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Alexander A. Pollen - Publications

Affiliations: 
Stanford University, Palo Alto, CA 
Area:
brain evolution & genetics
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38 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Andrews MG, Mukhtar T, Eze UC, Simoneau CR, Perez Y, Mostajo-Radji MA, Wang S, Velmeshev D, Salma J, Kumar GR, Pollen AA, Crouch EE, Ott M, Kriegstein AR. Tropism of SARS-CoV-2 for Developing Human Cortical Astrocytes. Biorxiv : the Preprint Server For Biology. PMID 33469577 DOI: 10.1101/2021.01.17.427024  0.759
2020 Song M, Pebworth MP, Yang X, Abnousi A, Fan C, Wen J, Rosen JD, Choudhary MNK, Cui X, Jones IR, Bergenholtz S, Eze UC, Juric I, Li B, Maliskova L, ... ... Pollen AA, et al. Cell-type-specific 3D epigenomes in the developing human cortex. Nature. PMID 33057195 DOI: 10.1038/s41586-020-2825-4  0.621
2020 Dai HQ, Liang Z, Chang AN, Chapdelaine-Williams AM, Alvarado B, Pollen AA, Alt FW, Schwer B. Direct analysis of brain phenotypes via neural blastocyst complementation. Nature Protocols. PMID 32778838 DOI: 10.1038/S41596-020-0364-Y  0.415
2020 Porubsky D, Sanders AD, Höps W, Hsieh P, Sulovari A, Li R, Mercuri L, Sorensen M, Murali SC, Gordon D, Cantsilieris S, Pollen AA, Ventura M, Antonacci F, Marschall T, et al. Recurrent inversion toggling and great ape genome evolution. Nature Genetics. PMID 32541924 DOI: 10.1038/S41588-020-0646-X  0.352
2020 Bhaduri A, Andrews MG, Mancia Leon W, Jung D, Shin D, Allen D, Jung D, Schmunk G, Haeussler M, Salma J, Pollen AA, Nowakowski TJ, Kriegstein AR. Cell stress in cortical organoids impairs molecular subtype specification. Nature. PMID 31996853 DOI: 10.1038/S41586-020-1962-0  0.799
2019 Mostajo-Radji MA, Schmitz MT, Montoya ST, Pollen AA. Reverse Engineering Human Brain Evolution Using Organoid Models. Brain Research. 146582. PMID 31809699 DOI: 10.1016/J.Brainres.2019.146582  0.768
2019 Sulovari A, Li R, Audano PA, Porubsky D, Vollger MR, Logsdon GA, Warren WC, Pollen AA, Chaisson MJP, Eichler EE. Human-specific tandem repeat expansion and differential gene expression during primate evolution. Proceedings of the National Academy of Sciences of the United States of America. PMID 31659027 DOI: 10.1073/Pnas.1912175116  0.464
2019 Pollen A, Pavlovic BJ. Getting to the heart of cardiovascular evolution in humans. Elife. 8. PMID 31135336 DOI: 10.7554/Elife.47807  0.744
2019 Fiddes IT, Pollen AA, Davis JM, Sikela JM. Paired involvement of human-specific Olduvai domains and NOTCH2NL genes in human brain evolution. Human Genetics. PMID 31087184 DOI: 10.1007/S00439-019-02018-4  0.467
2019 Mayer S, Chen J, Velmeshev D, Mayer A, Eze UC, Bhaduri A, Cunha CE, Jung D, Arjun A, Li E, Alvarado B, Wang S, Lovegren N, Gonzales ML, Szpankowski L, ... ... Pollen AA, et al. Multimodal Single-Cell Analysis Reveals Physiological Maturation in the Developing Human Neocortex. Neuron. PMID 30770253 DOI: 10.1016/J.Neuron.2019.01.027  0.766
2019 Pollen AA, Bhaduri A, Andrews MG, Nowakowski TJ, Meyerson OS, Mostajo-Radji MA, Di Lullo E, Alvarado B, Bedolli M, Dougherty ML, Fiddes IT, Kronenberg ZN, Shuga J, Leyrat AA, West JA, et al. Establishing Cerebral Organoids as Models of Human-Specific Brain Evolution. Cell. 176: 743-756.e17. PMID 30735633 DOI: 10.1016/J.Cell.2019.01.017  0.784
2018 Mostajo-Radji MA, Pollen AA. Physiological Models of Human Neuronal Development and Disease. Neuron. 100: 1025-1027. PMID 30521777 DOI: 10.1016/J.Neuron.2018.11.026  0.744
2018 Nowakowski TJ, Rani N, Golkaram M, Zhou HR, Alvarado B, Huch K, West JA, Leyrat A, Pollen AA, Kriegstein AR, Petzold LR, Kosik KS. Regulation of cell-type-specific transcriptomes by microRNA networks during human brain development. Nature Neuroscience. PMID 30455455 DOI: 10.1038/S41593-018-0265-3  0.697
2018 Bhaduri A, Nowakowski TJ, Pollen AA, Kriegstein AR. Identification of cell types in a mouse brain single-cell atlas using low sampling coverage. Bmc Biology. 16: 113. PMID 30309354 DOI: 10.1186/S12915-018-0580-X  0.729
2018 Dougherty ML, Underwood JG, Nelson BJ, Tseng E, Munson KM, Penn O, Nowakowski TJ, Pollen AA, Eichler EE. Transcriptional fates of human-specific segmental duplications in brain. Genome Research. PMID 30228200 DOI: 10.1101/Gr.237610.118  0.647
2018 Mostajo-Radji MA, Pollen AA. Postmitotic Fate Refinement in the Subplate. Cell Stem Cell. 23: 7-9. PMID 29979992 DOI: 10.1016/J.Stem.2018.06.017  0.721
2018 Kronenberg ZN, Fiddes IT, Gordon D, Murali S, Cantsilieris S, Meyerson OS, Underwood JG, Nelson BJ, Chaisson MJP, Dougherty ML, Munson KM, Hastie AR, Diekhans M, Hormozdiari F, Lorusso N, ... ... Pollen A, et al. High-resolution comparative analysis of great ape genomes. Science (New York, N.Y.). 360. PMID 29880660 DOI: 10.1126/Science.Aar6343  0.399
2018 Fiddes IT, Lodewijk GA, Mooring M, Bosworth CM, Ewing AD, Mantalas GL, Novak AM, van den Bout A, Bishara A, Rosenkrantz JL, Lorig-Roach R, Field AR, Haeussler M, Russo L, Bhaduri A, ... ... Pollen AA, et al. Human-Specific NOTCH2NL Genes Affect Notch Signaling and Cortical Neurogenesis. Cell. 173: 1356-1369.e22. PMID 29856954 DOI: 10.1016/J.Cell.2018.03.051  0.77
2017 Nowakowski TJ, Bhaduri A, Pollen AA, Alvarado B, Mostajo-Radji MA, Di Lullo E, Haeussler M, Sandoval-Espinosa C, Liu SJ, Velmeshev D, Ounadjela JR, Shuga J, Wang X, Lim DA, West JA, et al. Spatiotemporal gene expression trajectories reveal developmental hierarchies of the human cortex. Science (New York, N.Y.). 358: 1318-1323. PMID 29217575 DOI: 10.1126/Science.Aap8809  0.821
2017 Bershteyn M, Nowakowski TJ, Pollen AA, Di Lullo E, Nene A, Wynshaw-Boris A, Kriegstein AR. Human iPSC-Derived Cerebral Organoids Model Cellular Features of Lissencephaly and Reveal Prolonged Mitosis of Outer Radial Glia. Cell Stem Cell. PMID 28111201 DOI: 10.1016/J.Stem.2016.12.007  0.761
2016 Retallack H, Di Lullo E, Arias C, Knopp KA, Laurie MT, Sandoval-Espinosa C, Mancia Leon WR, Krencik R, Ullian EM, Spatazza J, Pollen AA, Mandel-Brehm C, Nowakowski TJ, Kriegstein AR, DeRisi JL. Zika virus cell tropism in the developing human brain and inhibition by azithromycin. Proceedings of the National Academy of Sciences of the United States of America. PMID 27911847 DOI: 10.1073/pnas.1618029113  0.721
2016 Müller S, Liu SJ, Di Lullo E, Malatesta M, Pollen AA, Nowakowski TJ, Kohanbash G, Aghi M, Kriegstein AR, Lim DA, Diaz A. Single-cell sequencing maps gene expression to mutational phylogenies in PDGF- and EGF-driven gliomas. Molecular Systems Biology. 12: 889. PMID 27888226 DOI: 10.15252/Msb.20166969  0.712
2016 Pollen AA, Kriegstein AR. Primate Neurons Flex Their Musclin. Neuron. 92: 681-683. PMID 27883900 DOI: 10.1016/J.Neuron.2016.11.024  0.563
2016 Nowakowski TJ, Pollen AA, Sandoval-Espinosa C, Kriegstein AR. Transformation of the Radial Glia Scaffold Demarcates Two Stages of Human Cerebral Cortex Development. Neuron. 91: 1219-27. PMID 27657449 DOI: 10.1016/J.Neuron.2016.09.005  0.74
2016 Diaz A, Liu SJ, Sandoval C, Pollen A, Nowakowski TJ, Lim DA, Kriegstein A. SCell: integrated analysis of single-cell RNA-seq data. Bioinformatics (Oxford, England). PMID 27153637 DOI: 10.1093/Bioinformatics/Btw201  0.699
2016 Liu SJ, Nowakowski TJ, Pollen AA, Lui JH, Horlbeck MA, Attenello FJ, He D, Weissman JS, Kriegstein AR, Diaz AA, Lim DA. Single-cell analysis of long non-coding RNAs in the developing human neocortex. Genome Biology. 17: 67. PMID 27081004 DOI: 10.1186/S13059-016-0932-1  0.792
2016 Nowakowski TJ, Pollen AA, Di Lullo E, Sandoval-Espinosa C, Bershteyn M, Kriegstein AR. Expression Analysis Highlights AXL as a Candidate Zika Virus Entry Receptor in Neural Stem Cells. Cell Stem Cell. PMID 27038591 DOI: 10.1016/J.Stem.2016.03.012  0.776
2015 Pollen AA, Nowakowski TJ, Chen J, Retallack H, Sandoval-Espinosa C, Nicholas CR, Shuga J, Liu SJ, Oldham MC, Diaz A, Lim DA, Leyrat AA, West JA, Kriegstein AR. Molecular Identity of Human Outer Radial Glia during Cortical Development. Cell. 163: 55-67. PMID 26406371 DOI: 10.1016/J.Cell.2015.09.004  0.766
2014 Lui JH, Nowakowski TJ, Pollen AA, Javaherian A, Kriegstein AR, Oldham MC. Radial glia require PDGFD-PDGFRβ signalling in human but not mouse neocortex. Nature. 515: 264-8. PMID 25391964 DOI: 10.1038/Nature13973  0.802
2014 Pollen AA, Nowakowski TJ, Shuga J, Wang X, Leyrat AA, Lui JH, Li N, Szpankowski L, Fowler B, Chen P, Ramalingam N, Sun G, Thu M, Norris M, Lebofsky R, et al. Low-coverage single-cell mRNA sequencing reveals cellular heterogeneity and activated signaling pathways in developing cerebral cortex. Nature Biotechnology. 32: 1053-8. PMID 25086649 DOI: 10.1038/Nbt.2967  0.791
2014 Molnár Z, Pollen A. How unique is the human neocortex? Development (Cambridge, England). 141: 11-6. PMID 24346696 DOI: 10.1242/Dev.101279  0.592
2012 Jones FC, Grabherr MG, Chan YF, Russell P, Mauceli E, Johnson J, Swofford R, Pirun M, Zody MC, White S, Birney E, Searle S, Schmutz J, Grimwood J, Dickson MC, ... ... Pollen AA, et al. The genomic basis of adaptive evolution in threespine sticklebacks. Nature. 484: 55-61. PMID 22481358 DOI: 10.1038/Nature10944  0.755
2011 McLean CY, Reno PL, Pollen AA, Bassan AI, Capellini TD, Guenther C, Indjeian VB, Lim X, Menke DB, Schaar BT, Wenger AM, Bejerano G, Kingsley DM. Human-specific loss of regulatory DNA and the evolution of human-specific traits. Nature. 471: 216-9. PMID 21390129 DOI: 10.1038/Nature09774  0.792
2009 Machado HE, Pollen AA, Hofmann HA, Renn SC. Interspecific profiling of gene expression informed by comparative genomic hybridization: A review and a novel approach in African cichlid fishes. Integrative and Comparative Biology. 49: 644-59. PMID 21665847 DOI: 10.1093/Icb/Icp080  0.609
2008 Pollen AA, Hofmann HA. Beyond neuroanatomy: novel approaches to studying brain evolution. Brain, Behavior and Evolution. 72: 145-58. PMID 18836260 DOI: 10.1159/000151474  0.618
2007 Miller CT, Beleza S, Pollen AA, Schluter D, Kittles RA, Shriver MD, Kingsley DM. cis-Regulatory changes in Kit ligand expression and parallel evolution of pigmentation in sticklebacks and humans. Cell. 131: 1179-89. PMID 18083106 DOI: 10.1016/J.Cell.2007.10.055  0.608
2007 Cheung AF, Pollen AA, Tavare A, DeProto J, Molnár Z. Comparative aspects of cortical neurogenesis in vertebrates. Journal of Anatomy. 211: 164-76. PMID 17634059 DOI: 10.1111/J.1469-7580.2007.00769.X  0.759
2007 Pollen AA, Dobberfuhl AP, Scace J, Igulu MM, Renn SC, Shumway CA, Hofmann HA. Environmental complexity and social organization sculpt the brain in Lake Tanganyikan cichlid fish. Brain, Behavior and Evolution. 70: 21-39. PMID 17389793 DOI: 10.1159/000101067  0.578
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