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Damon A. Clark - Publications

Affiliations: 
MCDB Yale University, New Haven, CT 
Website:
http://clarklab.commons.yale.edu/
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65 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Vaziri PA, McDougle SD, Clark DA. Humans use local spectrotemporal correlations to detect rising and falling pitch. Biorxiv : the Preprint Server For Biology. PMID 39131316 DOI: 10.1101/2024.08.03.606481  0.317
2024 Wu N, Zhou B, Agrochao M, Clark DA. Broken time reversal symmetry in visual motion detection. Biorxiv : the Preprint Server For Biology. PMID 38915608 DOI: 10.1101/2024.06.08.598068  0.816
2024 Clark DA, Fitzgerald JE. Optimization in Visual Motion Estimation. Annual Review of Vision Science. PMID 38663426 DOI: 10.1146/annurev-vision-101623-025432  0.368
2023 Tanaka R, Zhou B, Agrochao M, Badwan BA, Au B, Matos NCB, Clark DA. Neural mechanisms to incorporate visual counterevidence in self-movement estimation. Current Biology : Cb. PMID 37918398 DOI: 10.1016/j.cub.2023.10.011  0.817
2023 Chen J, Gish CM, Fransen JW, Salazar-Gatzimas E, Clark DA, Borghuis BG. Direct comparison reveals algorithmic similarities in fly and mouse visual motion detection. Iscience. 26: 107928. PMID 37810236 DOI: 10.1016/j.isci.2023.107928  0.44
2023 Mano O, Choi M, Tanaka R, Creamer MS, Matos NCB, Shomar JW, Badwan BA, Clandinin TR, Clark DA. Long-timescale anti-directional rotation in optomotor behavior. Elife. 12. PMID 37751469 DOI: 10.7554/eLife.86076  0.819
2023 Tanaka R, Zhou B, Agrochao M, Badwan BA, Au B, Matos NCB, Clark DA. integrates visual evidence and counterevidence in self motion estimation. Biorxiv : the Preprint Server For Biology. PMID 36711843 DOI: 10.1101/2023.01.04.522814  0.811
2023 Mano O, Choi M, Tanaka R, Creamer MS, Matos NCB, Shomar J, Badwan BA, Clandinin TR, Clark DA. Long timescale anti-directional rotation in optomotor behavior. Biorxiv : the Preprint Server For Biology. PMID 36711627 DOI: 10.1101/2023.01.06.523055  0.819
2022 Kadakia N, Demir M, Michaelis BT, DeAngelis BD, Reidenbach MA, Clark DA, Emonet T. Odour motion sensing enhances navigation of complex plumes. Nature. 611: 754-761. PMID 36352224 DOI: 10.1038/s41586-022-05423-4  0.68
2022 Gonzalez-Suarez AD, Zavatone-Veth JA, Chen J, Matulis CA, Badwan BA, Clark DA. Excitatory and inhibitory neural dynamics jointly tune motion detection. Current Biology : Cb. PMID 35868321 DOI: 10.1016/j.cub.2022.06.075  0.816
2022 Tanaka R, Clark DA. Neural mechanisms to exploit positional geometry for collision avoidance. Current Biology : Cb. PMID 35508172 DOI: 10.1016/j.cub.2022.04.023  0.736
2022 Gonçalves AI, Zavatone-Veth JA, Carey MR, Clark DA. Parallel locomotor control strategies in mice and flies. Current Opinion in Neurobiology. 73: 102516. PMID 35158168 DOI: 10.1016/j.conb.2022.01.001  0.772
2022 Zhou B, Li Z, Kim S, Lafferty J, Clark DA. Shallow neural networks trained to detect collisions recover features of visual loom-selective neurons. Elife. 11. PMID 35023828 DOI: 10.7554/eLife.72067  0.327
2021 Mano O, Creamer MS, Badwan BA, Clark DA. Predicting individual neuron responses with anatomically constrained task optimization. Current Biology : Cb. PMID 34324832 DOI: 10.1016/j.cub.2021.06.090  0.806
2020 DeAngelis BD, Zavatone-Veth JA, Clark DA. Correction: The manifold structure of limb coordination in walking . Elife. 9. PMID 33275100 DOI: 10.7554/eLife.65214  0.729
2020 Demir M, Kadakia N, Anderson HD, Clark DA, Emonet T. Walking navigate complex plumes using stochastic decisions biased by the timing of odor encounters. Elife. 9. PMID 33140723 DOI: 10.7554/eLife.57524  0.615
2020 Agrochao M, Tanaka R, Salazar-Gatzimas E, Clark DA. Mechanism for analogous illusory motion perception in flies and humans. Proceedings of the National Academy of Sciences of the United States of America. PMID 32839324 DOI: 10.1073/Pnas.2002937117  0.818
2020 Tanaka R, Clark DA. Object-Displacement-Sensitive Visual Neurons Drive Freezing in Drosophila. Current Biology : Cb. PMID 32442466 DOI: 10.1016/j.cub.2020.04.068  0.726
2020 DeAngelis BD, Zavatone-Veth JA, Gonzalez-Suarez AD, Clark DA. Spatiotemporally precise optogenetic activation of sensory neurons in freely walking . Elife. 9. PMID 32319425 DOI: 10.7554/eLife.54183  0.8
2020 Shook BA, Wasko RR, Mano O, Rutenberg-Schoenberg M, Rudolph MC, Zirak B, Rivera-Gonzalez GC, López-Giráldez F, Zarini S, Rezza A, Clark DA, Rendl M, Rosenblum MD, Gerstein MB, Horsley V. Dermal Adipocyte Lipolysis and Myofibroblast Conversion Are Required for Efficient Skin Repair. Cell Stem Cell. PMID 32302523 DOI: 10.1016/J.Stem.2020.03.013  0.74
2020 Zavatone-Veth JA, Badwan BA, Clark DA. A minimal synaptic model for direction selective neurons in Drosophila. Journal of Vision. 20: 2. PMID 32040161 DOI: 10.1167/jov.20.2.2  0.814
2020 Matulis CA, Chen J, Gonzalez-Suarez AD, Behnia R, Clark DA. Heterogeneous Temporal Contrast Adaptation in Drosophila Direction-Selective Circuits. Current Biology : Cb. PMID 31928874 DOI: 10.1016/J.Cub.2019.11.077  0.47
2020 DeAngelis BD, Zavatone-Veth JA, Gonzalez-Suarez AD, Clark DA. Author response: Spatiotemporally precise optogenetic activation of sensory neurons in freely walking Drosophila Elife. DOI: 10.7554/Elife.54183.Sa2  0.369
2019 Mano O, Creamer MS, Matulis CA, Salazar-Gatzimas E, Chen J, Zavatone-Veth JA, Clark DA. Using slow frame rate imaging to extract fast receptive fields. Nature Communications. 10: 4979. PMID 31672963 DOI: 10.1038/S41467-019-12974-0  0.776
2019 Chen J, Mandel HB, Fitzgerald JE, Clark DA. Asymmetric ON-OFF processing of visual motion cancels variability induced by the structure of natural scenes. Elife. 8. PMID 31613221 DOI: 10.7554/eLife.47579  0.501
2019 Badwan BA, Creamer MS, Zavatone-Veth JA, Clark DA. Dynamic nonlinearities enable direction opponency in Drosophila elementary motion detectors. Nature Neuroscience. 22: 1318-1326. PMID 31346296 DOI: 10.1038/s41593-019-0443-y  0.823
2019 DeAngelis BD, Zavatone-Veth JA, Clark DA. The manifold structure of limb coordination in walking . Elife. 8. PMID 31250807 DOI: 10.7554/eLife.46409  0.792
2019 Creamer MS, Mano O, Tanaka R, Clark DA. A flexible geometry for panoramic visual and optogenetic stimulation during behavior and physiology. Journal of Neuroscience Methods. PMID 31103713 DOI: 10.1016/J.Jneumeth.2019.05.005  0.793
2019 Chen J, Mandel HB, Fitzgerald JE, Clark DA. Author response: Asymmetric ON-OFF processing of visual motion cancels variability induced by the structure of natural scenes Elife. DOI: 10.7554/Elife.47579.Sa2  0.441
2018 Salazar-Gatzimas E, Agrochao M, Fitzgerald JE, Clark DA. The Neuronal Basis of an Illusory Motion Percept Is Explained by Decorrelation of Parallel Motion Pathways. Current Biology : Cb. PMID 30471993 DOI: 10.1016/J.Cub.2018.10.007  0.82
2018 Creamer MS, Mano O, Clark DA. Visual Control of Walking Speed in Drosophila. Neuron. PMID 30415994 DOI: 10.1016/J.Neuron.2018.10.028  0.814
2018 Astigarraga S, Douthit J, Tarnogorska D, Creamer MS, Mano O, Clark DA, Meinertzhagen IA, Treisman JE. Drosophila Sidekick is required in developing photoreceptors to enable visual motion detection. Development (Cambridge, England). PMID 29361567 DOI: 10.1242/Dev.158246  0.816
2017 Gorur-Shandilya S, Demir M, Long J, Clark DA, Emonet T. Olfactory receptor neurons use gain control and complementary kinetics to encode intermittent odorant stimuli. Elife. 6. PMID 28653907 DOI: 10.7554/Elife.27670  0.641
2017 Demb JB, Clark DA. Vision: These retinas are made for walkin'. Nature. PMID 28607483 DOI: 10.1038/nature22505  0.508
2017 Mano O, Clark DA. Graphics Processing Unit-Accelerated Code for Computing Second-Order Wiener Kernels and Spike-Triggered Covariance. Plos One. 12: e0169842. PMID 28068420 DOI: 10.1371/Journal.Pone.0169842  0.78
2017 Gorur-Shandilya S, Demir M, Long J, Clark DA, Emonet T. Author response: Olfactory receptor neurons use gain control and complementary kinetics to encode intermittent odorant stimuli Elife. DOI: 10.7554/Elife.27670.025  0.638
2016 Clark DA, Demb JB. Parallel Computations in Insect and Mammalian Visual Motion Processing. Current Biology : Cb. 26: R1062-R1072. PMID 27780048 DOI: 10.1016/j.cub.2016.08.003  0.46
2016 Salazar-Gatzimas E, Chen J, Creamer MS, Mano O, Mandel HB, Matulis CA, Pottackal J, Clark DA. Direct Measurement of Correlation Responses in Drosophila Elementary Motion Detectors Reveals Fast Timescale Tuning. Neuron. 92: 227-239. PMID 27710784 DOI: 10.1016/J.Neuron.2016.09.017  0.837
2015 Fitzgerald JE, Clark DA. Nonlinear circuits for naturalistic visual motion estimation. Elife. 4. PMID 26499494 DOI: 10.7554/eLife.09123  0.513
2015 Fitzgerald JE, Clark DA. Author response: Nonlinear circuits for naturalistic visual motion estimation Elife. DOI: 10.7554/Elife.09123.020  0.416
2014 Behnia R, Clark DA, Carter AG, Clandinin TR, Desplan C. Processing properties of ON and OFF pathways for Drosophila motion detection. Nature. 512: 427-30. PMID 25043016 DOI: 10.1038/Nature13427  0.687
2014 Velez MM, Wernet MF, Clark DA, Clandinin TR. Walking Drosophila align with the e-vector of linearly polarized light through directed modulation of angular acceleration. Journal of Comparative Physiology. a, Neuroethology, Sensory, Neural, and Behavioral Physiology. 200: 603-14. PMID 24810784 DOI: 10.1007/s00359-014-0910-6  0.793
2014 Clark DA, Fitzgerald JE, Ales JM, Gohl DM, Silies MA, Norcia AM, Clandinin TR. Flies and humans share a motion estimation strategy that exploits natural scene statistics. Nature Neuroscience. 17: 296-303. PMID 24390225 DOI: 10.1038/Nn.3600  0.816
2013 Clark DA, Benichou R, Meister M, Azeredo da Silveira R. Dynamical adaptation in photoreceptors. Plos Computational Biology. 9: e1003289. PMID 24244119 DOI: 10.1371/journal.pcbi.1003289  0.545
2013 Silies M, Gohl DM, Fisher YE, Freifeld L, Clark DA, Clandinin TR. Modular use of peripheral input channels tunes motion-detecting circuitry. Neuron. 79: 111-27. PMID 23849199 DOI: 10.1016/J.Neuron.2013.04.029  0.805
2013 Freifeld L, Clark DA, Schnitzer MJ, Horowitz MA, Clandinin TR. GABAergic lateral interactions tune the early stages of visual processing in Drosophila. Neuron. 78: 1075-89. PMID 23791198 DOI: 10.1016/j.neuron.2013.04.024  0.678
2013 Clark DA, Freifeld L, Clandinin TR. Mapping and cracking sensorimotor circuits in genetic model organisms. Neuron. 78: 583-95. PMID 23719159 DOI: 10.1016/j.neuron.2013.05.006  0.6
2013 Ales J, Clark D, Fitzgerald J, Gohl D, Silies M, Clandinin T, Norcia A. Computation of high-order correlations underlies edge-polarity selective motion processing Journal of Vision. 13: 974-974. DOI: 10.1167/13.9.974  0.787
2012 Omura DT, Clark DA, Samuel AD, Horvitz HR. Dopamine signaling is essential for precise rates of locomotion by C. elegans. Plos One. 7: e38649. PMID 22719914 DOI: 10.1371/journal.pone.0038649  0.535
2012 Wernet MF, Velez MM, Clark DA, Baumann-Klausener F, Brown JR, Klovstad M, Labhart T, Clandinin TR. Genetic dissection reveals two separate retinal substrates for polarization vision in Drosophila. Current Biology : Cb. 22: 12-20. PMID 22177904 DOI: 10.1016/j.cub.2011.11.028  0.754
2011 Clark DA, Bursztyn L, Horowitz MA, Schnitzer MJ, Clandinin TR. Defining the computational structure of the motion detector in Drosophila. Neuron. 70: 1165-77. PMID 21689602 DOI: 10.1016/j.neuron.2011.05.023  0.717
2010 Clark DA, de Vries SE, Clandinin TR. Watching the fly brain in action. Nature Methods. 7: 505-6. PMID 20588268 DOI: 10.1038/nmeth0710-505  0.664
2009 Srivastava N, Clark DA, Samuel AD. Temporal analysis of stochastic turning behavior of swimming C. elegans. Journal of Neurophysiology. 102: 1172-9. PMID 19535479 DOI: 10.1152/jn.90952.2008  0.564
2007 Chi CA, Clark DA, Lee S, Biron D, Luo L, Gabel CV, Brown J, Sengupta P, Samuel AD. Temperature and food mediate long-term thermotactic behavioral plasticity by association-independent mechanisms in C. elegans. The Journal of Experimental Biology. 210: 4043-52. PMID 17981872 DOI: 10.1242/Jeb.006551  0.631
2007 Gabel CV, Gabel H, Pavlichin D, Kao A, Clark DA, Samuel AD. Neural circuits mediate electrosensory behavior in Caenorhabditis elegans. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 27: 7586-96. PMID 17626220 DOI: 10.1523/Jneurosci.0775-07.2007  0.604
2007 Korta J, Clark DA, Gabel CV, Mahadevan L, Samuel AD. Mechanosensation and mechanical load modulate the locomotory gait of swimming C. elegans. The Journal of Experimental Biology. 210: 2383-9. PMID 17575043 DOI: 10.1242/Jeb.004572  0.568
2007 Clark DA, Gabel CV, Gabel H, Samuel AD. Temporal activity patterns in thermosensory neurons of freely moving Caenorhabditis elegans encode spatial thermal gradients. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 27: 6083-90. PMID 17553981 DOI: 10.1523/Jneurosci.1032-07.2007  0.598
2007 Clark DA, Gabel CV, Lee TM, Samuel AD. Short-term adaptation and temporal processing in the cryophilic response of Caenorhabditis elegans. Journal of Neurophysiology. 97: 1903-10. PMID 17151225 DOI: 10.1152/Jn.00892.2006  0.583
2006 Luo L, Clark DA, Biron D, Mahadevan L, Samuel AD. Sensorimotor control during isothermal tracking in Caenorhabditis elegans. The Journal of Experimental Biology. 209: 4652-62. PMID 17114399 DOI: 10.1242/Jeb.02590  0.65
2006 Biron D, Shibuya M, Gabel C, Wasserman SM, Clark DA, Brown A, Sengupta P, Samuel AD. A diacylglycerol kinase modulates long-term thermotactic behavioral plasticity in C. elegans. Nature Neuroscience. 9: 1499-505. PMID 17086178 DOI: 10.1038/Nn1796  0.568
2006 Clark DA, Biron D, Sengupta P, Samuel AD. The AFD sensory neurons encode multiple functions underlying thermotactic behavior in Caenorhabditis elegans. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 26: 7444-51. PMID 16837592 DOI: 10.1523/Jneurosci.1137-06.2006  0.611
2006 Chung SH, Clark DA, Gabel CV, Mazur E, Samuel AD. The role of the AFD neuron in C. elegans thermotaxis analyzed using femtosecond laser ablation. Bmc Neuroscience. 7: 30. PMID 16600041 DOI: 10.1186/1471-2202-7-30  0.584
2006 Samuel ADT, Chung SH, Clark DA, Gabel CV, Chang C, Murthy V, Mazur E. Femtosecond laser dissection in C. elegans neural circuits Proceedings of Spie - the International Society For Optical Engineering. 6108. DOI: 10.1117/12.657396  0.682
2005 Clark DA, Grant LC. The bacterial chemotactic response reflects a compromise between transient and steady-state behavior. Proceedings of the National Academy of Sciences of the United States of America. 102: 9150-5. PMID 15967993 DOI: 10.1073/pnas.0407659102  0.317
2002 Wang SS, Mitra PP, Clark DA. How did brains evolve? Nature. 415: 135-135. DOI: 10.1038/415135a  0.505
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