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Ravi Allada - Publications

Affiliations: 
Northwestern University, Evanston, IL 
Area:
Circadian rhythms
Website:
http://www.northwestern.edu/neurobiology/faculty/allada.html
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72 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Xu B, Hwangbo DS, Saurabh S, Rosensweig C, Allada R, Kath WL, Braun R. Temperature-driven coordination of circadian transcriptome regulation. Biorxiv : the Preprint Server For Biology. PMID 37961403 DOI: 10.1101/2023.10.27.563979  0.802
2023 Hwangbo DS, Kwon YJ, Iwanaszko M, Jiang P, Abbasi L, Wright N, Alli S, Hutchison AL, Dinner AR, Braun RI, Allada R. Dietary Restriction Impacts Peripheral Circadian Clock Output Important for Longevity in . Biorxiv : the Preprint Server For Biology. PMID 36711760 DOI: 10.1101/2023.01.04.522718  0.8
2022 Andreani T, Rosensweig C, Sisobhan S, Ogunlana E, Kath W, Allada R. Circadian programming of the ellipsoid body sleep homeostat in . Elife. 11. PMID 35735904 DOI: 10.7554/eLife.74327  0.336
2021 Lee J, Lim C, Han TH, Andreani T, Moye M, Curran J, Johnson E, Kath WL, Diekman CO, Lear BC, Allada R. The E3 ubiquitin ligase adaptor links the core circadian clock to neuropeptide and behavioral rhythms. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34799448 DOI: 10.1073/pnas.2110767118  0.643
2021 Zhang MY, Lear BC, Allada R. The microtubule associated protein tau suppresses the axonal distribution of PDF neuropeptide and mitochondria in circadian clock neurons. Human Molecular Genetics. PMID 34750631 DOI: 10.1093/hmg/ddab303  0.342
2021 Ness-Cohn E, Allada R, Braun R. Comment on "Circadian rhythms in the absence of the clock gene ". Science (New York, N.Y.). 372. PMID 33859007 DOI: 10.1126/science.abe9230  0.42
2020 Kula-Eversole E, Lee DH, Samba I, Yildirim E, Levine DC, Hong HK, Lear BC, Bass J, Rosbash M, Allada R. Phosphatase of Regenerating Liver-1 Selectively Times Circadian Behavior in Darkness via Function in PDF Neurons and Dephosphorylation of TIMELESS. Current Biology : Cb. PMID 33157022 DOI: 10.1016/j.cub.2020.10.013  0.645
2020 Ness-Cohn E, Iwanaszko M, Kath WL, Allada R, Braun R. TimeTrial: An Interactive Application for Optimizing the Design and Analysis of Transcriptomic Times-Series Data in Circadian Biology Research. Journal of Biological Rhythms. 748730420934672. PMID 32613882 DOI: 10.1177/0748730420934672  0.397
2020 Alpert MH, Frank DD, Kaspi E, Flourakis M, Zaharieva EE, Allada R, Para A, Gallio M. A Circuit Encoding Absolute Cold Temperature in Drosophila. Current Biology : Cb. PMID 32442464 DOI: 10.1016/J.Cub.2020.04.038  0.383
2019 Xu F, Kula-Eversole E, Iwanaszko M, Lim C, Allada R. Ataxin2 functions via CrebA to mediate Huntingtin toxicity in circadian clock neurons. Plos Genetics. 15: e1008356. PMID 31593562 DOI: 10.1371/Journal.Pgen.1008356  0.558
2019 Xu F, Kula-Eversole E, Iwanaszko M, Hutchison AL, Dinner A, Allada R. Circadian Clocks Function in Concert with Heat Shock Organizing Protein to Modulate Mutant Huntingtin Aggregation and Toxicity. Cell Reports. 27: 59-70.e4. PMID 30943415 DOI: 10.1016/J.Celrep.2019.03.015  0.492
2019 Braun R, Kath WL, Iwanaszko M, Kula-Eversole E, Abbott SM, Reid KJ, Zee PC, Allada R. Reply to Laing et al.: Accurate prediction of circadian time across platforms. Proceedings of the National Academy of Sciences of the United States of America. 116: 5206-5208. PMID 30872489 DOI: 10.1073/Pnas.1819173116  0.356
2019 Andreani-Fabroni TS, Allada R. 0015 Homeostatic Response To Sleep Deprivation Is Suppressed In The Evening In Drosophila Sleep. 42: A6-A6. DOI: 10.1093/Sleep/Zsz067.014  0.309
2018 Braun R, Kath WL, Iwanaszko M, Kula-Eversole E, Abbott SM, Reid KJ, Zee PC, Allada R. Universal method for robust detection of circadian state from gene expression. Proceedings of the National Academy of Sciences of the United States of America. PMID 30201705 DOI: 10.1073/Pnas.1800314115  0.388
2018 Hutchison AL, Allada R, Dinner AR. Bootstrapping and Empirical Bayes Methods Improve Rhythm Detection in Sparsely Sampled Data. Journal of Biological Rhythms. 33: 339-349. PMID 30101659 DOI: 10.1177/0748730418789536  0.315
2018 van Alphen B, Allada R. 0078 Proboscis Extensions During Sleep: A Novel Sleep Stage In Drosophila With A Functional Role In Waste Clearance? Sleep. 41: A31-A32. DOI: 10.1093/Sleep/Zsy061.077  0.304
2017 Hughes ME, Abruzzi KC, Allada R, Anafi R, Arpat AB, Asher G, Baldi P, de Bekker C, Bell-Pedersen D, Blau J, Brown S, Ceriani MF, Chen Z, Chiu JC, Cox J, et al. Guidelines for Genome-Scale Analysis of Biological Rhythms. Journal of Biological Rhythms. 748730417728663. PMID 29098954 DOI: 10.1177/0748730417728663  0.493
2017 Allada R, Cirelli C, Sehgal A. Molecular Mechanisms of Sleep Homeostasis in Flies and Mammals. Cold Spring Harbor Perspectives in Biology. PMID 28432135 DOI: 10.1101/Cshperspect.A027730  0.341
2017 Song A, Severini T, Allada R. How jet lag impairs Major League Baseball performance. Proceedings of the National Academy of Sciences of the United States of America. PMID 28115724 DOI: 10.1073/Pnas.1608847114  0.375
2017 van Alphen B, Liu G, Andreani T, Flourakis M, Kilman V, Perisse E, Waddell S, Allada R. 0101 MUSHROOM BODY GAMMA LOBE ACTIVITY REDUCES AROUSALS THRESHOLDS AND SLEEP THROUGH PROTEIN KINASE A Sleep. 40: A38-A38. DOI: 10.1093/Sleepj/Zsx050.100  0.764
2016 Flourakis M, Allada R. And the beat goes on: from clock to behavior. Nature Neuroscience. 19: 529-30. PMID 27021942 DOI: 10.1038/Nn.4278  0.471
2015 Andreani TS, Itoh TQ, Yildirim E, Hwangbo DS, Allada R. Genetics of Circadian Rhythms. Sleep Medicine Clinics. 10: 413-21. PMID 26568119 DOI: 10.1016/J.Jsmc.2015.08.007  0.826
2015 Flourakis M, Kula-Eversole E, Hutchison AL, Han TH, Aranda K, Moose DL, White KP, Dinner AR, Lear BC, Ren D, Diekman CO, Raman IM, Allada R. A Conserved Bicycle Model for Circadian Clock Control of Membrane Excitability. Cell. 162: 836-48. PMID 26276633 DOI: 10.1016/J.Cell.2015.07.036  0.617
2015 Jiang P, Scarpa JR, Fitzpatrick K, Losic B, Gao VD, Hao K, Summa KC, Yang HS, Zhang B, Allada R, Vitaterna MH, Turek FW, Kasarskis A. A systems approach identifies networks and genes linking sleep and stress: implications for neuropsychiatric disorders. Cell Reports. 11: 835-48. PMID 25921536 DOI: 10.1016/J.Celrep.2015.04.003  0.357
2015 Hutchison AL, Maienschein-Cline M, Chiang AH, Tabei SM, Gudjonson H, Bahroos N, Allada R, Dinner AR. Improved statistical methods enable greater sensitivity in rhythm detection for genome-wide data. Plos Computational Biology. 11: e1004094. PMID 25793520 DOI: 10.1371/Journal.Pcbi.1004094  0.406
2015 Flourakis M, Allada R. Patch-clamp electrophysiology in Drosophila circadian pacemaker neurons. Methods in Enzymology. 552: 23-44. PMID 25707271 DOI: 10.1016/Bs.Mie.2014.10.005  0.458
2014 van Alphen B, Allada R. Knock, knock to reset the clock: mechanosensation and circadian rhythms. Cell Metabolism. 19: 739-40. PMID 24807220 DOI: 10.1016/J.Cmet.2014.04.011  0.467
2014 Seluzicki A, Flourakis M, Kula-Eversole E, Zhang L, Kilman V, Allada R. Dual PDF signaling pathways reset clocks via TIMELESS and acutely excite target neurons to control circadian behavior. Plos Biology. 12: e1001810. PMID 24643294 DOI: 10.1371/Journal.Pbio.1001810  0.764
2013 Lear BC, Darrah EJ, Aldrich BT, Gebre S, Scott RL, Nash HA, Allada R. UNC79 and UNC80, putative auxiliary subunits of the NARROW ABDOMEN ion channel, are indispensable for robust circadian locomotor rhythms in Drosophila. Plos One. 8: e78147. PMID 24223770 DOI: 10.1371/Journal.Pone.0078147  0.473
2013 Lim C, Allada R. Emerging roles for post-transcriptional regulation in circadian clocks. Nature Neuroscience. 16: 1544-50. PMID 24165681 DOI: 10.1038/Nn.3543  0.524
2013 Lim C, Allada R. ATAXIN-2 activates PERIOD translation to sustain circadian rhythms in Drosophila. Science (New York, N.Y.). 340: 875-9. PMID 23687047 DOI: 10.1126/Science.1234785  0.463
2012 Pfeiffenberger C, Allada R. Cul3 and the BTB adaptor insomniac are key regulators of sleep homeostasis and a dopamine arousal pathway in Drosophila. Plos Genetics. 8: e1003003. PMID 23055946 DOI: 10.1371/Journal.Pgen.1003003  0.357
2011 Lim C, Lee J, Choi C, Kilman VL, Kim J, Park SM, Jang SK, Allada R, Choe J. The novel gene twenty-four defines a critical translational step in the Drosophila clock. Nature. 470: 399-403. PMID 21331043 DOI: 10.1038/Nature09728  0.825
2010 Pfeiffenberger C, Lear BC, Keegan KP, Allada R. Processing sleep data created with the Drosophila Activity Monitoring (DAM) System. Cold Spring Harbor Protocols. 2010: pdb.prot5520. PMID 21041393 DOI: 10.1101/Pdb.Prot5520  0.426
2010 Pfeiffenberger C, Lear BC, Keegan KP, Allada R. Processing circadian data collected from the Drosophila Activity Monitoring (DAM) System. Cold Spring Harbor Protocols. 2010: pdb.prot5519. PMID 21041392 DOI: 10.1101/Pdb.Prot5519  0.47
2010 Pfeiffenberger C, Lear BC, Keegan KP, Allada R. Locomotor activity level monitoring using the Drosophila Activity Monitoring (DAM) System. Cold Spring Harbor Protocols. 2010: pdb.prot5518. PMID 21041391 DOI: 10.1101/Pdb.Prot5518  0.441
2010 Kula-Eversole E, Nagoshi E, Shang Y, Rodriguez J, Allada R, Rosbash M. Surprising gene expression patterns within and between PDF-containing circadian neurons in Drosophila. Proceedings of the National Academy of Sciences of the United States of America. 107: 13497-502. PMID 20624977 DOI: 10.1073/Pnas.1002081107  0.713
2010 Zhang L, Chung BY, Lear BC, Kilman VL, Liu Y, Mahesh G, Meissner RA, Hardin PE, Allada R. DN1(p) circadian neurons coordinate acute light and PDF inputs to produce robust daily behavior in Drosophila. Current Biology : Cb. 20: 591-9. PMID 20362452 DOI: 10.1016/J.Cub.2010.02.056  0.808
2010 Allada R, Chung BY. Circadian organization of behavior and physiology in Drosophila. Annual Review of Physiology. 72: 605-24. PMID 20148690 DOI: 10.1146/Annurev-Physiol-021909-135815  0.705
2010 Allada R, Emery P. Genetic Regulation of Circadian Rhythms in Drosophila Encyclopedia of Neuroscience. 655-661. DOI: 10.1016/B978-008045046-9.01615-6  0.339
2009 Zhang L, Lear BC, Seluzicki A, Allada R. The CRYPTOCHROME photoreceptor gates PDF neuropeptide signaling to set circadian network hierarchy in Drosophila. Current Biology : Cb. 19: 2050-5. PMID 19913424 DOI: 10.1016/J.Cub.2009.10.058  0.782
2009 Kilman VL, Allada R. Genetic analysis of ectopic circadian clock induction in Drosophila. Journal of Biological Rhythms. 24: 368-78. PMID 19755582 DOI: 10.1177/0748730409343761  0.824
2009 Lear BC, Zhang L, Allada R. The neuropeptide PDF acts directly on evening pacemaker neurons to regulate multiple features of circadian behavior. Plos Biology. 7: e1000154. PMID 19621061 DOI: 10.1371/Journal.Pbio.1000154  0.758
2009 Kilman VL, Zhang L, Meissner RA, Burg E, Allada R. Perturbing dynamin reveals potent effects on the Drosophila circadian clock. Plos One. 4: e5235. PMID 19384421 DOI: 10.1371/Journal.Pone.0005235  0.82
2009 Chung BY, Kilman VL, Keath JR, Pitman JL, Allada R. The GABA(A) receptor RDL acts in peptidergic PDF neurons to promote sleep in Drosophila. Current Biology : Cb. 19: 386-90. PMID 19230663 DOI: 10.1016/J.Cub.2009.01.040  0.779
2008 Allada R. How flies time when they're having brunch. Cell Metabolism. 8: 279-80. PMID 18840357 DOI: 10.1016/J.Cmet.2008.09.007  0.342
2008 Meissner RA, Kilman VL, Lin JM, Allada R. TIMELESS is an important mediator of CK2 effects on circadian clock function in vivo. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 28: 9732-40. PMID 18815259 DOI: 10.1523/Jneurosci.0840-08.2008  0.814
2008 Allada R, Siegel JM. Unearthing the phylogenetic roots of sleep. Current Biology : Cb. 18: R670-R679. PMID 18682212 DOI: 10.1016/J.Cub.2008.06.033  0.338
2008 Kahali B, Trott R, Paroush Z, Allada R, Bishop CP, Bidwai AP. Drosophila CK2 phosphorylates Hairy and regulates its activity in vivo. Biochemical and Biophysical Research Communications. 373: 637-42. PMID 18601910 DOI: 10.1016/J.Bbrc.2008.06.084  0.371
2008 Allada R. An emerging link between general anesthesia and sleep. Proceedings of the National Academy of Sciences of the United States of America. 105: 2257-8. PMID 18272494 DOI: 10.1073/Pnas.0711532105  0.338
2008 Smith EM, Lin JM, Meissner RA, Allada R. Dominant-negative CK2alpha induces potent effects on circadian rhythmicity. Plos Genetics. 4: e12. PMID 18208335 DOI: 10.1371/Journal.Pgen.0040012  0.748
2007 Keegan KP, Pradhan S, Wang JP, Allada R. Meta-analysis of Drosophila circadian microarray studies identifies a novel set of rhythmically expressed genes. Plos Computational Biology. 3: e208. PMID 17983263 DOI: 10.1371/Journal.Pcbi.0030208  0.41
2007 Lim C, Chung BY, Pitman JL, McGill JJ, Pradhan S, Lee J, Keegan KP, Choe J, Allada R. Clockwork orange encodes a transcriptional repressor important for circadian-clock amplitude in Drosophila. Current Biology : Cb. 17: 1082-9. PMID 17555964 DOI: 10.1016/J.Cub.2007.05.039  0.834
2007 Allada R. Two oscillators are better than one: a circadian pacemaker escapes from the light. Neuron. 53: 621-3. PMID 17329201 DOI: 10.1016/J.Neuron.2007.02.016  0.475
2007 Sehgal A, Allada R. 19 Circadian Rhythms and Sleep Cold Spring Harbor Monograph Archive. 49: 503-532. DOI: 10.1101/087969819.49.503  0.535
2006 Bose A, Kahali B, Zhang S, Lin JM, Allada R, Karandikar U, Bidwai AP. Drosophila CK2 regulates lateral-inhibition during eye and bristle development. Mechanisms of Development. 123: 649-64. PMID 16930955 DOI: 10.1016/J.Mod.2006.07.003  0.33
2006 Pitman JL, McGill JJ, Keegan KP, Allada R. A dynamic role for the mushroom bodies in promoting sleep in Drosophila. Nature. 441: 753-6. PMID 16760979 DOI: 10.1038/Nature04739  0.726
2005 Lear BC, Lin JM, Keath JR, McGill JJ, Raman IM, Allada R. The ion channel narrow abdomen is critical for neural output of the Drosophila circadian pacemaker. Neuron. 48: 965-76. PMID 16364900 DOI: 10.1016/J.Neuron.2005.10.030  0.485
2005 Allada R, Meissner RA. Casein kinase 2, circadian clocks, and the flight from mutagenic light. Molecular and Cellular Biochemistry. 274: 141-9. PMID 16335534 DOI: 10.1007/S11010-005-2943-1  0.696
2005 Lin JM, Schroeder A, Allada R. In vivo circadian function of casein kinase 2 phosphorylation sites in Drosophila PERIOD. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 25: 11175-83. PMID 16319317 DOI: 10.1523/Jneurosci.2159-05.2005  0.446
2005 Lear BC, Merrill CE, Lin JM, Schroeder A, Zhang L, Allada R. A G protein-coupled receptor, groom-of-PDF, is required for PDF neuron action in circadian behavior. Neuron. 48: 221-7. PMID 16242403 DOI: 10.1016/J.Neuron.2005.09.008  0.743
2003 Rosbash M, Allada R, McDonald M, Peng Y, Zhao J. Circadian rhythms in Drosophila. Novartis Foundation Symposium. 253: 223-32; discussion 5. PMID 14712924 DOI: 10.1002/0470090839.Ch16  0.768
2003 Allada R, Kadener S, Nandakumar N, Rosbash M. A recessive mutant of Drosophila Clock reveals a role in circadian rhythm amplitude. The Embo Journal. 22: 3367-75. PMID 12839998 DOI: 10.1093/Emboj/Cdg318  0.782
2003 Zhao J, Kilman VL, Keegan KP, Peng Y, Emery P, Rosbash M, Allada R. Drosophila clock can generate ectopic circadian clocks. Cell. 113: 755-66. PMID 12809606 DOI: 10.1016/S0092-8674(03)00400-8  0.832
2003 Allada R. Circadian clocks: a tale of two feedback loops. Cell. 112: 284-6. PMID 12581517 DOI: 10.1016/S0092-8674(03)00076-X  0.49
2002 Nash HA, Scott RL, Lear BC, Allada R. An unusual cation channel mediates photic control of locomotion in Drosophila. Current Biology : Cb. 12: 2152-8. PMID 12498692 DOI: 10.1016/S0960-9822(02)01358-1  0.354
2002 Lin JM, Kilman VL, Keegan K, Paddock B, Emery-Le M, Rosbash M, Allada R. A role for casein kinase 2alpha in the Drosophila circadian clock. Nature. 420: 816-20. PMID 12447397 DOI: 10.1038/Nature01235  0.793
2001 Allada R, Emery P, Takahashi JS, Rosbash M. Stopping time: the genetics of fly and mouse circadian clocks. Annual Review of Neuroscience. 24: 1091-119. PMID 11520929 DOI: 10.1146/Annurev.Neuro.24.1.1091  0.651
2000 So WV, Sarov-Blat L, Kotarski CK, McDonald MJ, Allada R, Rosbash M. takeout, a novel Drosophila gene under circadian clock transcriptional regulation. Molecular and Cellular Biology. 20: 6935-44. PMID 10958689 DOI: 10.1128/Mcb.20.18.6935-6944.2000  0.823
1999 Ishida N, Kaneko M, Allada R. Biological clocks. Proceedings of the National Academy of Sciences of the United States of America. 96: 8819-20. PMID 10430850 DOI: 10.1073/Pnas.96.16.8819  0.511
1998 Allada R, White NE, So WV, Hall JC, Rosbash M. A mutant Drosophila homolog of mammalian Clock disrupts circadian rhythms and transcription of period and timeless. Cell. 93: 791-804. PMID 9630223 DOI: 10.1016/S0092-8674(00)81440-3  0.827
1996 Rosbash M, Allada R, Dembinska M, Guo WQ, Le M, Marrus S, Qian Z, Rutila J, Yaglom J, Zeng H. A Drosophila circadian clock. Cold Spring Harbor Symposia On Quantitative Biology. 61: 265-78. PMID 9246455 DOI: 10.1101/Sqb.1996.061.01.029  0.664
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