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Christopher J. Petzold, Ph.D. - Publications

Affiliations: 
2002 Purdue University, West Lafayette, IN, United States 
Area:
Analytical Chemistry
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32/163 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Zargar A, Lal R, Valencia LE, Wang J, Backman TWH, Cruz-Morales P, Kothari A, Werts M, Wong A, Bailey CB, Loubat A, Liu Y, Chen Y, Chang S, Benites VT, ... ... Petzold CJ, et al. Chemoinformatic-guided engineering of polyketide synthases. Journal of the American Chemical Society. PMID 32412752 DOI: 10.1021/Jacs.0C02549  0.307
2019 Chen Y, Guenther JM, Gin JW, Chan LJG, Costello Z, Ogorzalek TL, Tran HM, Blake-Hedges JM, Keasling JD, Adams PD, Garcia Martin H, Hillson NJ, Petzold CJ. An automated 'cells-to-peptides' sample preparation workflow for high-throughput, quantitative proteomic assays of microbes. Journal of Proteome Research. PMID 31436101 DOI: 10.1021/Acs.Jproteome.9B00455  0.31
2019 Dong J, Chen Y, Benites VT, Baidoo EEK, Petzold CJ, Beller HR, Eudes A, Scheller HV, Adams PD, Mukhopadhyay A, Simmons BA, Singer SW. Methyl ketone production by Pseudomonas putida is enhanced by plant-derived amino acids. Biotechnology and Bioengineering. PMID 30982958 DOI: 10.1002/Bit.26995  0.301
2019 Chen Y, Vu J, Thompson MG, Sharpless WA, Chan LJG, Gin JW, Keasling JD, Adams PD, Petzold CJ. A rapid methods development workflow for high-throughput quantitative proteomic applications. Plos One. 14: e0211582. PMID 30763335 DOI: 10.1371/Journal.Pone.0211582  0.303
2016 Zargar K, Saville R, Phelan RM, Tringe SG, Petzold CJ, Keasling JD, Beller HR. In vitro Characterization of Phenylacetate Decarboxylase, a Novel Enzyme Catalyzing Toluene Biosynthesis in an Anaerobic Microbial Community. Scientific Reports. 6: 31362. PMID 27506494 DOI: 10.1038/Srep31362  0.322
2016 Brunk E, George KW, Alonso-Gutierrez J, Thompson M, Baidoo E, Wang G, Petzold CJ, McCloskey D, Monk J, Yang L, O'Brien EJ, Batth TS, Martin HG, Feist A, Adams PD, et al. Characterizing Strain Variation in Engineered E. coli Using a Multi-Omics-Based Workflow. Cell Systems. PMID 27211860 DOI: 10.1016/J.Cels.2016.04.004  0.301
2015 Hagen A, Poust S, Rond T, Fortman JL, Katz L, Petzold CJ, Keasling JD. Engineering a Polyketide Synthase for In Vitro Production of Adipic Acid. Acs Synthetic Biology. PMID 26501439 DOI: 10.1021/Acssynbio.5B00153  0.338
2015 González Fernández-Niño SM, Smith-Moritz AM, Chan LJ, Adams PD, Heazlewood JL, Petzold CJ. Standard flow liquid chromatography for shotgun proteomics in bioenergy research. Frontiers in Bioengineering and Biotechnology. 3: 44. PMID 25883932 DOI: 10.3389/Fbioe.2015.00044  0.307
2015 Poust S, Phelan RM, Deng K, Katz L, Petzold CJ, Keasling JD. Divergent mechanistic routes for the formation of gem-dimethyl groups in the biosynthesis of complex polyketides. Angewandte Chemie (International Ed. in English). 54: 2370-3. PMID 25564997 DOI: 10.1002/Anie.201410124  0.323
2015 Alonso-Gutierrez J, Kim EM, Batth TS, Cho N, Hu Q, Chan LJ, Petzold CJ, Hillson NJ, Adams PD, Keasling JD, Garcia Martin H, Lee TS. Principal component analysis of proteomics (PCAP) as a tool to direct metabolic engineering. Metabolic Engineering. 28: 123-33. PMID 25554074 DOI: 10.1016/J.Ymben.2014.11.011  0.31
2015 Weaver LJ, Sousa MM, Wang G, Baidoo E, Petzold CJ, Keasling JD. A kinetic-based approach to understanding heterologous mevalonate pathway function in E. coli. Biotechnology and Bioengineering. 112: 111-9. PMID 24981116 DOI: 10.1002/Bit.25323  0.326
2014 George KW, Chen A, Jain A, Batth TS, Baidoo EE, Wang G, Adams PD, Petzold CJ, Keasling JD, Lee TS. Correlation analysis of targeted proteins and metabolites to assess and engineer microbial isopentenol production. Biotechnology and Bioengineering. 111: 1648-58. PMID 24615242 DOI: 10.1002/Bit.25226  0.3
2014 Ito J, Herter T, Baidoo EE, Lao J, Vega-Sánchez ME, Michelle Smith-Moritz A, Adams PD, Keasling JD, Usadel B, Petzold CJ, Heazlewood JL. Analysis of plant nucleotide sugars by hydrophilic interaction liquid chromatography and tandem mass spectrometry. Analytical Biochemistry. 448: 14-22. PMID 24299991 DOI: 10.1016/J.Ab.2013.11.026  0.305
2013 Parsons HT, Weinberg CS, Macdonald LJ, Adams PD, Petzold CJ, Strabala TJ, Wagner A, Heazlewood JL. Golgi enrichment and proteomic analysis of developing Pinus radiata xylem by free-flow electrophoresis. Plos One. 8: e84669. PMID 24416096 DOI: 10.1371/Journal.Pone.0084669  0.314
2013 Woo HM, Murray GW, Batth TS, Prasad N, Adams PD, Keasling JD, Petzold CJ, Lee TS. Application of targeted proteomics and biological parts assembly in E. coli to optimize the biosynthesis of an anti-malarial drug precursor, amorpha-4,11-diene Chemical Engineering Science. 103: 21-28. DOI: 10.1016/J.Ces.2013.04.033  0.309
2012 Batth TS, Keasling JD, Petzold CJ. Targeted proteomics for metabolic pathway optimization. Methods in Molecular Biology (Clifton, N.J.). 944: 237-49. PMID 23065621 DOI: 10.1007/978-1-62703-122-6_17  0.317
2012 Singh P, Batth TS, Juminaga D, Dahl RH, Keasling JD, Adams PD, Petzold CJ. Application of targeted proteomics to metabolically engineered Escherichia coli. Proteomics. 12: 1289-99. PMID 22577029 DOI: 10.1002/Pmic.201100482  0.314
2011 Redding-Johanson AM, Batth TS, Chan R, Krupa R, Szmidt HL, Adams PD, Keasling JD, Lee TS, Mukhopadhyay A, Petzold CJ. Targeted proteomics for metabolic pathway optimization: application to terpene production. Metabolic Engineering. 13: 194-203. PMID 21215324 DOI: 10.1016/J.Ymben.2010.12.005  0.318
2007 Mahendra S, Petzold CJ, Baidoo EE, Keasling JD, Alvarez-Cohen L. Identification of the intermediates of in vivo oxidation of 1 ,4-dioxane by monooxygenase-containing bacteria. Environmental Science & Technology. 41: 7330-6. PMID 18044507 DOI: 10.1021/Es0705745  0.383
2007 Shea RC, Petzold CJ, Liu JA, Kenttämaa HI. Experimental investigations of the internal energy of molecules evaporated via laser-induced acoustic desorption into a Fourier transform ion cyclotron resonance mass spectrometer. Analytical Chemistry. 79: 1825-32. PMID 17263513 DOI: 10.1021/Ac061596X  0.806
2006 Shea RC, Petzold CJ, Campbell JL, Li S, Aaserud DJ, Kenttämaa HI. Characterization of laser-induced acoustic desorption coupled with a Fourier transform ion cyclotron resonance mass spectrometer. Analytical Chemistry. 78: 6133-9. PMID 16944895 DOI: 10.1021/Ac0602827  0.676
2005 Liu JA, Petzold CJ, Ramirez-Arizmendi LE, Perez J, Kenttämaa H. Phenyl radicals react with dinucleoside phosphates by addition to purine bases and H-atom abstraction from a sugar moiety. Journal of the American Chemical Society. 127: 12758-9. PMID 16159243 DOI: 10.1021/Ja052766A  0.717
2005 Petzold CJ, Stanton LH, Leary JA. Structural characterization of Lipoarabinomannans from Mycobacterium tuberculosis and Mycobacterium smegmatis by ESI mass spectrometry. Journal of the American Society For Mass Spectrometry. 16: 1109-16. PMID 15923126 DOI: 10.1016/J.Jasms.2005.02.023  0.339
2004 Petzold CJ, Leavell MD, Leary JA. Screening and identification of acidic carbohydrates in bovine colostrum by using ion/molecule reactions and Fourier transform ion cyclotron resonance mass spectrometry: specificity toward phosphorylated complexes. Analytical Chemistry. 76: 203-10. PMID 14697052 DOI: 10.1021/Ac034682V  0.43
2003 Gao H, Petzold CJ, Leavell MD, Leary JA. Investigation of ion/molecule reactions as a quantification method for phosphorylated positional isomers. an FT-ICR approach. Journal of the American Society For Mass Spectrometry. 14: 916-24. PMID 12892915 DOI: 10.1016/S1044-0305(03)00401-X  0.472
2002 Amegayibor FS, Nash JJ, Lee AS, Thoen J, Petzold CJ, Kenttämaa HI. Chemical properties of a para-benzyne. Journal of the American Chemical Society. 124: 12066-7. PMID 12371825 DOI: 10.1021/Ja027633T  0.802
2002 Petzold CJ, Ramírez-Arizmendi LE, Heidbrink JL, Pérez J, Kenttämaa HI. Gas-phase reactions of charged phenyl radicals with neutral biomolecules evaporated by laser-induced acoustic desorption. Journal of the American Society For Mass Spectrometry. 13: 192-4. PMID 11838023 DOI: 10.1016/S1044-0305(01)00344-0  0.731
2002 Petzold CJ, Nelson ED, Lardin HA, Kenttämaa HI. Charge-site effects on the radical reactivity of distonic ions Journal of Physical Chemistry A. 106: 9767-9775. DOI: 10.1021/Jp025521I  0.735
2002 Amegayibor FS, Nash JJ, Lee AS, Thoen J, Petzold CJ, Kenttämaa HI. Chemical properties of a para-benzyne Journal of the American Chemical Society. 124: 12066-12067. DOI: 10.1021/ja027633t  0.8
2001 Price JM, Petzold CJ, Byrd H, Kenttämaa HI. Examination of barriered and barrierless hydrogen atom abstraction reactions by organic radical cations: the cytosine radical cation International Journal of Mass Spectrometry. 212: 455-466. DOI: 10.1016/S1387-3806(01)00514-0  0.71
2000 Pérez J, Ramı́rez-Arizmendi LE, Petzold CJ, Guler LP, Nelson ED, Kenttämaa HI. Laser-induced acoustic desorption/chemical ionization in Fourier-transform ion cyclotron resonance mass spectrometry International Journal of Mass Spectrometry. 198: 173-188. DOI: 10.1016/S1387-3806(00)00181-0  0.712
1999 Pérez J, Petzold CJ, Watkins MA, Vaughn WE, Kenttämaa HI. Laser desorption in transmission geometry inside a Fourier-transform ion cyclotron resonance mass spectrometer. Journal of the American Society For Mass Spectrometry. 10: 1105-10. PMID 10536817 DOI: 10.1016/S1044-0305(99)00084-7  0.777
Low-probability matches (unlikely to be authored by this person)
2020 Jakočiūnas T, Klitgaard AK, Kontou EE, Nielsen JB, Thomsen E, Romero-Suarez D, Blin K, Petzold CJ, Gin JW, Tong Y, Gotfredsen CH, Charusanti P, Frandsen RJN, Weber T, Lee SY, et al. Programmable polyketide biosynthesis platform for production of aromatic compounds in yeast. Synthetic and Systems Biotechnology. 5: 11-18. PMID 32021916 DOI: 10.1016/J.Synbio.2020.01.004  0.3
2018 Denby CM, Li RA, Vu VT, Costello Z, Lin W, Chan LJG, Williams J, Donaldson B, Bamforth CW, Petzold CJ, Scheller HV, Martin HG, Keasling JD. Industrial brewing yeast engineered for the production of primary flavor determinants in hopped beer. Nature Communications. 9: 965. PMID 29559655 DOI: 10.1038/S41467-018-03293-X  0.298
2013 Alonso-Gutierrez J, Chan R, Batth TS, Adams PD, Keasling JD, Petzold CJ, Lee TS. Metabolic engineering of Escherichia coli for limonene and perillyl alcohol production. Metabolic Engineering. 19: 33-41. PMID 23727191 DOI: 10.1016/J.Ymben.2013.05.004  0.297
2009 Wollack JW, Silverman JM, Petzold CJ, Mougous JD, Distefano MD. A minimalist substrate for enzymatic peptide and protein conjugation. Chembiochem : a European Journal of Chemical Biology. 10: 2934-43. PMID 19856367 DOI: 10.1002/Cbic.200900566  0.296
2018 Beller HR, Rodrigues AV, Zargar K, Wu YW, Saini AK, Saville RM, Pereira JH, Adams PD, Tringe SG, Petzold CJ, Keasling JD. Discovery of enzymes for toluene synthesis from anoxic microbial communities. Nature Chemical Biology. PMID 29556105 DOI: 10.1038/S41589-018-0017-4  0.295
2011 Ma SM, Garcia DE, Redding-Johanson AM, Friedland GD, Chan R, Batth TS, Haliburton JR, Chivian D, Keasling JD, Petzold CJ, Lee TS, Chhabra SR. Optimization of a heterologous mevalonate pathway through the use of variant HMG-CoA reductases. Metabolic Engineering. 13: 588-97. PMID 21810477 DOI: 10.1016/J.Ymben.2011.07.001  0.295
2018 Curran SC, Hagen A, Poust S, Chan LJG, Garabedian BM, de Rond T, Baluyot MJ, Vu JT, Lau AK, Yuzawa S, Petzold CJ, Katz L, Keasling JD. Probing the flexibility of an iterative modular polyketide synthase with non-native substrates in vitro. Acs Chemical Biology. PMID 29912551 DOI: 10.1021/Acschembio.8B00422  0.295
2019 Gupta S, Merriman C, Petzold CJ, Ralston C, Fu D. Water molecules mediate zinc mobility in the bacterial zinc diffusion channel ZIPB. The Journal of Biological Chemistry. PMID 31320477 DOI: 10.1074/Jbc.Ra119.009239  0.294
2019 Gupta S, Chen Y, Petzold CJ, DePonte DP, Ralston CY. Development of container free sample exposure for synchrotron X-ray footprinting. Analytical Chemistry. PMID 31790200 DOI: 10.1021/Acs.Analchem.9B04849  0.294
2014 Batth TS, Singh P, Ramakrishnan VR, Sousa MM, Chan LJ, Tran HM, Luning EG, Pan EH, Vuu KM, Keasling JD, Adams PD, Petzold CJ. A targeted proteomics toolkit for high-throughput absolute quantification of Escherichia coli proteins. Metabolic Engineering. 26: 48-56. PMID 25205128 DOI: 10.1016/J.Ymben.2014.08.004  0.294
2016 Gupta S, Feng J, Chan LJ, Petzold CJ, Ralston CY. Synchrotron X-ray footprinting as a method to visualize water in proteins. Journal of Synchrotron Radiation. 23: 1056-69. PMID 27577756 DOI: 10.1107/S1600577516009024  0.292
2019 Luo X, Reiter MA, d'Espaux L, Wong J, Denby CM, Lechner A, Zhang Y, Grzybowski AT, Harth S, Lin W, Lee H, Yu C, Shin J, Deng K, Benites VT, ... ... Petzold CJ, et al. Complete biosynthesis of cannabinoids and their unnatural analogues in yeast. Nature. PMID 30814733 DOI: 10.1038/S41586-019-0978-9  0.292
2020 Park MR, Chen Y, Thompson M, Benites V, Fong B, Petzold C, Baidoo E, Gladden J, Adams P, Keasling J, Simmons BA, Singer SW. The response of Pseudomonas putida to complex aromatic-rich fractions from biomass. Chemsuschem. PMID 32160408 DOI: 10.1002/Cssc.202000268  0.291
2019 Blake-Hedges JM, Pereira JH, Cruz-Morales P, Thompson MG, Barajas JF, Chen J, Krishna RN, Chan LJG, Nimlos D, Alonso-Martinez C, Baidoo EEK, Chen Y, Gin JW, Katz L, Petzold CJ, et al. Structural mechanism of regioselectivity in an unusual bacterial acyl-CoA dehydrogenase. Journal of the American Chemical Society. PMID 31793780 DOI: 10.1021/Jacs.9B09187  0.291
2019 Eiben CB, de Rond T, Bloszies C, Gin J, Chiniquy J, Baidoo EEK, Petzold CJ, Hillson NJ, Fiehn O, Keasling JD. Mevalonate Pathway Promiscuity Enables Noncanonical Terpene Production. Acs Synthetic Biology. PMID 31576747 DOI: 10.1021/Acssynbio.9B00230  0.29
2020 Incha MR, Thompson MG, Blake-Hedges JM, Liu Y, Pearson AN, Schmidt M, Gin JW, Petzold CJ, Deutschbauer AM, Keasling JD. Leveraging host metabolism for bisdemethoxycurcumin production in . Metabolic Engineering Communications. 10: e00119. PMID 32280587 DOI: 10.1016/J.Mec.2019.E00119  0.29
2012 McKee AE, Rutherford BJ, Chivian DC, Baidoo EK, Juminaga D, Kuo D, Benke PI, Dietrich JA, Ma SM, Arkin AP, Petzold CJ, Adams PD, Keasling JD, Chhabra SR. Manipulation of the carbon storage regulator system for metabolite remodeling and biofuel production in Escherichia coli. Microbial Cell Factories. 11: 79. PMID 22694848 DOI: 10.1186/1475-2859-11-79  0.288
2018 George KW, Thompson M, Kim J, Baidoo EEK, Wang G, Benites VT, Petzold CJ, Chan LJG, Yilmaz S, Turhanen P, Adams PD, Keasling JD, Lee TS. Integrated analysis of isopentenyl pyrophosphate (IPP) toxicity in isoprenoid-producing Escherichia coli. Metabolic Engineering. PMID 29530749 DOI: 10.1016/J.Ymben.2018.03.004  0.288
1999 Burden SL, Petzold CJ. Antacids Revisited with Modern Chemical Instruments: GCMS, AAS, and CCT Journal of Chemical Education. 76: 1544. DOI: 10.1021/Ed076P1544  0.286
2012 Juminaga D, Baidoo EE, Redding-Johanson AM, Batth TS, Burd H, Mukhopadhyay A, Petzold CJ, Keasling JD. Modular engineering of L-tyrosine production in Escherichia coli. Applied and Environmental Microbiology. 78: 89-98. PMID 22020510 DOI: 10.1128/Aem.06017-11  0.286
2011 Ito J, Batth TS, Petzold CJ, Redding-Johanson AM, Mukhopadhyay A, Verboom R, Meyer EH, Millar AH, Heazlewood JL. Analysis of the Arabidopsis cytosolic proteome highlights subcellular partitioning of central plant metabolism. Journal of Proteome Research. 10: 1571-82. PMID 21166475 DOI: 10.1021/Pr1009433  0.286
2016 Javidpour P, Deutsch S, Mutalik VK, Hillson NJ, Petzold CJ, Keasling JD, Beller HR. Investigation of Proposed Ladderane Biosynthetic Genes from Anammox Bacteria by Heterologous Expression in E. coli. Plos One. 11: e0151087. PMID 26975050 DOI: 10.1371/Journal.Pone.0151087  0.286
2017 d'Espaux L, Ghosh A, Runguphan W, Wehrs M, Xu F, Konzock O, Dev I, Nhan M, Gin J, Reider Apel A, Petzold CJ, Singh S, Simmons BA, Mukhopadhyay A, García Martín H, et al. Engineering high-level production of fatty alcohols by Saccharomyces cerevisiae from lignocellulosic feedstocks. Metabolic Engineering. PMID 28606738 DOI: 10.1016/J.Ymben.2017.06.004  0.284
2014 Haushalter RW, Kim W, Chavkin TA, The L, Garber ME, Nhan M, Adams PD, Petzold CJ, Katz L, Keasling JD. Production of anteiso-branched fatty acids in Escherichia coli; next generation biofuels with improved cold-flow properties. Metabolic Engineering. 26: 111-118. PMID 25250846 DOI: 10.1016/J.Ymben.2014.09.002  0.284
2018 Goh EB, Chen Y, Petzold CJ, Keasling JD, Beller HR. Improving methyl ketone production in E. coli by heterologous expression of NADH-dependent FabG. Biotechnology and Bioengineering. PMID 29411856 DOI: 10.1002/Bit.26558  0.282
2013 Mann GW, Joshi HJ, Petzold CJ, Heazlewood JL. Proteome coverage of the model plant Arabidopsis thaliana: implications for shotgun proteomic studies. Journal of Proteomics. 79: 195-9. PMID 23268116 DOI: 10.1016/J.Jprot.2012.12.009  0.282
2015 Schwessinger B, Li X, Ellinghaus TL, Chan LJ, Wei T, Joe A, Thomas N, Pruitt R, Adams PD, Chern MS, Petzold CJ, Liu CC, Ronald PC. A second-generation expression system for tyrosine-sulfated proteins and its application in crop protection. Integrative Biology : Quantitative Biosciences From Nano to Macro. PMID 26611838 DOI: 10.1039/C5Ib00232J  0.282
2014 Nowroozi FF, Baidoo EE, Ermakov S, Redding-Johanson AM, Batth TS, Petzold CJ, Keasling JD. Metabolic pathway optimization using ribosome binding site variants and combinatorial gene assembly. Applied Microbiology and Biotechnology. 98: 1567-81. PMID 24257840 DOI: 10.1007/S00253-013-5361-4  0.282
2018 Sommer M, Sutter M, Gupta S, Kirst H, Turmo A, Lechno-Yossef S, Burton RL, Saechao C, Sloan NB, Cheng X, Chan LG, Petzold CJ, Fuentes-Cabrera M, Ralston CY, Kerfeld CA. Heterohexamers Formed by CcmK3 and CcmK4 Increase the Complexity of Beta Carboxysome Shells. Plant Physiology. PMID 30389783 DOI: 10.1104/Pp.18.01190  0.282
2009 Dueber JE, Wu GC, Malmirchegini GR, Moon TS, Petzold CJ, Ullal AV, Prather KLJ, Keasling JD. Synthetic protein scaffolds provide modular control over metabolic flux Nature Biotechnology. 27: 753-759. PMID 19648908 DOI: 10.1038/Nbt.1557  0.281
2019 Thompson MG, Valencia LE, Blake-Hedges JM, Cruz-Morales P, Velasquez AE, Pearson AN, Sermeno LN, Sharpless WA, Benites VT, Chen Y, Baidoo EEK, Petzold CJ, Deutschbauer AM, Keasling JD. Omics-driven identification and elimination of valerolactam catabolism in KT2440 for increased product titer. Metabolic Engineering Communications. 9: e00098. PMID 31720214 DOI: 10.1016/J.Mec.2019.E00098  0.279
2013 Dahl RH, Zhang F, Alonso-Gutierrez J, Baidoo E, Batth TS, Redding-Johanson AM, Petzold CJ, Mukhopadhyay A, Lee TS, Adams PD, Keasling JD. Engineering dynamic pathway regulation using stress-response promoters. Nature Biotechnology. 31: 1039-46. PMID 24142050 DOI: 10.1038/Nbt.2689  0.279
2012 Parsons HT, Christiansen K, Knierim B, Carroll A, Ito J, Batth TS, Smith-Moritz AM, Morrison S, McInerney P, Hadi MZ, Auer M, Mukhopadhyay A, Petzold CJ, Scheller HV, Loqué D, et al. Isolation and proteomic characterization of the Arabidopsis Golgi defines functional and novel components involved in plant cell wall biosynthesis. Plant Physiology. 159: 12-26. PMID 22430844 DOI: 10.1104/Pp.111.193151  0.278
2014 Kirby J, Nishimoto M, Chow RW, Pasumarthi VN, Chan R, Chan LJ, Petzold CJ, Keasling JD. Use of nonionic surfactants for improvement of terpene production in Saccharomyces cerevisiae. Applied and Environmental Microbiology. 80: 6685-93. PMID 25149518 DOI: 10.1128/Aem.02155-14  0.277
2015 Gupta S, Guttman M, Leverenz RL, Zhumadilova K, Pawlowski EG, Petzold CJ, Lee KK, Ralston CY, Kerfeld CA. Local and global structural drivers for the photoactivation of the orange carotenoid protein. Proceedings of the National Academy of Sciences of the United States of America. PMID 26385969 DOI: 10.1073/Pnas.1512240112  0.275
2008 Steen EJ, Chan R, Prasad N, Myers S, Petzold CJ, Redding A, Ouellet M, Keasling JD. Metabolic engineering of Saccharomyces cerevisiae for the production of n-butanol. Microbial Cell Factories. 7: 36. PMID 19055772 DOI: 10.1186/1475-2859-7-36  0.275
2019 Sasaki Y, Eng T, Herbert RA, Trinh J, Chen Y, Rodriguez A, Gladden J, Simmons BA, Petzold CJ, Mukhopadhyay A. Engineering to produce the biogasoline isopentenol from plant biomass hydrolysates. Biotechnology For Biofuels. 12: 41. PMID 30858878 DOI: 10.1186/S13068-019-1381-3  0.274
2018 Eng T, Demling P, Herbert RA, Chen Y, Benites V, Martin J, Lipzen A, Baidoo EEK, Blank LM, Petzold CJ, Mukhopadhyay A. Restoration of biofuel production levels and increased tolerance under ionic liquid stress is enabled by a mutation in the essential Escherichia coli gene cydC. Microbial Cell Factories. 17: 159. PMID 30296937 DOI: 10.1186/S12934-018-1006-8  0.271
2015 George KW, Thompson MG, Kang A, Baidoo E, Wang G, Chan LJ, Adams PD, Petzold CJ, Keasling JD, Lee TS. Metabolic engineering for the high-yield production of isoprenoid-based C₅ alcohols in E. coli. Scientific Reports. 5: 11128. PMID 26052683 DOI: 10.1038/Srep11128  0.27
2017 Mendez-Perez D, Alonso-Gutierrez J, Hu Q, Molinas M, Baidoo EE, Wang G, Chan LJ, Adams PD, Petzold CJ, Keasling JD, Lee TS. Production of jet fuel precursor monoterpenoids from engineered Escherichia coli. Biotechnology and Bioengineering. PMID 28369701 DOI: 10.1002/Bit.26296  0.27
2020 Nies SC, Dinger R, Chen Y, Wordofa GG, Kristensen M, Schneider K, Büchs J, Petzold CJ, Keasling JD, Blank LM, Ebert BE. A systems analysis of NADH dehydrogenase mutants reveals flexibility and limits of VLB120's metabolism. Applied and Environmental Microbiology. PMID 32245760 DOI: 10.1128/Aem.03038-19  0.27
2014 Ghosh A, Nilmeier J, Weaver D, Adams PD, Keasling JD, Mukhopadhyay A, Petzold CJ, Martín HG. A peptide-based method for 13C Metabolic Flux Analysis in microbial communities. Plos Computational Biology. 10: e1003827. PMID 25188426 DOI: 10.1371/Journal.Pcbi.1003827  0.27
2013 Petzold CJ, Schwarz RI. Cells determine cell density using a small protein bound to a unique tissue-specific phospholipid. Peerj. 1: e192. PMID 24244914 DOI: 10.7717/Peerj.192  0.269
2015 Petzold CJ, Chan LJ, Nhan M, Adams PD. Analytics for Metabolic Engineering. Frontiers in Bioengineering and Biotechnology. 3: 135. PMID 26442249 DOI: 10.3389/Fbioe.2015.00135  0.269
2017 Fukushima T, Gupta S, Rad B, Cornejo JA, Petzold CJ, Chan LJG, Mizrahi RA, Ralston CY, Ajo-Franklin CM. The molecular basis for binding of an electron transfer protein to a metal oxide surface. Journal of the American Chemical Society. PMID 28806874 DOI: 10.1021/Jacs.7B06560  0.269
2019 Gupta S, Sutter M, Remesh SG, Dominguez-Martin MA, Bao H, Feng XA, Chan LG, Petzold CJ, Kerfeld CA, Ralston CY. X-ray radiolytic labeling reveals the molecular basis of orange carotenoid protein photoprotection and its interactions with fluorescence recovery protein. The Journal of Biological Chemistry. PMID 30979724 DOI: 10.1074/Jbc.Ra119.007592  0.269
2014 Poust S, Yoon I, Adams PD, Katz L, Petzold CJ, Keasling JD. Understanding the role of histidine in the GHSxG acyltransferase active site motif: evidence for histidine stabilization of the malonyl-enzyme intermediate. Plos One. 9: e109421. PMID 25286165 DOI: 10.1371/Journal.Pone.0109421  0.269
2020 Eng T, Sasaki Y, Herbert RA, Lau A, Trinh J, Chen Y, Mirsiaghi M, Petzold CJ, Mukhopadhyay A. Production of tetra-methylpyrazine using engineered . Metabolic Engineering Communications. 10: e00115. PMID 31890587 DOI: 10.1016/J.Mec.2019.E00115  0.269
2020 Wheatley P, Gupta S, Pandini A, Chen Y, Petzold CJ, Ralston CY, Blair DF, Khan S. Allosteric Priming of E. coli CheY by the Flagellar Motor Protein FliM. Biophysical Journal. PMID 32891187 DOI: 10.1016/J.Bpj.2020.08.009  0.268
2019 Thompson MG, Blake-Hedges JM, Cruz-Morales P, Barajas JF, Curran SC, Eiben CB, Harris NC, Benites VT, Gin JW, Sharpless WA, Twigg FF, Skyrud W, Krishna RN, Henrique Pereira J, Baidoo EEK, ... Petzold CJ, et al. Massively Parallel Fitness Profiling Reveals Multiple Novel Enzymes in Lysine Metabolism. Mbio. 10. PMID 31064836 DOI: 10.1128/Mbio.02577-18  0.267
2019 Kuznetsova V, Dominguez-Martin MA, Bao H, Gupta S, Sutter M, Kloz M, Rebarz M, Přeček M, Chen Y, Petzold CJ, Ralston CY, Kerfeld CA, Polívka T. Comparative ultrafast spectroscopy and structural analysis of OCP1 and OCP2 from Tolypothrix. Biochimica Et Biophysica Acta. Bioenergetics. 148120. PMID 31734194 DOI: 10.1016/J.Bbabio.2019.148120  0.266
2017 Daly P, van Munster JM, Blythe MJ, Ibbett R, Kokolski M, Gaddipati S, Lindquist E, Singan VR, Barry KW, Lipzen A, Ngan CY, Petzold CJ, Chan LJ, Pullan ST, Delmas S, et al. Expression of Aspergillus niger CAZymes is determined by compositional changes in wheat straw generated by hydrothermal or ionic liquid pretreatments. Biotechnology For Biofuels. 10: 35. PMID 28184248 DOI: 10.1186/S13068-017-0700-9  0.266
2017 Alonso-Gutierrez J, Koma D, Hu Q, Yang Y, Chan LJG, Petzold CJ, Adams PD, Vickers CE, Nielsen LK, Keasling JD, Lee TS. Towards industrial production of isoprenoids in Escherichia coli: lessons learned from CRISPR-Cas9 based optimization of a chromosomally integrated mevalonate pathway. Biotechnology and Bioengineering. PMID 29278415 DOI: 10.1002/Bit.26530  0.265
2017 de Rond T, Stow P, Eigl I, Johnson RE, Chan LJG, Goyal G, Baidoo EEK, Hillson NJ, Petzold CJ, Sarpong R, Keasling JD. Oxidative cyclization of prodigiosin by an alkylglycerol monooxygenase-like enzyme. Nature Chemical Biology. PMID 28892091 DOI: 10.1038/Nchembio.2471  0.264
2015 Schwessinger B, Bahar O, Thomas N, Thomas N, Holton N, Nekrasov V, Ruan D, Canlas PE, Daudi A, Petzold CJ, Singan VR, Kuo R, Chovatia M, Daum C, Heazlewood JL, et al. Transgenic expression of the dicotyledonous pattern recognition receptor EFR in rice leads to ligand-dependent activation of defense responses. Plos Pathogens. 11: e1004809. PMID 25821973 DOI: 10.1371/Journal.Ppat.1004809  0.264
2011 Chhabra SR, Joachimiak MP, Petzold CJ, Zane GM, Price MN, Reveco SA, Fok V, Johanson AR, Batth TS, Singer M, Chandonia JM, Joyner D, Hazen TC, Arkin AP, Wall JD, et al. Towards a rigorous network of protein-protein interactions of the model sulfate reducer Desulfovibrio vulgaris Hildenborough. Plos One. 6: e21470. PMID 21738675 DOI: 10.1371/Journal.Pone.0021470  0.262
2019 Parsons HT, Stevens TJ, McFarlane HE, Vidal-Melgosa S, Griss J, Lawrence N, Butler R, Sousa MML, Salemi M, Willats WGT, Petzold CJ, Heazlewood JL, Lilley KS. Separating Golgi proteins from cis to trans reveals underlying properties of cisternal localization. The Plant Cell. PMID 31266899 DOI: 10.1105/Tpc.19.00081  0.261
2007 Kumar P, Schelle MW, Jain M, Lin FL, Petzold CJ, Leavell MD, Leary JA, Cox JS, Bertozzi CR. PapA1 and PapA2 are acyltransferases essential for the biosynthesis of the Mycobacterium tuberculosis virulence factor sulfolipid-1. Proceedings of the National Academy of Sciences of the United States of America. 104: 11221-6. PMID 17592143 DOI: 10.1073/Pnas.0611649104  0.26
2011 Rautengarten C, Ebert B, Herter T, Petzold CJ, Ishii T, Mukhopadhyay A, Usadel B, Scheller HV. The interconversion of UDP-arabinopyranose and UDP-arabinofuranose is indispensable for plant development in Arabidopsis. The Plant Cell. 23: 1373-90. PMID 21478444 DOI: 10.1105/Tpc.111.083931  0.258
2020 Pang B, Chen Y, Gan F, Yan C, Jin L, Gin JW, Petzold CJ, Keasling JD. Investigation of Indigoidine Synthetase Reveals Conserved Active Site Base Residue of Nonribosomal Peptide Synthetase Oxidases. Journal of the American Chemical Society. PMID 32510939 DOI: 10.1021/Jacs.0C04328  0.257
2017 Hooper CM, Stevens TJ, Saukkonen A, Castleden IR, Singh P, Mann GW, Fabre B, Ito J, Deery M, Lilley KS, Petzold CJ, Millar AH, Heazlewood JL, Parsons HT. Multiple Marker Abundance Profiling: combining selected reaction monitoring and data-dependent acquisition for rapid estimation of organelle abundance in subcellular samples. The Plant Journal : For Cell and Molecular Biology. PMID 29024340 DOI: 10.1111/Tpj.13743  0.257
2014 Winger AM, Heazlewood JL, Chan LJG, Petzold CJ, Permaul K, Singh S. Secretome analysis of the thermophilic xylanase hyper-producer Thermomyces lanuginosus SSBP cultivated on corn cobs Journal of Industrial Microbiology and Biotechnology. 41: 1687-1696. PMID 25223615 DOI: 10.1007/S10295-014-1509-1  0.256
2004 Mougous JD, Petzold CJ, Senaratne RH, Lee DH, Akey DL, Lin FL, Munchel SE, Pratt MR, Riley LW, Leary JA, Berger JM, Bertozzi CR. Identification, function and structure of the mycobacterial sulfotransferase that initiates sulfolipid-1 biosynthesis. Nature Structural & Molecular Biology. 11: 721-9. PMID 15258569 DOI: 10.1038/Nsmb802  0.256
2019 Opgenorth P, Costello Z, Okada T, Goyal G, Chen Y, Gin J, Benites VT, Raad M, Northen TR, Deng K, Deutsch S, Baidoo EEK, Petzold CJ, Hillson NJ, Garcia Martin H, et al. Lessons from two Design-Build-Test-Learn cycles of dodecanol production in Escherichia coli aided by machine learning. Acs Synthetic Biology. PMID 31072100 DOI: 10.1021/Acssynbio.9B00020  0.256
2012 Groff D, Benke PI, Batth TS, Bokinsky G, Petzold CJ, Adams PD, Keasling JD. Supplementation of intracellular XylR leads to coutilization of hemicellulose sugars. Applied and Environmental Microbiology. 78: 2221-9. PMID 22286982 DOI: 10.1128/Aem.06761-11  0.256
2006 Mougous JD, Senaratne RH, Petzold CJ, Jain M, Lee DH, Schelle MW, Leavell MD, Cox JS, Leary JA, Riley LW, Bertozzi CR. A sulfated metabolite produced by stf3 negatively regulates the virulence of Mycobacterium tuberculosis. Proceedings of the National Academy of Sciences of the United States of America. 103: 4258-63. PMID 16537518 DOI: 10.1073/Pnas.0510861103  0.255
2017 Yuzawa S, Bailey CB, Fujii T, Jocic R, Barajas JF, Benites VT, Baidoo EEK, Chen Y, Petzold CJ, Katz L, Keasling JD. Heterologous Gene Expression of N-terminally truncated variants of LipPks1 Suggests a Functionally Critical Structural Motif in the N-terminus of Modular Polyketide Synthase. Acs Chemical Biology. PMID 29028314 DOI: 10.1021/Acschembio.7B00714  0.253
2018 Barajas JF, Zargar A, Pang B, Benites VT, Gin J, Baidoo EEK, Petzold CJ, Hillson NJ, Keasling JD. Biochemical Characterization of β-Amino Acid Incorporation in Fluvirucin B2 Biosynthesis. Chembiochem : a European Journal of Chemical Biology. PMID 29603548 DOI: 10.1002/Cbic.201800169  0.252
2023 Huang J, Quest A, Cruz-Morales P, Deng K, Pereira JH, Van Cura D, Kakumanu R, Baidoo EEK, Dan Q, Chen Y, Petzold CJ, Northen TR, Adams PD, Clark DS, Balskus EP, et al. Complete integration of carbene-transfer chemistry into biosynthesis. Nature. PMID 37138074 DOI: 10.1038/s41586-023-06027-2  0.252
2014 Frederix M, Hütter K, Leu J, Batth TS, Turner WJ, Rüegg TL, Blanch HW, Simmons BA, Adams PD, Keasling JD, Thelen MP, Dunlop MJ, Petzold CJ, Mukhopadhyay A. Development of a native Escherichia coli induction system for ionic liquid tolerance. Plos One. 9: e101115. PMID 24983352 DOI: 10.1371/Journal.Pone.0101115  0.251
2012 McClendon SD, Batth T, Petzold CJ, Adams PD, Simmons BA, Singer SW. Thermoascus aurantiacus is a promising source of enzymes for biomass deconstruction under thermophilic conditions. Biotechnology For Biofuels. 5: 54. PMID 22839529 DOI: 10.1186/1754-6834-5-54  0.25
2019 Luu DD, Joe A, Chen Y, Parys K, Bahar O, Pruitt R, Chan LJG, Petzold CJ, Long K, Adamchak C, Stewart V, Belkhadir Y, Ronald PC. Biosynthesis and secretion of the microbial sulfated peptide RaxX and binding to the rice XA21 immune receptor. Proceedings of the National Academy of Sciences of the United States of America. PMID 30948631 DOI: 10.1073/Pnas.1818275116  0.249
2020 van Munster JM, Daly P, Blythe MJ, Ibbett R, Kokolski M, Gaddipati S, Lindquist E, Singan VR, Barry KW, Lipzen A, Ngan CY, Petzold CJ, Chan LJG, Arvas M, Raulo R, et al. Succession of physiological stages hallmarks the transcriptomic response of the fungus to lignocellulose. Biotechnology For Biofuels. 13: 69. PMID 32313551 DOI: 10.1186/S13068-020-01702-2  0.249
2015 Pruitt RN, Schwessinger B, Joe A, Thomas N, Liu F, Albert M, Robinson MR, Chan LJ, Luu DD, Chen H, Bahar O, Daudi A, De Vleesschauwer D, Caddell D, Zhang W, ... ... Petzold CJ, et al. The rice immune receptor XA21 recognizes a tyrosine-sulfated protein from a Gram-negative bacterium. Science Advances. 1: e1500245. PMID 26601222 DOI: 10.1126/Sciadv.1500245  0.248
2012 Park JI, Steen EJ, Burd H, Evans SS, Redding-Johnson AM, Batth T, Benke PI, D'haeseleer P, Sun N, Sale KL, Keasling JD, Lee TS, Petzold CJ, Mukhopadhyay A, Singer SW, et al. A thermophilic ionic liquid-tolerant cellulase cocktail for the production of cellulosic biofuels. Plos One. 7: e37010. PMID 22649505 DOI: 10.1371/Journal.Pone.0037010  0.248
2015 Ebert B, Rautengarten C, Guo X, Xiong G, Stonebloom S, Smith-Moritz AM, Herter T, Chan LJ, Adams PD, Petzold CJ, Pauly M, Willats WG, Heazlewood JL, Scheller HV. Identification and Characterization of a Golgi-Localized UDP-Xylose Transporter Family from Arabidopsis. The Plant Cell. 27: 1218-27. PMID 25804536 DOI: 10.1105/Tpc.114.133827  0.246
2020 Chen Y, Banerjee D, Mukhopadhyay A, Petzold CJ. Systems and synthetic biology tools for advanced bioproduction hosts. Current Opinion in Biotechnology. 64: 101-109. PMID 31927061 DOI: 10.1016/J.Copbio.2019.12.007  0.246
2014 Gupta S, Celestre R, Petzold CJ, Chance MR, Ralston C. Development of a microsecond X-ray protein footprinting facility at the Advanced Light Source. Journal of Synchrotron Radiation. 21: 690-9. PMID 24971962 DOI: 10.1107/S1600577514007000  0.246
2007 Jain M, Petzold CJ, Schelle MW, Leavell MD, Mougous JD, Bertozzi CR, Leary JA, Cox JS. Lipidomics reveals control of Mycobacterium tuberculosis virulence lipids via metabolic coupling. Proceedings of the National Academy of Sciences of the United States of America. 104: 5133-8. PMID 17360366 DOI: 10.1073/Pnas.0610634104  0.242
2014 Rennie EA, Ebert B, Miles GP, Cahoon RE, Christiansen KM, Stonebloom S, Khatab H, Twell D, Petzold CJ, Adams PD, Dupree P, Heazlewood JL, Cahoon EB, Scheller HV. Identification of a sphingolipid α-glucuronosyltransferase that is essential for pollen function in Arabidopsis. The Plant Cell. 26: 3314-25. PMID 25122154 DOI: 10.1105/Tpc.114.129171  0.242
2016 de Michele R, McFarlane HE, Parsons HT, Meents MJ, Lao J, González Fernández-Niño SM, Petzold CJ, Frommer WB, Samuels AL, Heazlewood JL. Free-Flow Electrophoresis of Plasma Membrane Vesicles Enriched by Two-Phase Partitioning Enhances the Quality of the Proteome from Arabidopsis Seedlings. Journal of Proteome Research. PMID 26781341 DOI: 10.1021/Acs.Jproteome.5B00876  0.241
2017 Morrell W, Birkel G, Forrer M, Lopez T, Backman T, Dussault M, Petzold CJ, Baidoo EEK, Costello Z, Ando D, Alonso Gutierrez J, George K, Mukhopadhyay A, Vaino I, Keasling JD, et al. The Experiment Data Depot: a web-based software tool for biological experimental data storage, sharing, and visualization. Acs Synthetic Biology. PMID 28826210 DOI: 10.1021/Acssynbio.7B00204  0.241
2008 Shui W, Sheu L, Liu J, Smart B, Petzold CJ, Hsieh TY, Pitcher A, Keasling JD, Bertozzi CR. Membrane proteomics of phagosomes suggests a connection to autophagy. Proceedings of the National Academy of Sciences of the United States of America. 105: 16952-7. PMID 18971338 DOI: 10.1073/Pnas.0809218105  0.24
2017 Venturelli OS, Tei M, Bauer S, Chan LJG, Petzold CJ, Arkin AP. Programming mRNA decay to modulate synthetic circuit resource allocation. Nature Communications. 8: 15128. PMID 28443619 DOI: 10.1038/Ncomms15128  0.236
2012 Zhang F, Ouellet M, Batth TS, Adams PD, Petzold CJ, Mukhopadhyay A, Keasling JD. Enhancing fatty acid production by the expression of the regulatory transcription factor FadR. Metabolic Engineering. 14: 653-60. PMID 23026122 DOI: 10.1016/J.Ymben.2012.08.009  0.236
2018 Budin I, de Rond T, Chen Y, Chan LJG, Petzold CJ, Keasling JD. Viscous control of cellular respiration by membrane lipid composition. Science (New York, N.Y.). PMID 30361388 DOI: 10.1126/Science.Aat7925  0.235
2014 Hagen A, Poust S, de Rond T, Yuzawa S, Katz L, Adams PD, Petzold CJ, Keasling JD. In vitro analysis of carboxyacyl substrate tolerance in the loading and first extension modules of borrelidin polyketide synthase. Biochemistry. 53: 5975-7. PMID 25188840 DOI: 10.1021/Bi500951C  0.233
2015 Leverenz RL, Sutter M, Wilson A, Gupta S, Thurotte A, Bourcier de Carbon C, Petzold CJ, Ralston C, Perreau F, Kirilovsky D, Kerfeld CA. PHOTOSYNTHESIS. A 12 Å carotenoid translocation in a photoswitch associated with cyanobacterial photoprotection. Science (New York, N.Y.). 348: 1463-6. PMID 26113721 DOI: 10.1126/Science.Aaa7234  0.229
2023 Bilbao A, Munoz N, Kim J, Orton DJ, Gao Y, Poorey K, Pomraning KR, Weitz K, Burnet M, Nicora CD, Wilton R, Deng S, Dai Z, Oksen E, Gee A, ... ... Petzold CJ, et al. PeakDecoder enables machine learning-based metabolite annotation and accurate profiling in multidimensional mass spectrometry measurements. Nature Communications. 14: 2461. PMID 37117207 DOI: 10.1038/s41467-023-37031-9  0.226
2011 Shui W, Petzold CJ, Redding A, Liu J, Pitcher A, Sheu L, Hsieh TY, Keasling JD, Bertozzi CR. Organelle membrane proteomics reveals differential influence of mycobacterial lipoglycans on macrophage phagosome maturation and autophagosome accumulation. Journal of Proteome Research. 10: 339-48. PMID 21105745 DOI: 10.1021/Pr100688H  0.218
2018 Liu CL, Tian T, Alonso-Gutierrez J, Garabedian B, Wang S, Baidoo EEK, Benites V, Chen Y, Petzold CJ, Adams PD, Keasling JD, Tan T, Lee TS. Renewable production of high density jet fuel precursor sesquiterpenes from . Biotechnology For Biofuels. 11: 285. PMID 30377444 DOI: 10.1186/S13068-018-1272-Z  0.213
2021 Ha NS, de Raad M, Han Z, Golini A, Petzold CJ, Northen TR. Faster, better, and cheaper: harnessing microfluidics and mass spectrometry for biotechnology. Rsc Chemical Biology. 2: 1331-1351. PMID 34704041 DOI: 10.1039/d1cb00112d  0.212
2012 Park JI, Steen EJ, Burd H, Evans SS, Redding-Johnson AM, Batth T, Benke PI, D'haeseleer P, Sun N, Sale KL, Keasling JD, Lee TS, Petzold CJ, Mukhopadhyay A, Singer SW, et al. A pie chart showing the percent relative abundance of each taxon in the McCel-adapted thermophilic bacterial consortia. Plos One. DOI: 10.1371/Journal.Pone.0037010.G002  0.212
2018 Morton SA, Gupta S, Petzold CJ, Ralston C. Recent Advances in X-Ray Hydroxl Radical Footprinting at the Advanced Light Source Synchrotron. Protein and Peptide Letters. PMID 30484401 DOI: 10.2174/0929866526666181128125725  0.211
2014 Chen X, Zuo S, Schwessinger B, Chern M, Canlas PE, Ruan D, Zhou X, Wang J, Daudi A, Petzold CJ, Heazlewood JL, Ronald PC. An XA21-associated kinase (OsSERK2) regulates immunity mediated by the XA21 and XA3 immune receptors. Molecular Plant. 7: 874-92. PMID 24482436 DOI: 10.1093/Mp/Ssu003  0.209
2018 Barajas JF, Zargar A, Pang B, Benites VT, Gin J, Baidoo EEK, Petzold CJ, Hillson NJ, Keasling JD. Cover Feature: Biochemical Characterization of β-Amino Acid Incorporation in Fluvirucin B2 Biosynthesis (ChemBioChem 13/2018) Chembiochem. 19: 1351-1351. DOI: 10.1002/Cbic.201800299  0.209
2018 Gupta S, Dominguez-Martin MA, Bao H, Sutter M, Feng J, Chan LG, Petzold CJ, Kerfeld CA, Ralston CY. A Glimpse into the Sequence of Structural Changes in the Orange Carotenoid Protein Which Switch on the Photoprotection Mechanism in Cyanobacteria Biophysical Journal. 114: 386a. DOI: 10.1016/J.Bpj.2017.11.2136  0.208
2017 Kolinko S, Wu YW, Tachea F, Denzel E, Hiras J, Gabriel R, Bäcker N, Chan LJG, Eichorst SA, Frey D, Chen Q, Azadi P, Adams PD, Pray TR, Tanjore D, ... Petzold CJ, et al. A bacterial pioneer produces cellulase complexes that persist through community succession. Nature Microbiology. PMID 29109478 DOI: 10.1038/S41564-017-0052-Z  0.207
2020 Luo X, Reiter MA, d'Espaux L, Wong J, Denby CM, Lechner A, Zhang Y, Grzybowski AT, Harth S, Lin W, Lee H, Yu C, Shin J, Deng K, Benites VT, ... ... Petzold CJ, et al. Author Correction: Complete biosynthesis of cannabinoids and their unnatural analogues in yeast. Nature. 580: E2. PMID 32269333 DOI: 10.1038/S41586-020-2109-Z  0.205
2021 Ing N, Deng K, Chen Y, Aulitto M, Gin JW, Pham TLM, Petzold CJ, Singer SW, Bowen B, Sale KL, Simmons BA, Singh AK, Adams PD, Northen TR. A multiplexed nanostructure-initiator mass spectrometry (NIMS) assay for simultaneously detecting glycosyl hydrolase and lignin modifying enzyme activities. Scientific Reports. 11: 11803. PMID 34083602 DOI: 10.1038/s41598-021-91181-8  0.169
2016 Chubukov V, Mukhopadhyay A, Petzold CJ, Keasling JD, Martín HG. Synthetic and systems biology for microbial production of commodity chemicals. Npj Systems Biology and Applications. 2: 16009. PMID 28725470 DOI: 10.1038/npjsba.2016.9  0.167
2023 Chen Y, Gin JW, Wang Y, de Raad M, Tan S, Hillson NJ, Northen TR, Adams PD, Petzold CJ. Alkaline-SDS cell lysis of microbes with acetone protein precipitation for proteomic sample preparation in 96-well plate format. Plos One. 18: e0288102. PMID 37418444 DOI: 10.1371/journal.pone.0288102  0.154
2022 Zhang J, Hansen LG, Gudich O, Viehrig K, Lassen LMM, Schrübbers L, Adhikari KB, Rubaszka P, Carrasquer-Alvarez E, Chen L, D'Ambrosio V, Lehka B, Haidar AK, Nallapareddy S, Giannakou K, ... ... Petzold CJ, et al. A microbial supply chain for production of the anti-cancer drug vinblastine. Nature. PMID 36045295 DOI: 10.1038/s41586-022-05157-3  0.15
2020 Banerjee D, Eng T, Lau AK, Sasaki Y, Wang B, Chen Y, Prahl JP, Singan VR, Herbert RA, Liu Y, Tanjore D, Petzold CJ, Keasling JD, Mukhopadhyay A. Genome-scale metabolic rewiring improves titers rates and yields of the non-native product indigoidine at scale. Nature Communications. 11: 5385. PMID 33097726 DOI: 10.1038/s41467-020-19171-4  0.15
2021 Kristensen LG, Holton JM, Rad B, Chen Y, Petzold CJ, Gupta S, Ralston CY. Hydroxyl radical mediated damage of proteins in low oxygen solution investigated using X-ray footprinting mass spectrometry. Journal of Synchrotron Radiation. 28: 1333-1342. PMID 34475282 DOI: 10.1107/S1600577521004744  0.143
2023 Englund E, Schmidt M, Nava AA, Lechner A, Deng K, Jocic R, Lin Y, Roberts J, Benites VT, Kakumanu R, Gin JW, Chen Y, Liu Y, Petzold CJ, Baidoo EEK, et al. Expanding Extender Substrate Selection for Unnatural Polyketide Biosynthesis by Acyltransferase Domain Exchange within a Modular Polyketide Synthase. Journal of the American Chemical Society. PMID 37057992 DOI: 10.1021/jacs.2c11027  0.142
2023 Luckie BA, Kashyap M, Pearson AN, Chen Y, Liu Y, Valencia LE, Carrillo Romero A, Hudson GA, Tao XB, Wu B, Petzold CJ, Keasling JD. Development of Corynebacterium glutamicum as a monoterpene production platform. Metabolic Engineering. 81: 110-122. PMID 38056688 DOI: 10.1016/j.ymben.2023.11.009  0.14
2022 Rosi M, Russell B, Kristensen LG, Farquhar ER, Jain R, Abel D, Sullivan M, Costello SM, Dominguez-Martin MA, Chen Y, Marqusee S, Petzold CJ, Kerfeld CA, DePonte DP, Farahmand F, et al. An automated liquid jet for fluorescence dosimetry and microsecond radiolytic labeling of proteins. Communications Biology. 5: 866. PMID 36008591 DOI: 10.1038/s42003-022-03775-1  0.138
2023 Eng T, Banerjee D, Menasalvas J, Chen Y, Gin J, Choudhary H, Baidoo E, Chen JH, Ekman A, Kakumanu R, Diercks YL, Codik A, Larabell C, Gladden J, Simmons BA, ... ... Petzold CJ, et al. Maximizing microbial bioproduction from sustainable carbon sources using iterative systems engineering. Cell Reports. 42: 113087. PMID 37665664 DOI: 10.1016/j.celrep.2023.113087  0.133
2023 Shrestha S, Awasthi D, Chen Y, Gin J, Petzold CJ, Adams PD, Simmons BA, Singer SW. Simultaneous carbon catabolite repression governs sugar and aromatic co-utilization in M2. Applied and Environmental Microbiology. e0085223. PMID 37724856 DOI: 10.1128/aem.00852-23  0.128
2022 Awasthi D, Tang YH, Amer B, Baidoo EEK, Gin J, Chen Y, Petzold CJ, Kalyuzhnaya M, Singer SW. Adaptive evolution of Methylotuvimicrobium alcaliphilum to grow in the presence of rhamnolipids improves fatty acid and rhamnolipid production from CH4. Journal of Industrial Microbiology & Biotechnology. PMID 35134957 DOI: 10.1093/jimb/kuac002  0.126
2024 Banerjee D, Yunus IS, Wang X, Kim J, Srinivasan A, Menchavez R, Chen Y, Gin JW, Petzold CJ, Martin HG, Magnuson JK, Adams PD, Simmons BA, Mukhopadhyay A, Kim J, et al. Genome-scale and pathway engineering for the sustainable aviation fuel precursor isoprenol production in Pseudomonas putida. Metabolic Engineering. PMID 38369052 DOI: 10.1016/j.ymben.2024.02.004  0.125
2023 Sword TT, Barker JW, Spradley M, Chen Y, Petzold CJ, Bailey CB. Expression of blue pigment synthetase a from Streptomyces lavenduale reveals insights on the effects of refactoring biosynthetic megasynthases for heterologous expression in Escherichia coli. Protein Expression and Purification. 210: 106317. PMID 37286066 DOI: 10.1016/j.pep.2023.106317  0.122
2022 Chen Y, Kaplan Lease N, Gin JW, Ogorzalek TL, Adams PD, Hillson NJ, Petzold CJ. Modular automated bottom-up proteomic sample preparation for high-throughput applications. Plos One. 17: e0264467. PMID 35213656 DOI: 10.1371/journal.pone.0264467  0.118
2021 Liu H, Shiver AL, Price MN, Carlson HK, Trotter VV, Chen Y, Escalante V, Ray J, Hern KE, Petzold CJ, Turnbaugh PJ, Huang KC, Arkin AP, Deutschbauer AM. Functional genetics of human gut commensal Bacteroides thetaiotaomicron reveals metabolic requirements for growth across environments. Cell Reports. 34: 108789. PMID 33657378 DOI: 10.1016/j.celrep.2021.108789  0.118
2023 Schmidt M, Lee N, Zhan C, Roberts JB, Nava AA, Keiser LS, Vilchez AA, Chen Y, Petzold CJ, Haushalter RW, Blank LM, Keasling JD. Maximizing Heterologous Expression of Engineered Type I Polyketide Synthases: Investigating Codon Optimization Strategies. Acs Synthetic Biology. PMID 37851920 DOI: 10.1021/acssynbio.3c00367  0.118
2017 Chubukov V, Desmarais JJ, Wang G, Chan LJG, Baidoo EE, Petzold CJ, Keasling JD, Mukhopadhyay A. Engineering glucose metabolism of Escherichia coli under nitrogen starvation. Npj Systems Biology and Applications. 3: 16035. PMID 28725483 DOI: 10.1038/npjsba.2016.35  0.118
2024 Raza S, Sarkar D, Chan LJG, Mae J, Sutter M, Petzold CJ, Kerfeld CA, Ralston CY, Gupta S, Vermaas JV. Comparative Pore Structure and Dynamics for Bacterial Microcompartment Shell Protein Assemblies in Sheets or Shells. Biorxiv : the Preprint Server For Biology. PMID 38559214 DOI: 10.1101/2024.03.12.584231  0.116
2019 Parsons HT, Stevens TJ, McFarlane HE, Vidal-Melgosa S, Griss J, Lawrence N, Butler R, Sousa MML, Salemi M, Willats WGT, Petzold CJ, Heazlewood JL, Lilley KS. Separating Golgi Proteins from Cis to Trans Reveals Underlying Properties of Cisternal Localization. The Plant Cell. 31: 2010-2034. PMID 33831204 DOI: 10.1105/tpc.19.00081  0.115
2008 Acehan D, Petzold C, Gumper I, Sabatini DD, Müller EJ, Cowin P, Stokes DL. Plakoglobin is required for effective intermediate filament anchorage to desmosomes. The Journal of Investigative Dermatology. 128: 2665-75. PMID 18496566 DOI: 10.1038/Jid.2008.141  0.092
2020 Dominguez-Martin MA, Hammel M, Gupta S, Lechno-Yossef S, Sutter M, Rosenberg DJ, Chen Y, Petzold CJ, Ralston CY, Polívka T, Kerfeld CA. Structural analysis of a new carotenoid-binding protein: the C-terminal domain homolog of the OCP. Scientific Reports. 10: 15564. PMID 32968135 DOI: 10.1038/s41598-020-72383-y  0.086
2024 Maini Rekdal V, van der Luijt CRB, Chen Y, Kakumanu R, Baidoo EEK, Petzold CJ, Cruz-Morales P, Keasling JD. Edible mycelium bioengineered for enhanced nutritional value and sensory appeal using a modular synthetic biology toolkit. Nature Communications. 15: 2099. PMID 38485948 DOI: 10.1038/s41467-024-46314-8  0.083
2022 Park MR, Gauttam R, Fong B, Chen Y, Lim HG, Feist AM, Mukhopadhay A, Petzold CJ, Simmons BA, Singer SW. Revealing Oxidative Pentose Metabolism in New Pseudomonas putida Isolates. Environmental Microbiology. PMID 36465038 DOI: 10.1111/1462-2920.16296  0.077
2020 Lawson C, Martí JM, Radivojevic T, Jonnalagadda SVR, Gentz R, Hillson NJ, Peisert S, Kim J, Simmons BA, Petzold CJ, Singer SW, Mukhopadhyay A, Tanjore D, Dunn J, Martin HG. Machine learning for metabolic engineering: A review. Metabolic Engineering. PMID 33221420 DOI: 10.1016/j.ymben.2020.10.005  0.075
2021 Plahar HA, Rich TN, Lane SD, Morrell WC, Springthorpe L, Nnadi O, Aravina E, Dai T, Fero MJ, Hillson NJ, Petzold CJ. BioParts-A Biological Parts Search Portal and Updates to the ICE Parts Registry Software Platform. Acs Synthetic Biology. PMID 34449214 DOI: 10.1021/acssynbio.1c00263  0.067
2023 Antao NV, Lam C, Davydov A, Riggi M, Sall J, Petzold C, Liang FX, Iwasa JH, Ekiert DC, Bhabha G. 3D reconstructions of parasite development and the intracellular niche of the microsporidian pathogen Encephalitozoon intestinalis. Nature Communications. 14: 7662. PMID 37996434 DOI: 10.1038/s41467-023-43215-0  0.053
2022 Goff JL, Chen Y, Thorgersen MP, Hoang LT, Poole FL, Szink EG, Siuzdak G, Petzold CJ, Adams MWW. Mixed heavy metal stress induces global iron starvation response. The Isme Journal. PMID 36572723 DOI: 10.1038/s41396-022-01351-3  0.049
2023 Antao NV, Lam C, Davydov A, Riggi M, Sall J, Petzold C, Liang FX, Iwasa J, Ekiert DC, Bhabha G. 3D reconstructions of parasite development and the intracellular niche of the microsporidian pathogen . Biorxiv : the Preprint Server For Biology. PMID 37425741 DOI: 10.1101/2023.07.02.547383  0.047
2015 Schwessinger B, Bahar O, Thomas N, Holton N, Nekrasov V, Ruan D, Canlas PE, Daudi A, Petzold CJ, Singan VR, Kuo R, Chovatia M, Daum C, Heazlewood JL, Zipfel C, et al. Correction: Transgenic expression of the dicotyledonous pattern recognition receptor EFR in rice leads to ligand-dependent activation of defense responses. Plos Pathogens. 11: e1004872. PMID 25906371 DOI: 10.1371/journal.ppat.1004872  0.023
2021 Kim YM, Petzold CJ, Kerkhoven EJ, Baker SE. Editorial: Multi-Omics Technologies for Optimizing Synthetic Biomanufacturing. Frontiers in Bioengineering and Biotechnology. 9: 818010. PMID 34976996 DOI: 10.3389/fbioe.2021.818010  0.023
2015 Leverenz RL, Sutter M, Wilson A, Gupta S, Thurotte A, De Carbon CB, Petzold CJ, Ralston C, Perreau F, Kirilovsky D, Kerfeld CA. A 12 Å carotenoid translocation in a photoswitch associated with cyanobacterial photoprotection Science. 348: 1463-1466. DOI: 10.1126/science.aaa7234  0.015
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