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Anton Zilman - Publications

Affiliations: 
2004-2006 Rockefeller University, New York, NY, United States 
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36/72 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Bel G, Zilman A, Kolomeisky AB. Different time scales in dynamic systems with multiple outcomes. The Journal of Chemical Physics. 153: 054107. PMID 32770919 DOI: 10.1063/5.0018558  0.316
2020 Paci G, Zheng T, Caria J, Zilman A, Lemke EA. Molecular determinants of large cargo transport into the nucleus. Elife. 9. PMID 32692309 DOI: 10.7554/Elife.55963  0.378
2020 Paci G, Zheng T, Caria J, Zilman A, Lemke EA. Author response: Molecular determinants of large cargo transport into the nucleus Elife. DOI: 10.7554/Elife.55963.Sa2  0.33
2020 Caria J, Paci G, Zheng T, Zilman A, Lemke EA. Molecular Determinants of Large Cargo Transport into the Nucleus Biophysical Journal. 118: 342a. DOI: 10.1016/J.Bpj.2019.11.1904  0.348
2019 Gu C, Vovk A, Zheng T, Coalson RD, Zilman A. The Role of Cohesiveness in the Permeability of the Spatial Assemblies of FG Nucleoporins. Biophysical Journal. PMID 30902367 DOI: 10.1016/J.Bpj.2019.02.028  0.412
2018 Zilman A. Aggregation, Phase Separation and Spatial Morphologies of the Assemblies of FG Nucleoporins. Journal of Molecular Biology. PMID 30017917 DOI: 10.1016/J.Jmb.2018.07.011  0.38
2018 Ozmaian M, Jasnow D, Eskandari Nasrabad A, Zilman A, Coalson RD. Effects of cross-linking on partitioning of nanoparticles into a polymer brush: Coarse-grained simulations test simple approximate theories. The Journal of Chemical Physics. 148: 024902. PMID 29331141 DOI: 10.1063/1.4990796  0.324
2017 Fu G, Tu LC, Zilman A, Musser SM. Investigating molecular crowding within nuclear pores using polarization-PALM. Elife. 6. PMID 28949296 DOI: 10.7554/Elife.28716  0.343
2017 Jovanovic-Talisman T, Zilman A. Protein Transport by the Nuclear Pore Complex: Simple Biophysics of a Complex Biomachine. Biophysical Journal. 113: 6-14. PMID 28700925 DOI: 10.1016/J.Bpj.2017.05.024  0.372
2017 Gu C, Coalson RD, Jasnow D, Zilman A. Free Energy of Nanoparticle Binding to Multivalent Polymeric Substrates. The Journal of Physical Chemistry. B. PMID 28631928 DOI: 10.1021/Acs.Jpcb.7B00868  0.317
2016 Vovk A, Gu C, Opferman MG, Kapinos LE, Lim RY, Coalson RD, Jasnow D, Zilman A. Simple biophysics underpins collective conformations of the intrinsically disordered proteins of the Nuclear Pore Complex. Elife. 5. PMID 27198189 DOI: 10.7554/Elife.10785  0.394
2016 Eskandari Nasrabad A, Jasnow D, Zilman A, Coalson RD. Precise control of polymer coated nanopores by nanoparticle additives: Insights from computational modeling The Journal of Chemical Physics. 145: 064901. DOI: 10.1063/1.4955191  0.302
2015 Coalson RD, Eskandari Nasrabad A, Jasnow D, Zilman A. A Polymer-Brush-Based Nanovalve Controlled by Nanoparticle Additives: Design Principles. The Journal of Physical Chemistry. B. 119: 11858-66. PMID 26222480 DOI: 10.1021/Acs.Jpcb.5B02623  0.33
2014 Zilman A, Opferman M, Jasnow D, Coalson R. Simple Physical Considerations Explain the Conformational Transitions of the Fg- Nucleoporins Induced by the Transport Factors Biophysical Journal. 106: 313a. DOI: 10.1016/J.Bpj.2013.11.1811  0.415
2013 Tu LC, Fu G, Zilman A, Musser SM. Large cargo transport by nuclear pores: implications for the spatial organization of FG-nucleoporins. The Embo Journal. 32: 3220-30. PMID 24213245 DOI: 10.1038/Emboj.2013.239  0.395
2013 Tian J, Zilman A, Gnanakaran S. A Study of Intrinsically Disordered Proteins from Nuclear Pore Complex Biophysical Journal. 104. DOI: 10.1016/J.Bpj.2012.11.346  0.354
2012 Opferman MG, Coalson RD, Jasnow D, Zilman A. Morphological control of grafted polymer films via attraction to small nanoparticle inclusions. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 86: 031806. PMID 23030937 DOI: 10.1103/Physreve.86.031806  0.322
2012 Zilman A, Opferman M, Coalson R, Jasnow D, Welch P. Physical Modeling of the Conformational Dynamics of the Flexible Unfolded Proteins of the Nuclear Pore Complex Biophysical Journal. 102: 526a. DOI: 10.1016/J.Bpj.2011.11.2874  0.416
2012 Tu L, Zilman A, Musser SM. Binding to FG-Nups Is Insufficient to Promote Nuclear Transport Biophysical Journal. 102: 525a. DOI: 10.1016/J.Bpj.2011.11.2869  0.392
2011 Jovanovic-Talisman T, Zilman A. Nanobiotechnology: building a basic nanomachine. Nature Nanotechnology. 6: 397-8. PMID 21731070 DOI: 10.1038/Nnano.2011.108  0.333
2010 Zilman A, Bel G. Crowding effects in non-equilibrium transport through nano-channels. Journal of Physics. Condensed Matter : An Institute of Physics Journal. 22: 454130. PMID 21339616 DOI: 10.1088/0953-8984/22/45/454130  0.379
2010 Zilman A, Di Talia S, Jovanovic-Talisman T, Chait BT, Rout MP, Magnasco MO. Enhancement of transport selectivity through nano-channels by non-specific competition. Plos Computational Biology. 6: e1000804. PMID 20548778 DOI: 10.1371/Journal.Pcbi.1000804  0.605
2009 Zilman A, Pearson J, Bel G. Effects of jamming on nonequilibrium transport times in nanochannels. Physical Review Letters. 103: 128103. PMID 19792464 DOI: 10.1103/Physrevlett.103.128103  0.374
2009 Zilman A. Effects of multiple occupancy and interparticle interactions on selective transport through narrow channels: theory versus experiment. Biophysical Journal. 96: 1235-48. PMID 19217844 DOI: 10.1016/J.Bpj.2008.09.058  0.374
2009 Jovanovic-Talisman T, Tetenbaum-Novatt J, McKenney AS, Zilman A, Peters R, Rout MP, Chait BT. Artificial nanopores that mimic the transport selectivity of the nuclear pore complex. Nature. 457: 1023-7. PMID 19098896 DOI: 10.1038/Nature07600  0.375
2009 Zilman A. Mechanisms Of Selective Transport Through Nano-channels: Theory Vs. Experiment Biophysical Journal. 96: 646a-647a. DOI: 10.1016/J.Bpj.2008.12.3846  0.368
2007 Zilman A, Di Talia S, Chait BT, Rout MP, Magnasco MO. Efficiency, selectivity, and robustness of nucleocytoplasmic transport. Plos Computational Biology. 3: e125. PMID 17630825 DOI: 10.1371/Journal.Pcbi.0030125  0.605
2006 Salman H, Zilman A, Loverdo C, Jeffroy M, Libchaber A. Solitary modes of bacterial culture in a temperature gradient. Physical Review Letters. 97: 118101. PMID 17025931 DOI: 10.1103/Physrevlett.97.118101  0.494
2004 Zilman A, Safran SA, Sottmann T, Strey R. Temperature dependence of the thermodynamics and kinetics of micellar solutions. Langmuir : the Acs Journal of Surfaces and Colloids. 20: 2199-207. PMID 15835671 DOI: 10.1021/la0359732  0.479
2004 Gov N, Zilman AG, Safran S. Hydrodynamics of confined membranes. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 70: 011104. PMID 15324039 DOI: 10.1103/Physreve.70.011104  0.589
2003 Zilman A, Kieffer J, Molino F, Porte G, Safran SA. Entropic phase separation in polymer-microemulsion networks. Physical Review Letters. 91: 015901. PMID 12906554 DOI: 10.1103/Physrevlett.91.015901  0.54
2003 Gov N, Zilman AG, Safran S. Cytoskeleton confinement and tension of red blood cell membranes. Physical Review Letters. 90: 228101. PMID 12857343 DOI: 10.1103/PhysRevLett.90.228101  0.487
2003 Zilman AG, Safran SA. Role of cross-links in bundle formation, phase separation and gelation of long filaments Europhysics Letters. 63: 139-145. DOI: 10.1209/epl/i2003-00489-5  0.507
2003 Zilman A, Tlusty T, Safran SA. Entropic networks in colloidal, polymeric and amphiphilic systems Journal of Physics Condensed Matter. 15: S57-S64. DOI: 10.1088/0953-8984/15/1/306  0.66
2002 Zilman AG, Safran SA. Thermodynamics and structure of self-assembled networks. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 66: 051107. PMID 12513467 DOI: 10.1103/PhysRevE.66.051107  0.521
2001 Zilman AG, Safran SA. Entropically driven attraction between telechelic brushes European Physical Journal E. 4: 467-473. DOI: 10.1007/s101890170102  0.478
Low-probability matches (unlikely to be authored by this person)
2010 Zilman A, Ganusov VV, Perelson AS. Stochastic models of lymphocyte proliferation and death. Plos One. 5. PMID 20941358 DOI: 10.1371/Journal.Pone.0012775  0.298
2023 Zheng T, Zilman A. Self-regulation of the nuclear pore complex enables clogging-free crowded transport. Proceedings of the National Academy of Sciences of the United States of America. 120: e2212874120. PMID 36757893 DOI: 10.1073/pnas.2212874120  0.298
2018 Kampf N, Wachtel EJ, Zilman A, Ben-Shalom N, Klein J. Anomalous viscosity-time behavior of polysaccharide dispersions. The Journal of Chemical Physics. 149: 163320. PMID 30384755 DOI: 10.1063/1.5027720  0.296
2013 Opferman MG, Coalson RD, Jasnow D, Zilman A. Morphology of polymer brushes infiltrated by attractive nanoinclusions of various sizes. Langmuir : the Acs Journal of Surfaces and Colloids. 29: 8584-91. PMID 23758614 DOI: 10.1021/La4013922  0.287
2016 Mohammadi H, Zilman A, McCulloch C. Complex Mechanics of Collagen Matrices and their Impact on Remote Intercellular Communication Biophysical Journal. 110: 306a. DOI: 10.1016/J.Bpj.2015.11.1646  0.284
2020 Sindhwani S, Syed AM, Ngai J, Kingston BR, Maiorino L, Rothschild J, MacMillan P, Zhang Y, Rajesh NU, Hoang T, Wu JLY, Wilhelm S, Zilman A, Gadde S, Sulaiman A, et al. The entry of nanoparticles into solid tumours. Nature Materials. PMID 31932672 DOI: 10.1038/S41563-019-0566-2  0.283
2017 Nino D, Rafiei N, Wang Y, Zilman A, Milstein JN. Molecular Counting with Localization Microscopy: A Bayesian Estimate Based on Fluorophore Statistics. Biophysical Journal. 112: 1777-1785. PMID 28494949 DOI: 10.1016/J.Bpj.2017.03.020  0.28
2021 Davis LK, S Arić A, Hoogenboom BW, Zilman A. Physical modelling of multivalent interactions in the nuclear pore complex. Biophysical Journal. PMID 33617830 DOI: 10.1016/j.bpj.2021.01.039  0.275
2021 Hoogenboom BW, Hough LE, Lemke EA, Lim RYH, Onck PR, Zilman A. Physics of the Nuclear Pore Complex: Theory, Modeling and Experiment. Physics Reports. 921: 1-53. PMID 35892075 DOI: 10.1016/j.physrep.2021.03.003  0.264
2019 François P, Zilman A. Physical approaches to receptor sensing and ligand discrimination Current Opinion in Systems Biology. 18: 111-121. DOI: 10.1016/J.Coisb.2019.10.017  0.249
2016 Tsoi KM, MacParland SA, Ma XZ, Spetzler VN, Echeverri J, Ouyang B, Fadel SM, Sykes EA, Goldaracena N, Kaths JM, Conneely JB, Alman BA, Selzner M, Ostrowski MA, Adeyi OA, ... Zilman A, et al. Mechanism of hard-nanomaterial clearance by the liver. Nature Materials. PMID 27525571 DOI: 10.1038/Nmat4718  0.246
2016 Vovk A, Gu C, Opferman MG, Kapinos LE, Lim RY, Coalson RD, Jasnow D, Zilman A. Author response: Simple biophysics underpins collective conformations of the intrinsically disordered proteins of the Nuclear Pore Complex Elife. DOI: 10.7554/Elife.10785.025  0.245
2020 Badali M, Zilman A. Effects of niche overlap on coexistence, fixation and invasion in a population of two interacting species. Royal Society Open Science. 7: 192181. PMID 32257357 DOI: 10.1098/Rsos.192181  0.239
2017 Fu G, Tu L, Zilman A, Musser SM. Author response: Investigating molecular crowding within nuclear pores using polarization-PALM Elife. DOI: 10.7554/Elife.28716.047  0.236
2016 MacParland SA, Tsoi KM, Ouyang B, Ma XZ, Manuel J, Fawaz A, Ostrowski MA, Alman BA, Zilman A, Chan WC, McGilvray ID. Gold Nanoparticle Uptake by Human Derived Macrophages and Primary Liver Phagocytic Cells is Dependent on Phenotype. Acs Nano. PMID 28040885 DOI: 10.1021/Acsnano.6B06245  0.232
2011 Nemenman I, Faeder JR, Hlavacek WS, Jiang Y, Wall ME, Zilman A. Selected papers from the Fourth Annual q-bio Conference on Cellular Information Processing. Physical Biology. 8: 050301. PMID 21832800 DOI: 10.1088/1478-3975/8/5/050301  0.228
2022 Kalita J, Kapinos LE, Zheng T, Rencurel C, Zilman A, Lim RYH. Karyopherin enrichment and compensation fortifies the nuclear pore complex against nucleocytoplasmic leakage. The Journal of Cell Biology. 221. PMID 35089308 DOI: 10.1083/jcb.202108107  0.225
2019 Nino DF, Djarkarsana D, Zilman A, Milstein J. Molecular Counting with DNA Origami - Verification and Validation Towards Biological Applications Biophysical Journal. 116: 174a-175a. DOI: 10.1016/J.Bpj.2018.11.969  0.223
2010 Nemenman I, Hlavacek WS, Jiang Y, Wall ME, Zilman A. The Third q-bio Conference on Cellular Information Processing. Iet Systems Biology. 4: 331-3. PMID 21073232 DOI: 10.1049/Iet-Syb.2010.9133  0.186
2024 Granek R, Hoffmann I, Kelley EG, Nagao M, Vlahovska PM, Zilman A. Dynamic structure factor of undulating vesicles: finite-size and spherical geometry effects with application to neutron spin echo experiments. The European Physical Journal. E, Soft Matter. 47: 12. PMID 38355850 DOI: 10.1140/epje/s10189-023-00400-9  0.181
2023 Vovk A, Zilman A. Effects of Sequence Composition, Patterning and Hydrodynamics on the Conformation and Dynamics of Intrinsically Disordered Proteins. International Journal of Molecular Sciences. 24. PMID 36674958 DOI: 10.3390/ijms24021444  0.178
2023 Rothschild J, Ma T, Milstein JN, Zilman A. Spatial exclusion leads to "tug-of-war" ecological dynamics between competing species within microchannels. Plos Computational Biology. 19: e1010868. PMID 38039342 DOI: 10.1371/journal.pcbi.1010868  0.156
2022 Leibovich N, Rothschild J, Goyal S, Zilman A. Phenomenology and dynamics of competitive ecosystems beyond the niche-neutral regimes. Proceedings of the National Academy of Sciences of the United States of America. 119: e2204394119. PMID 36251996 DOI: 10.1073/pnas.2204394119  0.151
1996 Zilman AG, Granek R. Undulations and Dynamic Structure Factor of Membranes. Physical Review Letters. 77: 4788-4791. PMID 10062631 DOI: 10.1103/Physrevlett.77.4788  0.141
2002 Zilman AG, Granek R. Membrane dynamics and structure factor Chemical Physics. 284: 195-204. DOI: 10.1016/S0301-0104(02)00548-7  0.136
1999 Granek R, Pierrat S, Zilman AG. Anomalous diffusion in membranes Materials Research Society Symposium - Proceedings. 543: 103-114.  0.131
1999 Zilman AG, Granek R. Undulation instability of lamellar phases under shear: A mechanism for onion formation? European Physical Journal B. 11: 593-608.  0.131
2024 Zheng T, Zilman A. Kinetic cooperativity resolves bidirectional clogging within the nuclear pore complex. Biophysical Journal. PMID 38640928 DOI: 10.1016/j.bpj.2024.03.027  0.12
1994 Aharonson V, Andelman D, Zilman A, Pincus PA, Raphaël E. Polymer adsorption at liquid/air interfaces under lateral pressure Physica a: Statistical Mechanics and Its Applications. 204: 1-16. DOI: 10.1016/0378-4371(94)90414-6  0.112
2001 Zilman AG, Granek R. Dynamics of sol-gel clusters and branched polymers Materials Research Society Symposium - Proceedings. 651: T1.6.1-T1.6.7.  0.093
1998 Zilman AG, Granek R. Dynamics of fractal sol-gel polymeric clusters Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics. 58: R2725-R2728.  0.09
2021 Smart M, Goyal S, Zilman A. Roles of phenotypic heterogeneity and microenvironment feedback in early tumor development. Physical Review. E. 103: 032407. PMID 33862830 DOI: 10.1103/PhysRevE.103.032407  0.082
2016 Fathi S, Nayak CR, Feld JJ, Zilman AG. Absolute Ligand Discrimination by Dimeric Signaling Receptors. Biophysical Journal. 111: 917-920. PMID 27602720 DOI: 10.1016/j.bpj.2016.07.029  0.077
2021 Kirby D, Parmar B, Fathi S, Marwah S, Nayak CR, Cherepanov V, MacParland S, Feld JJ, Altan-Bonnet G, Zilman A. Determinants of Ligand Specificity and Functional Plasticity in Type I Interferon Signaling. Frontiers in Immunology. 12: 748423. PMID 34691060 DOI: 10.3389/fimmu.2021.748423  0.069
2023 Kirby D, Zilman A. Proofreading does not result in more reliable ligand discrimination in receptor signaling due to its inherent stochasticity. Proceedings of the National Academy of Sciences of the United States of America. 120: e2212795120. PMID 37192165 DOI: 10.1073/pnas.2212795120  0.058
2021 Kirby D, Rothschild J, Smart M, Zilman A. Pleiotropy enables specific and accurate signaling in the presence of ligand cross talk. Physical Review. E. 103: 042401. PMID 34005921 DOI: 10.1103/PhysRevE.103.042401  0.047
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