M, Segerdell E, Mungall C, Westerfield M. Phenotype ontologies: the bridge between genomics and evolution. Trends in Ecology & Evolution. 22: 345-50. PMID 17416439 DOI: 10.1016/J.Tree.2007.03.013 |
0.609 |
|
| 2006 |
Sprague J, Bayraktaroglu L, Clements D, Conlin T, Fashena D, Frazer K, Haendel M, Howe DG, Mani P, Ramachandran S, Schaper K, Segerdell E, Song P, Sprunger B, Taylor S, et al. The Zebrafish Information Network: the zebrafish model organism database. Nucleic Acids Research. 34: D581-5. PMID 16381936 DOI: 10.1093/Nar/Gkj086 |
0.586 |
|
| 2005 |
Metcalfe SM, Muthukumarana PA, Thompson HL, Haendel MA, Lyons GE. Leukaemia inhibitory factor (LIF) is functionally linked to axotrophin and both LIF and axotrophin are linked to regulatory immune tolerance. Febs Letters. 579: 609-14. PMID 15670816 DOI: 10.1016/j.febslet.2004.12.027 |
0.496 |
|
| 2004 |
Haendel MA, Tilton F, Bailey GS, Tanguay RL. Developmental toxicity of the dithiocarbamate pesticide sodium metam in zebrafish. Toxicological Sciences : An Official Journal of the Society of Toxicology. 81: 390-400. PMID 15201444 DOI: 10.1093/toxsci/kfh202 |
0.488 |
|
| 2004 |
Reyes R, Haendel M, Grant D, Melancon E, Eisen JS. Slow degeneration of zebrafish Rohon-Beard neurons during programmed cell death. Developmental Dynamics : An Official Publication of the American Association of Anatomists. 229: 30-41. PMID 14699575 DOI: 10.1002/Dvdy.10488 |
0.469 |
|
| 2000 |
Lyons GE, Swanson BJ, Haendel MA, Daniels J. Gene trapping in embryonic stem cells in vitro to identify novel developmentally regulated genes in the mouse. Methods in Molecular Biology (Clifton, N.J.). 136: 297-307. PMID 10840719 DOI: 10.1385/1-59259-065-9:297 |
0.537 |
|
| 1999 |
Hunter PJ, Swanson BJ, Haendel MA, Lyons GE, Cross JC. Mrj encodes a DnaJ-related co-chaperone that is essential for murine placental development. Development (Cambridge, England). 126: 1247-58. PMID 10021343 |
0.558 |
|
| 1997 |
Baker RK, Haendel MA, Swanson BJ, Shambaugh JC, Micales BK, Lyons GE. In vitro preselection of gene-trapped embryonic stem cell clones for characterizing novel developmentally regulated genes in the mouse. Developmental Biology. 185: 201-14. PMID 9187083 DOI: 10.1006/dbio.1997.8541 |
0.542 |
|
| Show low-probability matches. |