Kimberly R. Thompson, PhD - Publications

Stanford University, Palo Alto, CA 

79 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any innacuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Ye L, Allen WE, Thompson KR, Tian Q, Hsueh B, Ramakrishnan C, Wang AC, Jennings JH, Adhikari A, Halpern CH, Witten IB, Barth AL, Luo L, McNab JA, Deisseroth K. Wiring and Molecular Features of Prefrontal Ensembles Representing Distinct Experiences. Cell. PMID 27238022 DOI: 10.1016/j.cell.2016.05.010  1
2016 Oliver ECJ, Thompson KR. Predictability of the Madden–Julian Oscillation index: seasonality and dependence on MJO phase Climate Dynamics. 46: 159-176. DOI: 10.1007/s00382-015-2576-3  0.4
2015 Bernier NB, Thompson KR. Deterministic and ensemble storm surge prediction for Atlantic Canada with lead times of hours to ten days Ocean Modelling. 86: 114-127. DOI: 10.1016/j.ocemod.2014.12.002  0.4
2015 Lin H, Thompson KR, Huang J, Véronneau M. Tilt of mean sea level along the Pacific coasts of North America and Japan Journal of Geophysical Research: Oceans. 120: 6815-6828. DOI: 10.1002/2015JC010920  0.4
2015 Higginson S, Thompson KR, Woodworth PL, Hughes CW. The tilt of mean sea level along the east coast of North America Geophysical Research Letters. 42: 1471-1479. DOI: 10.1002/2015GL063186  0.4
2014 Lin H, Thompson KR, Hu J. A frequency-dependent description of propagating sea level signals in the Kuroshio extension region Journal of Physical Oceanography. 44: 1614-1635. DOI: 10.1175/JPO-D-13-0185.1  0.4
2014 He Z, Thompson KR, Ritchie H, Lu Y, Dupont F. Reducing drift and bias of a global ocean model by frequency-dependent nudging Atmosphere - Ocean. 52: 242-255. DOI: 10.1080/07055900.2014.922240  0.4
2014 Lagman KB, Fennel K, Thompson KR, Bianucci L. Assessing the utility of frequency dependent nudging for reducing biases in biogeochemical models Ocean Modelling. 81: 25-35. DOI: 10.1016/j.ocemod.2014.06.006  0.4
2013 Tye KM, Mirzabekov JJ, Warden MR, Ferenczi EA, Tsai HC, Finkelstein J, Kim SY, Adhikari A, Thompson KR, Andalman AS, Gunaydin LA, Witten IB, Deisseroth K. Dopamine neurons modulate neural encoding and expression of depression-related behaviour. Nature. 493: 537-41. PMID 23235822 DOI: 10.1038/nature11740  1
2013 Katavouta A, Thompson KR. Downscaling ocean conditions: Experiments with a quasi-geostrophic model Ocean Modelling. 72: 231-241. DOI: 10.1016/j.ocemod.2013.10.001  0.4
2012 Warden MR, Selimbeyoglu A, Mirzabekov JJ, Lo M, Thompson KR, Kim SY, Adhikari A, Tye KM, Frank LM, Deisseroth K. A prefrontal cortex-brainstem neuronal projection that controls response to behavioural challenge. Nature. 492: 428-32. PMID 23160494 DOI: 10.1038/nature11617  1
2012 Oliver ECJ, Thompson KR. A reconstruction of Madden-Julian oscillation variability from 1905 to 2008 Journal of Climate. 25: 1996-2019. DOI: 10.1175/JCLI-D-11-00154.1  0.4
2012 Oliver ECJ, Sheng J, Thompson KR, Blanco JRU. Extreme surface and near-bottom currents in the northwest Atlantic Natural Hazards. 64: 1425-1446. DOI: 10.1007/s11069-012-0303-5  0.4
2011 Tye KM, Prakash R, Kim SY, Fenno LE, Grosenick L, Zarabi H, Thompson KR, Gradinaru V, Ramakrishnan C, Deisseroth K. Amygdala circuitry mediating reversible and bidirectional control of anxiety. Nature. 471: 358-62. PMID 21389985 DOI: 10.1038/nature09820  1
2011 Zhou Y, Thompson KR, Lu Y. Mapping the relationship between Northern Hemisphere winter surface air temperature and the Madden-Julian oscillation Monthly Weather Review. 139: 2439-2454. DOI: 10.1175/2011MWR3587.1  0.4
2011 Higginson S, Thompson KR, Huang J, Véronneau M, Wright DG. The mean surface circulation of the North Atlantic subpolar gyre: A comparison of estimates derived from new gravity and oceanographic measurements Journal of Geophysical Research: Oceans. 116. DOI: 10.1029/2010JC006877  0.4
2011 Oliver ECJ, Thompson KR. Sea level and circulation variability of the Gulf of Carpentaria: Influence of the Madden-Julian Oscillation and the adjacent deep ocean Journal of Geophysical Research: Oceans. 116. DOI: 10.1029/2010JC006596  0.4
2011 Hasegawa D, Sheng J, Greenberg DA, Thompson KR. Far-field effects of tidal energy extraction in the Minas Passage on tidal circulation in the Bay of Fundy and Gulf of Maine using a nested-grid coastal circulation model Ocean Dynamics. 61: 1845-1868. DOI: 10.1007/s10236-011-0481-9  0.4
2011 Shan S, Sheng J, Thompson KR, Greenberg DA. Simulating the three-dimensional circulation and hydrography of Halifax Harbour using a multi-nested coastal ocean circulation model Ocean Dynamics. 61: 951-976. DOI: 10.1007/s10236-011-0398-3  0.4
2010 Llewellyn ME, Thompson KR, Deisseroth K, Delp SL. Orderly recruitment of motor units under optical control in vivo. Nature Medicine. 16: 1161-5. PMID 20871612 DOI: 10.1038/nm.2228  1
2010 Gradinaru V, Zhang F, Ramakrishnan C, Mattis J, Prakash R, Diester I, Goshen I, Thompson KR, Deisseroth K. Molecular and cellular approaches for diversifying and extending optogenetics. Cell. 141: 154-65. PMID 20303157 DOI: 10.1016/j.cell.2010.02.037  1
2010 Zhang X, Lu Y, Thompson KR, Jiang J, Ritchie H. Tropical Pacific ocean and the Madden-Julian oscillation: Role of wind and buoyancy forcing Journal of Geophysical Research: Oceans. 115. DOI: 10.1029/2009JC005734  0.4
2010 Oliver ECJ, Thompson KR. Madden-Julian oscillation and sea level: Local and remote forcing Journal of Geophysical Research: Oceans. 115. DOI: 10.1029/2009JC005337  0.4
2010 Bernier NB, Thompson KR. Tide and surge energy budgets for Eastern Canadian and Northeast US waters Continental Shelf Research. 30: 353-364. DOI: 10.1016/j.csr.2009.12.003  0.4
2009 Gradinaru V, Mogri M, Thompson KR, Henderson JM, Deisseroth K. Optical deconstruction of parkinsonian neural circuitry. Science (New York, N.Y.). 324: 354-9. PMID 19299587 DOI: 10.1126/science.1167093  1
2009 Airan RD, Thompson KR, Fenno LE, Bernstein H, Deisseroth K. Temporally precise in vivo control of intracellular signalling. Nature. 458: 1025-9. PMID 19295515 DOI: 10.1038/nature07926  1
2009 de Mey P, Craig P, Davidson F, Edwards CA, Ishikawa Y, Kindle JC, Proctor R, Thompson KR, Zhu J. Applications in coastal modeling and forecasting Oceanography. 22: 198-205. DOI: 10.5670/oceanog.2009.79  0.4
2009 Zhang X, Lu Y, Thompson KR. Sea level variations in the tropical Pacific Ocean and the Madden-Julian Oscillation Journal of Physical Oceanography. 39: 1984-1992. DOI: 10.1175/2009JPO4170.1  0.4
2009 Liu Y, Thompson KR. Predicting mesoscale variability of the north atlantic using a physically motivated scheme for assimilating altimeter and argo observations Monthly Weather Review. 137: 2223-2237. DOI: 10.1175/2008MWR2625.1  0.4
2009 Higginson S, Thompson KR, Liu Y. Estimating ocean climatologies for short periods: A simple technique for removing the effect of eddies from temperature and salinity profiles Geophysical Research Letters. 36. DOI: 10.1029/2009GL039647  0.4
2009 Thompson KR, Huang J, Véronneau M, Wright DG, Lu Y. Mean surface topography of the northwest atlantic: comparison of estimates based on satellite, terrestrial gravity, and oceanographic observations Journal of Geophysical Research: Oceans. 114. DOI: 10.1029/2008JC004859  0.4
2009 Gregg WW, Friedrichs MAM, Robinson AR, Rose KA, Schlitzer R, Thompson KR, Doney SC. Skill assessment in ocean biological data assimilation Journal of Marine Systems. 76: 16-33. DOI: 10.1016/j.jmarsys.2008.05.006  0.4
2009 Ohashi K, Sheng J, Thompson KR, Hannah CG, Ritchie H. Numerical study of three-dimensional shelf circulation on the Scotian Shelf using a shelf circulation model Continental Shelf Research. 29: 2138-2156. DOI: 10.1016/j.csr.2009.08.005  0.4
2009 Thompson KR, Bernier NB, Chan P. Extreme sea levels, coastal flooding and climate change with a focus on Atlantic Canada Natural Hazards. 51: 139-150. DOI: 10.1007/s11069-009-9380-5  0.4
2009 Ohashi K, Sheng J, Thompson KR, Hannah CG, Ritchie H. Effect of stratification on tidal circulation over the Scotian Shelf and Gulf of St. Lawrence: A numerical study using a three-dimensional shelf circulation model Ocean Dynamics. 59: 809-825. DOI: 10.1007/s10236-009-0212-7  0.4
2008 Gradinaru V, Thompson KR, Deisseroth K. eNpHR: a Natronomonas halorhodopsin enhanced for optogenetic applications. Brain Cell Biology. 36: 129-39. PMID 18677566 DOI: 10.1007/s11068-008-9027-6  1
2008 Berreville OF, Vézina AF, Thompson KR, Klein B. Exploratory data analysis of the interactions among physics, food web structure, and function in two Arctic polynyas Canadian Journal of Fisheries and Aquatic Sciences. 65: 1036-1046. DOI: 10.1139/F08-016  0.4
2008 Ohashi K, Sheng J, Thompson KR, Hannah CG, Ritchie H. The effect of stratification on the tidal circulation over the Scotian shelf and the gulf of St. Lawrence: A numerical study Proceedings of the International Conference On Estuarine and Coastal Modeling. 57-73. DOI: 10.1061/40990(324)4  0.4
2007 Gradinaru V, Thompson KR, Zhang F, Mogri M, Kay K, Schneider MB, Deisseroth K. Targeting and readout strategies for fast optical neural control in vitro and in vivo. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 27: 14231-8. PMID 18160630 DOI: 10.1523/JNEUROSCI.3578-07.2007  1
2007 Delgado JY, Coba M, Anderson CN, Thompson KR, Gray EE, Heusner CL, Martin KC, Grant SG, O'Dell TJ. NMDA receptor activation dephosphorylates AMPA receptor glutamate receptor 1 subunits at threonine 840. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 27: 13210-21. PMID 18045915 DOI: 10.1523/JNEUROSCI.3056-07.2007  1
2007 Bernier NB, Thompson KR. Tide-surge interaction off the east coast of Canada and northeastern United States Journal of Geophysical Research: Oceans. 112. DOI: 10.1029/2006JC003793  0.4
2007 Bernier NB, Thompson KR, Ou J, Ritchie H. Mapping the return periods of extreme sea levels: Allowing for short sea level records, seasonality, and climate change Global and Planetary Change. 57: 139-150. DOI: 10.1016/j.gloplacha.2006.11.027  0.4
2007 Thompson KR, Ohashi K, Sheng J, Bobanovic J, Ou J. Suppressing bias and drift of coastal circulation models through the assimilation of seasonal climatologies of temperature and salinity Continental Shelf Research. 27: 1303-1316. DOI: 10.1016/j.csr.2006.10.011  0.4
2006 Otis KO, Thompson KR, Martin KC. Importin-mediated nuclear transport in neurons. Current Opinion in Neurobiology. 16: 329-35. PMID 16690311 DOI: 10.1016/j.conb.2006.05.001  1
2006 Bobanović J, Thompson KR, Desjardins S, Ritchie H. Forecasting storm surges along the east coast of Canada and the north-eastern United States: The storm of 21 January 2000 Atmosphere - Ocean. 44: 151-161. DOI: 10.3137/ao.440203  0.4
2006 Ohashi K, Sheng J, Thompson KR, Ritchie H. Simulating seasonal variability of circulation and hydrography on the Scotian Shelf Proceedings of the International Conference On Estuarine and Coastal Modeling. 2006: 123-137. DOI: 10.1061/40876(209)8  0.4
2006 Stacey MW, Shore J, Wright DG, Thompson KR. Modeling events of sea-surface variability using spectral nudging in an eddy permitting model of the northeast Pacific Ocean Journal of Geophysical Research: Oceans. 111. DOI: 10.1029/2005JC003278  0.4
2006 Wright DG, Thompson KR, Lu Y. Assimilating long-term hydrographic information into an eddy-permitting model of the North Atlantic Journal of Geophysical Research: Oceans. 111. DOI: 10.1029/2005JC003200  0.4
2006 Bernier NB, Thompson KR. Predicting the frequency of storm surges and extreme sea levels in the northwest Atlantic Journal of Geophysical Research: Oceans. 111. DOI: 10.1029/2005JC003168  0.4
2006 Thompson KR, Demirov E. Skewness of sea level variability of the world's oceans Journal of Geophysical Research: Oceans. 111. DOI: 10.1029/2004JC002839  0.4
2006 Thompson KR, Wright DG, Lu Y, Demirov E. A simple method for reducing seasonal bias and drift in eddy resolving ocean models Ocean Modelling. 13: 109-125. DOI: 10.1016/j.ocemod.2005.11.003  0.4
2004 Thompson KR, Otis KO, Chen DY, Zhao Y, O'Dell TJ, Martin KC. Synapse to nucleus signaling during long-term synaptic plasticity; a role for the classical active nuclear import pathway. Neuron. 44: 997-1009. PMID 15603742 DOI: 10.1016/j.neuron.2004.11.025  1
2004 Book JW, Pistek P, Perkins H, Thompson KR, Teague WJ, Jacobs GA, Suk MS, Chang KI, Lee JC, Choi BH. Data assimilation modeling of the barotropic tides in the Korea/Tsushima strait Journal of Oceanography. 60: 977-993. DOI: 10.1007/s10872-005-0006-6  0.4
2003 Zakardjian BA, Sheng J, Runge JA, McLaren I, Plourde S, Thompson KR, Gratton Y. Effects of temperature and circulation on the population dynamics of Calanus finmarchicus in the Gulf of St. Lawrence and Scotian Shelf: Study with a coupled, three-dimensional hydrodynamic, stage-based life history model Journal of Geophysical Research C: Oceans. 108: GLO 17-1 - GLO 17-22.  0.4
2003 Thompson KR, Sheng J, Smith PC, Cong L. Prediction of surface currents and drifter trajectories on the inner Scotian shelf Journal of Geophysical Research C: Oceans. 108: 3-1.  0.4
2002 Thompson KR, Dowd M, Shen Y, Greenberg DA. Probabilistic characterization of tidal mixing in a coastal embayment: A Markov Chain approach Continental Shelf Research. 22: 1603-1614. DOI: 10.1016/S0278-4343(02)00024-9  0.4
2001 Lu Y, Thompson KR, Wright DG. Tidal currents and mixing in the Gulf of St. Lawrence: An application of the incremental approach to data assimilation Canadian Journal of Fisheries and Aquatic Sciences. 58: 723-735. DOI: 10.1139/cjfas-58-4-723  0.4
2001 Bobanović J, Thompson KR. The influence of local and remote winds on the synoptic sea level variability in the Gulf of Saint Lawrence Continental Shelf Research. 21: 129-144. DOI: 10.1016/S0278-4343(00)00079-0  0.4
2001 Sheng J, Thompson KR, Cong L, Smith PC, Lawrence DJ. Effect of wind and local density on the subtidal circulation of the inner Scotian Shelf Continental Shelf Research. 21: 1-19. DOI: 10.1016/S0278-4343(00)00075-3  0.4
2001 Yaremchuk MI, Nechaev DA, Thompson KR. Seasonal variation of the North Atlantic Current Journal of Geophysical Research: Oceans. 106: 6835-6851.  0.4
2000 Thompson KR, Dowd M, Lu Y, Smith B. Oceanographic data assimilation and regression analysis Environmetrics. 11: 183-196. DOI: 10.1002/(SICI)1099-095X(200003/04)11:2<183::AID-ENV401>3.0.CO;2-H  0.4
1998 Thompson KR, Griffin DA. A model of the circulation on the outer Scotian Shelf with open boundary conditions inferred by data assimilation Journal of Geophysical Research: Oceans. 103: 30641-30660.  0.4
1998 Thompson KR, Kelley DE, Sturley D, Topliss B, Leal R. Nearshore circulation and synthetic aperture radar: An exploratory study International Journal of Remote Sensing. 19: 1161-1178.  0.4
1997 Lochmann SE, Taggart CT, Griffin DA, Thompson KR, Maillet GL. Abundance and condition of larval cod (Gadus morhua) at a convergent front on Western Bank, Scotian Shelf Canadian Journal of Fisheries and Aquatic Sciences. 54: 1461-1479. DOI: 10.1139/cjfas-54-7-1461  0.4
1997 Dowd M, Thompson KR. Forecasting coastal circulation using an approximate Kalman filter based on dynamical modes Continental Shelf Research. 17: 1715-1735. DOI: 10.1016/S0278-4343(97)00046-0  0.4
1997 Thompson KR, Sheng J. Subtidal circulation on the Scotian Shelf: Assessing the hindcast skill of a linear, barotropic model Journal of Geophysical Research C: Oceans. 102: 24987-25003.  0.4
1997 Buehner M, Thompson KR, Peterson I. An inverse method for tracking ice motion in the marginal ice zone using sequential satellite images Journal of Atmospheric and Oceanic Technology. 14: 1455-1466.  0.4
1997 Bajkowski S, Thompson KR. Corporate criminal liability American Criminal Law Review. 34: 445-456.  1
1997 Yingshuo S, Thompson KR. Oscillating flow of a homogeneous fluid over an isolated topographic feature Atmosphere - Ocean. 35: 229-255.  0.4
1997 Thompson KR. Cell phone snooping: Why electronic eavesdropping goes unpunished American Criminal Law Review. 35: 137.  1
1996 Sheng J, Thompson KR. A robust method for diagnosing regional shelf circulation from scattered density profiles Journal of Geophysical Research C: Oceans. 101: 25647-25659.  0.4
1996 Dowd M, Thompson KR. Extraction of tidal streams from a ship-borne acoustic Doppler current profiler using a statistical-dynamical model Journal of Geophysical Research C: Oceans. 101: 8943-8956.  0.4
1996 Griffin DA, Thompson KR. The adjoint method of data assimilation used operationally for shelf circulation Journal of Geophysical Research C: Oceans. 101: 3457-3477.  0.4
1996 Sheng J, Thompson KR. Summer surface circulation on the Newfoundland Shelf and Grand Banks: The roles of local density gradients and remote forcing Atmosphere - Ocean. 34: 257-284.  0.4
1995 Bowen AJ, Griffin DA, Hazen DG, Matheson SA, Thompson KR. Shipboard nowcasting of shelf circulation Continental Shelf Research. 15: 115-128. DOI: 10.1016/0278-4343(94)P1815-S  0.4
1995 Myers RA, Barrowman NJ, Thompson KR. Synchrony of recruitment across the North Atlantic: an update. (Or, "now you see it, now you don't!") Ices Journal of Marine Science. 52: 103-110.  0.4
1994 Umoh JU, Thompson KR. Surface heat flux, horizontal advection, and the seasonal evolution of water temperature on the Scotian Shelf Journal of Geophysical Research. 99: 20,403-20,416.  0.4
1993 Sclafani M, Taggart CT, Thompson KR. Condition, buoyancy and the distribution of larval fish: Implications for vertical migration and retention Journal of Plankton Research. 15: 413-435. DOI: 10.1093/plankt/15.4.413  0.4
1993 Jinyu Sheng, Thompson KR. A modified Galerkin-spectral model for three-dimensional, barotropic, wind-driven shelf circulation Journal of Geophysical Research. 98: 7011-7022.  0.4
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