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Giovanni Zocchi - Publications

Affiliations: 
Physics & Astronomy University of California, Los Angeles, Los Angeles, CA 
Website:
http://www.pa.ucla.edu/directory/giovanni-zocchi
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61 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Tseng CY, Wang Y, Zocchi G. Enzyme-DNA chimeras: Construction, allostery, applications. Methods in Enzymology. 647: 257-281. PMID 33482992 DOI: 10.1016/bs.mie.2020.09.010  0.646
2018 Alavi Z, Zocchi G. Dissipation at the angstrom scale: Probing the surface and interior of an enzyme. Physical Review. E. 97: 052402. PMID 29906977 DOI: 10.1103/Physreve.97.052402  0.381
2018 Casanova-Morales N, Quiroga-Roger D, Alfaro-Valdés HM, Alavi Z, Lagos-Espinoza MIA, Zocchi G, Wilson CAM. Mechanical properties of BiP protein determined by nano-rheology. Protein Science : a Publication of the Protein Society. PMID 29696702 DOI: 10.1002/Pro.3432  0.317
2017 Zhan Y, Zocchi G. Flexibility of DNA/PNA, DNA/LNA, DNA/RNA hybrids measured with a nanoscale transducer Epl (Europhysics Letters). 119: 48005. DOI: 10.1209/0295-5075/119/48005  0.496
2015 Sanchez DS, Zocchi G. EcoRV catalysis with a pre-bent substrate Aip Advances. 5: 057153. DOI: 10.1063/1.4921837  0.452
2015 Alavi Z, Ariyaratne A, Zocchi G. Nano-rheology measurements reveal that the hydration layer of enzymes partially controls conformational dynamics Applied Physics Letters. 106: 203702. DOI: 10.1063/1.4921414  0.353
2015 Ariyaratne A, Zocchi G. Plasmon resonance enhanced mechanical detection of ligand binding Applied Physics Letters. 106: 013702. DOI: 10.1063/1.4905550  0.303
2014 Ariyaratne A, Wu C, Tseng CY, Zocchi G. Dissipative dynamics of enzymes. Physical Review Letters. 113: 198101. PMID 25415926 DOI: 10.1103/Physrevlett.113.198101  0.627
2014 Joseph C, Tseng CY, Zocchi G, Tlusty T. Asymmetric effect of mechanical stress on the forward and reverse reaction catalyzed by an enzyme. Plos One. 9: e101442. PMID 25000118 DOI: 10.1371/Journal.Pone.0101442  0.738
2014 Tseng CY, Zocchi G. Equilibrium softening of an enzyme explored with the DNA spring Applied Physics Letters. 104. DOI: 10.1063/1.4871872  0.678
2013 Wang J, Qu H, Zocchi G. Critical bending torque of DNA is a materials parameter independent of local base sequence. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 88: 032712. PMID 24125299 DOI: 10.1103/Physreve.88.032712  0.653
2013 Tseng CY, Zocchi G. Mechanical control of Renilla luciferase. Journal of the American Chemical Society. 135: 11879-86. PMID 23863076 DOI: 10.1021/Ja4043565  0.686
2013 Sanchez DS, Qu H, Bulla D, Zocchi G. DNA kinks and bubbles: temperature dependence of the elastic energy of sharply bent 10-nm-size DNA molecules. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 87: 022710. PMID 23496551 DOI: 10.1103/Physreve.87.022710  0.661
2013 Qu H, Zocchi G. How enzymeswork: A look through the perspective of molecular viscoelastic properties Physical Review X. 3. DOI: 10.1103/Physrevx.3.011009  0.574
2012 Qu H, Landy J, Zocchi G. Cracking phase diagram for the dynamics of an enzyme. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 86: 041915. PMID 23214623 DOI: 10.1103/Physreve.86.041915  0.541
2012 Qu H, Wang Y, Tseng C, Zocchi G. Nonlinear Elasticity of DNA Bending Biophysical Journal. 102: 275a-276a. DOI: 10.1016/J.Bpj.2011.11.1519  0.742
2011 Wang Y, Zocchi G. Viscoelastic transition and yield strain of the folded protein. Plos One. 6: e28097. PMID 22174767 DOI: 10.1371/Journal.Pone.0028097  0.346
2011 Wang A, Zocchi G. Artificial modulation of the gating behavior of a K+ channel in a KvAP-DNA chimera. Plos One. 6: e18598. PMID 21526187 DOI: 10.1371/Journal.Pone.0018598  0.491
2011 Wang Y, Zocchi G. The folded protein as a viscoelastic solid Epl (Europhysics Letters). 96: 18003. DOI: 10.1209/0295-5075/96/18003  0.33
2011 Qu H, Zocchi G. The complete bending energy function for nicked DNA Epl. 94. DOI: 10.1209/0295-5075/94/18003  0.635
2011 Qu H, Wang Y, Tseng C, Zocchi G. Critical Torque for Kink Formation in Double-Stranded DNA Physical Review X. 1. DOI: 10.1103/Physrevx.1.021008  0.759
2011 Wang A, Zocchi G. Artificial Electrostatic Modulation of the Gating Behavior of a Voltage-Dependent Potassium Channel Biophysical Journal. 100: 100a. DOI: 10.1016/J.Bpj.2010.12.752  0.305
2010 Wang Y, Zocchi G. Elasticity of globular proteins measured from the ac susceptibility. Physical Review Letters. 105: 238104. PMID 21231509 DOI: 10.1103/Physrevlett.105.238104  0.315
2010 Tseng CY, Wang A, Zocchi G. Mechano-chemistry of the enzyme Guanylate Kinase Epl. 91. DOI: 10.1209/0295-5075/91/18005  0.638
2010 Qu H, Tseng C, Wang Y, Levine AJ, Zocchi G. The elastic energy of sharply bent nicked DNA Epl (Europhysics Letters). 90: 18003. DOI: 10.1209/0295-5075/90/18003  0.752
2010 Qu H, Wang Y, Tseng C, Zocchi G. Measurement of the Elastic Energy of Sharply Bent Ds DNA Biophysical Journal. 98: 467a. DOI: 10.1016/J.Bpj.2009.12.2540  0.751
2010 Wang A, Tseng C, Rolih B, Levine AJ, Zocchi G. Partitioning of the Elastic Energy in Protein-Dna Chimeras Biophysical Journal. 98: 43a. DOI: 10.1016/J.Bpj.2009.12.248  0.75
2010 Tseng C, Wang A, Zocchi G. Anisotropic Mechanical Response of the Enzyme Guanylate Kinase Perturbed by the DNA Molecular Spring Biophysical Journal. 98: 450a. DOI: 10.1016/J.Bpj.2009.12.2445  0.724
2009 Wang Y, Wang A, Qu H, Zocchi G. Protein-DNA chimeras: synthesis of two-arm chimeras and non-mechanical effects of the DNA spring. Journal of Physics. Condensed Matter : An Institute of Physics Journal. 21: 335103. PMID 21828597 DOI: 10.1088/0953-8984/21/33/335103  0.728
2009 Gonzalez R, Zeng Y, Ivanov V, Zocchi G. Bubbles in DNA melting. Journal of Physics. Condensed Matter : An Institute of Physics Journal. 21: 034102. PMID 21817247 DOI: 10.1088/0953-8984/21/3/034102  0.797
2009 Tseng CY, Wang A, Zocchi G, Rolih B, Levine AJ. Elastic energy of protein-DNA chimeras. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 80: 061912. PMID 20365195 DOI: 10.1103/Physreve.80.061912  0.744
2009 Zocchi G. Controlling proteins through molecular springs. Annual Review of Biophysics. 38: 75-88. PMID 19416060 DOI: 10.1146/Annurev.Biophys.050708.133637  0.353
2009 Wang A, Zocchi G. Elastic energy driven polymerization. Biophysical Journal. 96: 2344-52. PMID 19289060 DOI: 10.1016/J.Bpj.2008.11.065  0.586
2007 Hanne J, Zocchi G, Voulgarakis NK, Bishop AR, Rasmussen KØ. Opening rates of DNA hairpins: experiment and model. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 76: 011909. PMID 17677496 DOI: 10.1103/Physreve.76.011909  0.422
2007 Choi B, Zocchi G. Guanylate kinase, induced fit, and the allosteric spring probe. Biophysical Journal. 92: 1651-8. PMID 17142284 DOI: 10.1529/Biophysj.106.092866  0.606
2006 Choi B, Zocchi G. Mimicking cAMP-dependent allosteric control of protein kinase A through mechanical tension. Journal of the American Chemical Society. 128: 8541-8. PMID 16802820 DOI: 10.1021/Ja060903D  0.637
2006 Zeng Y, Zocchi G. Mismatches and bubbles in DNA. Biophysical Journal. 90: 4522-9. PMID 16565068 DOI: 10.1529/Biophysj.105.069591  0.575
2006 Zocchi G. Analytical assays based on detecting conformational changes of single molecules. Chemphyschem : a European Journal of Chemical Physics and Physical Chemistry. 7: 555-60. PMID 16514690 DOI: 10.1002/Cphc.200400603  0.409
2005 Choi B, Zocchi G, Wu Y, Chan S, Jeanne Perry L. Allosteric control through mechanical tension. Physical Review Letters. 95: 078102. PMID 16196826 DOI: 10.1103/Physrevlett.95.078102  0.61
2005 Dixit S, Singh-Zocchi M, Hanne J, Zocchi G. Mechanics of binding of a single integration-host-factor protein to DNA. Physical Review Letters. 94: 118101. PMID 15903892 DOI: 10.1103/Physrevlett.94.118101  0.506
2005 Ivanov V, Piontkovski D, Zocchi G. Local cooperativity mechanism in the DNA melting transition. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 71: 041909. PMID 15903703 DOI: 10.1103/Physreve.71.041909  0.791
2005 Choi B, Zocchi G, Canale S, Wu Y, Chan S, Perry LJ. Artificial allosteric control of maltose binding protein. Physical Review Letters. 94: 038103. PMID 15698328 DOI: 10.1103/Physrevlett.94.038103  0.637
2004 Ivanov V, Zeng Y, Zocchi G. Statistical mechanics of base stacking and pairing in DNA melting. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 70: 051907. PMID 15600656 DOI: 10.1103/Physreve.70.051907  0.785
2004 Zeng Y, Montrichok A, Zocchi G. Bubble nucleation and cooperativity in DNA melting. Journal of Molecular Biology. 339: 67-75. PMID 15123421 DOI: 10.1016/J.Jmb.2004.02.072  0.549
2003 Zeng Y, Montrichok A, Zocchi G. Length and statistical weight of bubbles in DNA melting. Physical Review Letters. 91: 148101. PMID 14611557 DOI: 10.1103/Physrevlett.91.148101  0.51
2003 Singh-Zocchi M, Dixit S, Ivanov V, Zocchi G. Single-molecule detection of DNA hybridization. Proceedings of the National Academy of Sciences of the United States of America. 100: 7605-10. PMID 12808129 DOI: 10.1073/Pnas.1337215100  0.769
2003 Montrichok A, Gruner G, Zocchi G. Trapping intermediates in the melting transition of DNA oligomers Europhysics Letters (Epl). 62: 452-458. DOI: 10.1209/Epl/I2003-00417-3  0.377
2003 Ivanov V, Grzeskowiak K, Zocchi G. Evidence for an Intermediate State in the B-to-Z Transition of DNA The Journal of Physical Chemistry B. 107: 12847-12850. DOI: 10.1021/Jp035593P  0.763
2002 Singh-Zocchi M, Hanne J, Zocchi G. Plastic deformation of protein monolayers. Biophysical Journal. 83: 2211-8. PMID 12324438 DOI: 10.1016/S0006-3495(02)73981-7  0.334
2000 Hansen A, Jensen MH, Sneppen K, Zocchi G. Proteins top–down: a statistical mechanics approach Physica a: Statistical Mechanics and Its Applications. 288: 21-30. DOI: 10.1016/S0378-4371(00)00412-X  0.31
1999 Hansen A, Jensen MH, Sneppen K, Zocchi G. A model for the thermodynamics of globular proteins Physica a: Statistical Mechanics and Its Applications. 270: 278-287. DOI: 10.1016/S0378-4371(99)00131-4  0.32
1999 Hansen A, Jensen M, Sneppen K, Zocchi G. Hot and cold denaturation of proteins: Critical aspects The European Physical Journal B. 10: 193-196. DOI: 10.1007/S100510050844  0.32
1998 Hansen A, Jensen MH, Sneppen K, Zocchi G. A hierarchical scheme for cooperativity and folding in proteins Physica a: Statistical Mechanics and Its Applications. 250: 355-361. DOI: 10.1016/S0378-4371(97)00567-0  0.319
1997 Zocchi G. Proteins unfold in steps. Proceedings of the National Academy of Sciences of the United States of America. 94: 10647-51. PMID 9380689 DOI: 10.1073/Pnas.94.20.10647  0.301
1996 Zocchi G. Mechanical measurement of the unfolding of a protein Europhysics Letters (Epl). 35: 633-638. DOI: 10.1209/Epl/I1996-00163-6  0.354
1991 Moses E, Zocchi G, Procaccia I, Libchaber A. The dynamics and interaction of laminar thermal plumes Epl. 14: 55-60. DOI: 10.1209/0295-5075/14/1/010  0.524
1991 Zocchi G, Moses E, Libchaber A. Coherent Structures in Thermal Turbulence Physics of Fluids a: Fluid Dynamics. 3: 2036-2036. DOI: 10.1063/1.4738857  0.491
1990 Zocchi G, Moses E, Libchaber A. Coherent structures in turbulent convection, an experimental study Physica a: Statistical Mechanics and Its Applications. 166: 387-407. DOI: 10.1016/0378-4371(90)90064-Y  0.503
1987 Zocchi G, Shaw BE, Libchaber A, Kadanoff LP. Finger narrowing under local perturbations in the Saffman-Taylor problem. Physical Review. A. 36: 1894-1900. PMID 9899072 DOI: 10.1103/Physreva.36.1894  0.483
1987 Jensen MH, Libchaber A, Pelcé P, Zocchi G. Effect of gravity on the Saffman-Taylor meniscus: Theory and experiment. Physical Review. A. 35: 2221-2227. PMID 9898398 DOI: 10.1103/Physreva.35.2221  0.49
1987 Tabeling P, Zocchi G, Libchaber A. An experimental study of the Saffman-Taylor instability Journal of Fluid Mechanics. 177: 67-82. DOI: 10.1017/S0022112087000867  0.526
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