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Eric Darve - Publications

Affiliations: 
Stanford University, Palo Alto, CA 
Area:
Mathematics
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75 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Pegolotti L, Pfaller MR, Rubio NL, Ding K, Brugarolas Brufau R, Darve E, Marsden AL. Learning reduced-order models for cardiovascular simulations with graph neural networks. Computers in Biology and Medicine. 168: 107676. PMID 38039892 DOI: 10.1016/j.compbiomed.2023.107676  0.502
2020 Cambier L, Chen C, Boman EG, Rajamanickam S, Tuminaro RS, Darve E. An Algebraic Sparsified Nested Dissection Algorithm Using Low-Rank Approximations Siam Journal On Matrix Analysis and Applications. 41: 715-746. DOI: 10.1137/19M123806X  0.38
2020 Ghorbanidehno H, Kokkinaki A, Lee J, Darve E. Recent developments in fast and scalable inverse modeling and data assimilation methods in hydrology Journal of Hydrology. 591: 125266. DOI: 10.1016/J.Jhydrol.2020.125266  0.422
2020 Takahashi T, Chen C, Darve E. Parallelization of the inverse fast multipole method with an application to boundary element method Computer Physics Communications. 247: 106975. DOI: 10.1016/J.Cpc.2019.106975  0.422
2020 Xu K, Darve E. Isogeometric collocation method for the fractional Laplacian in the 2D bounded domain Computer Methods in Applied Mechanics and Engineering. 364: 112936. DOI: 10.1016/J.Cma.2020.112936  0.419
2019 Wang R, Li Y, Mahoney MW, Darve E. Block Basis Factorization for Scalable Kernel Evaluation Siam Journal On Matrix Analysis and Applications. 40: 1497-1526. DOI: 10.1137/18M1212586  0.32
2019 Cambier L, Darve E. Fast Low-Rank Kernel Matrix Factorization Using Skeletonized Interpolation Siam Journal On Scientific Computing. 41: A1652-A1680. DOI: 10.1137/17M1133749  0.384
2019 Chen C, Cambier L, Boman EG, Rajamanickam S, Tuminaro RS, Darve E. A robust hierarchical solver for ill-conditioned systems with applications to ice sheet modeling Journal of Computational Physics. 396: 819-836. DOI: 10.1016/J.Jcp.2019.07.024  0.388
2019 Yang K, Pouransari H, Darve E. Sparse hierarchical solvers with guaranteed convergence International Journal For Numerical Methods in Engineering. 120: 964-986. DOI: 10.1002/Nme.6166  0.37
2018 Agullo E, Darve E, Giraud L, Harness Y. Low-Rank Factorizations in Data Sparse Hierarchical Algorithms for Preconditioning Symmetric Positive Definite Matrices Siam Journal On Matrix Analysis and Applications. 39: 1701-1725. DOI: 10.1137/17M1151158  0.41
2018 Wang R, Li Y, Darve E. On the Numerical Rank of Radial Basis Function Kernels in High Dimensions Siam Journal On Matrix Analysis and Applications. 39: 1810-1835. DOI: 10.1137/17M1135803  0.43
2018 Chen C, Aubry S, Oppelstrup T, Arsenlis A, Darve E. Fast algorithms for evaluating the stress field of dislocation lines in anisotropic elastic media Modelling and Simulation in Materials Science and Engineering. 26: 045007. DOI: 10.1088/1361-651X/Aab7Bb  0.389
2018 Pichon G, Darve E, Faverge M, Ramet P, Roman J. Sparse supernodal solver using block low-rank compression: Design, performance and analysis Journal of Computational Science. 27: 255-270. DOI: 10.1016/J.Jocs.2018.06.007  0.348
2017 Li Z, Lee HS, Darve E, Karniadakis GE. Computing the non-Markovian coarse-grained interactions derived from the Mori-Zwanzig formalism in molecular systems: Application to polymer melts. The Journal of Chemical Physics. 146: 014104. PMID 28063444 DOI: 10.1063/1.4973347  0.348
2017 Pouransari H, Coulier P, Darve E. Fast Hierarchical Solvers For Sparse Matrices Using Extended Sparsification and Low-Rank Approximation Siam Journal On Scientific Computing. 39: A797-A830. DOI: 10.1137/15M1046939  0.468
2017 Coulier P, Pouransari H, Darve E. The Inverse Fast Multipole Method: Using a Fast Approximate Direct Solver as a Preconditioner for Dense Linear Systems Siam Journal On Scientific Computing. 39: A761-A796. DOI: 10.1137/15M1034477  0.431
2017 Létourneau P, Wu Y, Papanicolaou G, Garnier J, Darve E. A numerical study of super-resolution through fast 3D wideband algorithm for scattering in highly-heterogeneous media Wave Motion. 70: 113-134. DOI: 10.1016/J.Wavemoti.2016.08.012  0.758
2017 Takahashi T, Coulier P, Darve E. Application of the inverse fast multipole method as a preconditioner in a 3D Helmholtz boundary element method Journal of Computational Physics. 341: 406-428. DOI: 10.1016/J.Jcp.2017.04.016  0.448
2017 Ghorbanidehno H, Kokkinaki A, Kitanidis PK, Darve E. Optimal estimation and scheduling in aquifer management using the rapid feedback control method Advances in Water Resources. 110: 310-318. DOI: 10.1016/J.Advwatres.2017.10.011  0.365
2016 Aminfar A, Ambikasaran S, Darve E. A fast block low-rank dense solver with applications to finite-element matrices Journal of Computational Physics. 304: 170-188. DOI: 10.1016/J.Jcp.2015.10.012  0.734
2016 Coulier P, Darve E. Efficient mesh deformation based on radial basis function interpolation by means of the inverse fast multipole method Computer Methods in Applied Mechanics and Engineering. 308: 206-309. DOI: 10.1016/J.Cma.2016.05.029  0.497
2016 Aminfar AH, Darve E. A fast, memory efficient and robust sparse preconditioner based on a multifrontal approach with applications to finite-element matrices International Journal For Numerical Methods in Engineering. 107: 520-540. DOI: 10.1002/Nme.5196  0.764
2016 Agullo E, Bramas B, Coulaud O, Darve E, Messner M, Takahashi T. Task-based FMM for heterogeneous architectures Concurrency Computation. 28: 2608-2629. DOI: 10.1002/Cpe.3723  0.347
2015 Feng H, Costaouec R, Darve E, Izaguirre JA. A comparison of weighted ensemble and Markov state model methodologies. The Journal of Chemical Physics. 142: 214113. PMID 26049485 DOI: 10.1063/1.4921890  0.328
2015 Pouransari H, Darve E. Optimizing the adaptive fast multipole method for fractal sets Siam Journal On Scientific Computing. 37: A1040-A1066. DOI: 10.1137/140962681  0.362
2015 Ghorbanidehno H, Kokkinaki A, Li JY, Darve E, Kitanidis PK. Real-time data assimilation for large-scale systems: The spectral Kalman filter Advances in Water Resources. 86: 260-272. DOI: 10.1016/J.Advwatres.2015.07.017  0.418
2015 Wong J, Kuhl E, Darve E. A new sparse matrix vector multiplication graphics processing unit algorithm designed for finite element problems International Journal For Numerical Methods in Engineering. 102: 1784-1814. DOI: 10.1002/Nme.4865  0.414
2014 Abdul-Wahid B, Feng H, Rajan D, Costaouec R, Darve E, Thain D, Izaguirre JA. AWE-WQ: fast-forwarding molecular dynamics using the accelerated weighted ensemble. Journal of Chemical Information and Modeling. 54: 3033-43. PMID 25207854 DOI: 10.1021/Ci500321G  0.357
2014 Agullo E, Bramas B, Coulaud O, Darve E, Messner M, Takahashi T. Task-based FMM for multicore architectures Siam Journal On Scientific Computing. 36: C66-C93. DOI: 10.1137/130915662  0.376
2014 Létourneau PD, Cecka C, Darve E. Cauchy fast multipole method for general analytic kernels Siam Journal On Scientific Computing. 36. DOI: 10.1137/120891617  0.789
2014 Létourneau PD, Cecka C, Darve E. Generalized fast multipole method Iop Conference Series: Materials Science and Engineering. 10. DOI: 10.1088/1757-899X/10/1/012230  0.381
2014 Solomon J, Chung P, Srivastava D, Darve E. Method and advantages of genetic algorithms in parameterization of interatomic potentials: Metal oxides Computational Materials Science. 81: 453-465. DOI: 10.1016/J.Commatsci.2013.08.054  0.597
2014 Li JY, Ambikasaran S, Darve EF, Kitanidis PK. A Kalman filter powered by H2 -matrices for quasi-continuous data assimilation problems Water Resources Research. 50: 3734-3749. DOI: 10.1002/2013Wr014607  0.78
2013 Cecka C, Darve E. Fourier-based fast multipole method for the Helmholtz equation Siam Journal On Scientific Computing. 35. DOI: 10.1137/11085774X  0.413
2013 Kia A, Darve E. The accuracy of the CHARMM22/CMAP and AMBER ff99SB force fields for modelling the antimicrobial peptide cecropin P1 Molecular Simulation. 39: 922-936. DOI: 10.1080/08927022.2013.781599  0.74
2013 Li S, Wu W, Darve E. Erratum to “A fast algorithm for sparse matrix computations related to inversion” [J. Comput. Phys. 242 (2013) 915–945] Journal of Computational Physics. 251: 535-536. DOI: 10.1016/J.Jcp.2013.06.001  0.476
2013 Li S, Wu W, Darve E. A fast algorithm for sparse matrix computations related to inversion Journal of Computational Physics. 242: 915-945. DOI: 10.1016/J.Jcp.2013.01.036  0.539
2013 Ambikasaran S, Darve E. An O(N log N) Fast Direct Solver for Partial Hierarchically Semi-Separable Matrices: With Application to Radial Basis Function Interpolation Journal of Scientific Computing. 57: 477-501. DOI: 10.1007/S10915-013-9714-Z  0.789
2013 Ambikasaran S, Li JY, Kitanidis PK, Darve E. Large-scale stochastic linear inversion using hierarchical matrices: Illustrated with an application to crosswell tomography in seismic imaging Computational Geosciences. 17: 913-927. DOI: 10.1007/S10596-013-9364-0  0.797
2012 Saibaba AK, Ambikasaran S, Yue Li J, Kitanidis PK, Darve EF. Application of hierarchical matrices to linear inverse problems in geostatistics Oil and Gas Science and Technology. 67: 857-875. DOI: 10.2516/Ogst/2012064  0.784
2012 Messner M, Schanz M, Darve E. Fast directional multilevel summation for oscillatory kernels based on Chebyshev interpolation Journal of Computational Physics. 231: 1175-1196. DOI: 10.1016/J.Jcp.2011.09.027  0.378
2012 Li S, Darve E. Extension and optimization of the FIND algorithm: Computing Green's and less-than Green's functions Journal of Computational Physics. 231: 1121-1139. DOI: 10.1016/J.Jcp.2011.05.027  0.519
2012 Takahashi T, Cecka C, Fong W, Darve E. Optimizing the multipole-to-local operator in the fast multipole method for graphical processing units International Journal For Numerical Methods in Engineering. 89: 105-133. DOI: 10.1002/Nme.3240  0.654
2012 Dharmaraja S, Kesari H, Darve E, Lew AJ. Time integrators based on approximate discontinuous Hamiltonians International Journal For Numerical Methods in Engineering. 89: 71-104. DOI: 10.1002/Nme.3236  0.415
2011 Darve E, Cecka C, Takahashi T. The fast multipole method on parallel clusters, multicore processors, and graphics processing units Comptes Rendus - Mecanique. 339: 185-193. DOI: 10.1016/J.Crme.2010.12.005  0.363
2011 Cecka C, Lew AJ, Darve E. Assembly of finite element methods on graphics processors International Journal For Numerical Methods in Engineering. 85: 640-669. DOI: 10.1002/Nme.2989  0.403
2009 Darve E, Solomon J, Kia A. Computing generalized Langevin equations and generalized Fokker-Planck equations. Proceedings of the National Academy of Sciences of the United States of America. 106: 10884-9. PMID 19549838 DOI: 10.1073/Pnas.0902633106  0.749
2009 Li S, Darve E. Optimization of the FIND algorithm to compute the inverse of a sparse matrix Proceedings - 2009 13th International Workshop On Computational Electronics, Iwce 2009. DOI: 10.1109/IWCE.2009.5091136  0.306
2009 Fong W, Darve E. The black-box fast multipole method Journal of Computational Physics. 228: 8712-8725. DOI: 10.1016/J.Jcp.2009.08.031  0.663
2009 Petersen DE, Li S, Stokbro K, Sørensen HHB, Hansen PC, Skelboe S, Darve E. A hybrid method for the parallel computation of Green's functions Journal of Computational Physics. 228: 5020-5039. DOI: 10.1016/J.Jcp.2009.03.035  0.499
2008 Darve E, Rodríguez-Gómez D, Pohorille A. Adaptive biasing force method for scalar and vector free energy calculations. The Journal of Chemical Physics. 128: 144120. PMID 18412436 DOI: 10.1063/1.2829861  0.356
2008 Elsen E, LeGresley P, Darve E. Large calculation of the flow over a hypersonic vehicle using a GPU Journal of Computational Physics. 227: 10148-10161. DOI: 10.1016/J.Jcp.2008.08.023  0.735
2008 Li S, Ahmed S, Klimeck G, Darve E. Computing entries of the inverse of a sparse matrix using the FIND algorithm Journal of Computational Physics. 227: 9408-9427. DOI: 10.1016/J.Jcp.2008.06.033  0.539
2008 Kia A, Kim D, Darve E. Fast electrostatic force calculation on parallel computer clusters Journal of Computational Physics. 227: 8551-8567. DOI: 10.1016/J.Jcp.2008.06.016  0.796
2007 Fong W, Darve E, Lew A. Stability of asynchronous variational integrators Proceedings - Workshop On Principles of Advanced and Distributed Simulation, Pads. 38-44. DOI: 10.1016/J.Jcp.2008.05.017  0.639
2007 Li S, Ahmed S, Darve E. Fast inverse using nested dissection for NEGF Journal of Computational Electronics. 6: 187-190. DOI: 10.1007/S10825-006-0112-8  0.47
2006 Saintillan D, Shaqfeh ESG, Darve E. Stabilization of a suspension of sedimenting rods by induced-charge electrophoresis Physics of Fluids. 18. DOI: 10.1063/1.2404948  0.632
2006 Saintillan D, Shaqfeh ESG, Darve E. The effect of stratification on the wave number selection in the instability of sedimenting spheroids Physics of Fluids. 18. DOI: 10.1063/1.2396913  0.644
2006 Saintillan D, Shaqfeh ESG, Darve E. The growth of concentration fluctuations in dilute dispersions of orientable and deformable particles under sedimentation Journal of Fluid Mechanics. 553: 347-388. DOI: 10.1017/S0022112006009025  0.648
2006 Saintillan D, Darve E, Shaqfeh ESG. Hydrodynamic interactions in the induced-charge electrophoresis of colloidal rod dispersions Journal of Fluid Mechanics. 563: 223-259. DOI: 10.1017/S0022112006001376  0.655
2006 Saintillan D, Shaqfeh ESG, Darve E. Effect of flexibility on the shear-induced migration of short-chain polymers in parabolic channel flow Journal of Fluid Mechanics. 557: 297-306. DOI: 10.1017/S0022112006000243  0.617
2005 Saintillan D, Darve E, Shaqfeh ESG. Microstructure in the sedimentation of anisotropic and deformable particles American Society of Mechanical Engineers, Fluids Engineering Division (Publication) Fed. 261: 797-803. DOI: 10.1115/IMECE2005-80119  0.621
2005 Saintillan D, Darve E, Shaqfeh ESG. Induced-charge electrophoresis in suspensions of rodlike particles: Theory and simulations American Society of Mechanical Engineers, Fluids Engineering Division (Publication) Fed. 261: 251-256. DOI: 10.1115/IMECE2005-80104  0.607
2005 Saintillan D, Darve E, Shaqfeh ESG. A smooth particle-mesh Ewald algorithm for Strokes suspension simulations: The sedimentation of fibres Physics of Fluids. 17: 033301-1-033301-21. DOI: 10.1063/1.1862262  0.673
2005 Saintillan D, Darve E, Shaqfeh ESG. Hydrodynamic interactions in colloidal dispersions of conducting rods under induced-charge electrophoresis Aiche Annual Meeting, Conference Proceedings. 208.  0.631
2005 Saintillan D, Shaqfeh ESG, Darve E. Concentration fluctuations in dilute suspensions of orientable and deformable particles under sedimentation Aiche Annual Meeting, Conference Proceedings. 1058.  0.633
2004 Darve E, Havé P. A fast multipole method for Maxwell equations stable at all frequencies. Philosophical Transactions. Series a, Mathematical, Physical, and Engineering Sciences. 362: 603-28. PMID 15306510 DOI: 10.1098/Rsta.2003.1337  0.441
2004 Rodriguez-Gomez D, Darve E, Pohorille A. Assessing the efficiency of free energy calculation methods. The Journal of Chemical Physics. 120: 3563-78. PMID 15268518 DOI: 10.1063/1.1642607  0.343
2004 Darve E, Havé P. Efficient fast multipole method for low-frequency scattering Journal of Computational Physics. 197: 341-363. DOI: 10.1016/J.Jcp.2003.12.002  0.444
2003 Darve E, Havé P. Fast multipole method for low-frequency electromagnetic scattering Computational Fluid and Solid Mechanics 2003. 1299-1302. DOI: 10.1016/B978-008044046-0.50320-1  0.33
2003 Sinha S, Dhir VK, Shi B, Freund JB, Darve E. Surface tension evaluation in Lennard-Jones fluid system with untruncated potentials Proceedings of the Asme Summer Heat Transfer Conference. 2003: 711-714.  0.577
2002 Darve E, Wilson MA, Pohorille A. Calculating free energies using a scaled-force molecular dynamics algorithm Molecular Simulation. 28: 113-144. DOI: 10.1080/08927020211975  0.319
2001 Darve E. The fast multipole method I: Error analysis and asymptotic complexity Siam Journal On Numerical Analysis. 38: 98-128. DOI: 10.1137/S0036142999330379  0.401
2000 Darve E. The Fast Multipole Method: Numerical Implementation Journal of Computational Physics. 160: 195-240. DOI: 10.1006/Jcph.2000.6451  0.46
1997 Darve E. Fast-multipole method: A mathematical study Comptes Rendus De L'Academie Des Sciences - Series I: Mathematics. 325: 1037-1042. DOI: 10.1016/S0764-4442(97)89101-X  0.422
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