John M. Beggs - Publications

Indiana University, Bloomington, Bloomington, IN, United States 
network dynamics, LTP, computational neuroscience

41 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Ren N, Ito S, Hafizi H, Beggs JM, Stevenson IH. Model-based detection of putative synaptic connections from spike recordings with latency and type constraints. Journal of Neurophysiology. PMID 32937091 DOI: 10.1152/jn.00066.2020  0.68
2020 Sherrill SP, Timme NM, Beggs JM, Newman EL. Correlated activity favors synergistic processing in local cortical networks in vitro at synaptically relevant timescales. Network Neuroscience (Cambridge, Mass.). 4: 678-697. PMID 32885121 DOI: 10.1162/netn_a_00141  0.4
2016 Timme NM, Marshall NJ, Bennett N, Ripp M, Lautzenhiser E, Beggs JM. Criticality Maximizes Complexity in Neural Tissue. Frontiers in Physiology. 7: 425. PMID 27729870 DOI: 10.3389/fphys.2016.00425  0.4
2016 Hiolski EM, Ito S, Beggs JM, Lefebvre KA, Litke AM, Smith DR. Domoic acid disrupts the activity and connectivity of neuronal networks in organotypic brain slice cultures. Neurotoxicology. PMID 27506300 DOI: 10.1016/j.neuro.2016.08.004  1
2016 Marshall N, Timme NM, Bennett N, Ripp M, Lautzenhiser E, Beggs JM. Analysis of Power Laws, Shape Collapses, and Neural Complexity: New Techniques and MATLAB Support via the NCC Toolbox. Frontiers in Physiology. 7: 250. PMID 27445842 DOI: 10.3389/fphys.2016.00250  0.4
2016 Timme NM, Ito S, Myroshnychenko M, Nigam S, Shimono M, Yeh FC, Hottowy P, Litke AM, Beggs JM. High-Degree Neurons Feed Cortical Computations. Plos Computational Biology. 12: e1004858. PMID 27159884 DOI: 10.1371/journal.pcbi.1004858  1
2016 Nakhnikian A, Ito S, Dwiel LL, Grasse LM, Rebec GV, Lauridsen LN, Beggs JM. A Novel Cross-Frequency Coupling Detection Method Using the Generalized Morse Wavelets. Journal of Neuroscience Methods. PMID 27129446 DOI: 10.1016/j.jneumeth.2016.04.019  1
2016 Nigam S, Shimono M, Ito S, Yeh FC, Timme N, Myroshnychenko M, Lapish CC, Tosi Z, Hottowy P, Smith WC, Masmanidis SC, Litke AM, Sporns O, Beggs JM. Rich-Club Organization in Effective Connectivity among Cortical Neurons. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 36: 670-84. PMID 26791200 DOI: 10.1523/JNEUROSCI.2177-15.2016  1
2015 Beggs J. Editorial: Can there be a physics of the brain? Physical Review Letters. 114. DOI: 10.1103/PhysRevLett.114.220001  1
2014 Williams-García RV, Moore M, Beggs JM, Ortiz G. Quasicritical brain dynamics on a nonequilibrium Widom line. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 90: 062714. PMID 25615136 DOI: 10.1103/PhysRevE.90.062714  1
2014 Timme N, Ito S, Myroshnychenko M, Yeh FC, Hiolski E, Hottowy P, Beggs JM. Multiplex networks of cortical and hippocampal neurons revealed at different timescales. Plos One. 9: e115764. PMID 25536059 DOI: 10.1371/journal.pone.0115764  1
2014 Shimono M, Beggs JM. Functional Clusters, Hubs, and Communities in the Cortical Microconnectome. Cerebral Cortex (New York, N.Y. : 1991). PMID 25336598 DOI: 10.1093/cercor/bhu252  1
2014 Ito S, Yeh FC, Hiolski E, Rydygier P, Gunning DE, Hottowy P, Timme N, Litke AM, Beggs JM. Large-scale, high-resolution multielectrode-array recording depicts functional network differences of cortical and hippocampal cultures. Plos One. 9: e105324. PMID 25126851 DOI: 10.1371/journal.pone.0105324  1
2014 Nakhnikian A, Rebec GV, Grasse LM, Dwiel LL, Shimono M, Beggs JM. Behavior modulates effective connectivity between cortex and striatum. Plos One. 9: e89443. PMID 24618981 DOI: 10.1371/journal.pone.0089443  1
2014 Timme N, Alford W, Flecker B, Beggs JM. Synergy, redundancy, and multivariate information measures: an experimentalist's perspective. Journal of Computational Neuroscience. 36: 119-40. PMID 23820856 DOI: 10.1007/s10827-013-0458-4  1
2013 Gunning DE, Beggs JM, Dabrowski W, Hottowy P, Kenney CJ, Sher A, Litke AM, Mathieson K. Dense arrays of micro-needles for recording and electrical stimulation of neural activity in acute brain slices. Journal of Neural Engineering. 10: 016007. PMID 23234809 DOI: 10.1088/1741-2560/10/1/016007  1
2013 Beggs JM. Neuronal networks: Focus amidst the noise Nature Physics. 9: 533-534. DOI: 10.1038/nphys2707  1
2013 Peng J, Beggs JM. Attaining and maintaining criticality in a neuronal network model Physica a: Statistical Mechanics and Its Applications. 392: 1611-1620. DOI: 10.1016/j.physa.2012.11.013  1
2012 Friedman N, Ito S, Brinkman BA, Shimono M, DeVille RE, Dahmen KA, Beggs JM, Butler TC. Universal critical dynamics in high resolution neuronal avalanche data. Physical Review Letters. 108: 208102. PMID 23003192 DOI: 10.1103/PhysRevLett.108.208102  1
2012 Beggs JM, Timme N. Being critical of criticality in the brain. Frontiers in Physiology. 3: 163. PMID 22701101 DOI: 10.3389/fphys.2012.00163  1
2011 Ito S, Hansen ME, Heiland R, Lumsdaine A, Litke AM, Beggs JM. Extending transfer entropy improves identification of effective connectivity in a spiking cortical network model. Plos One. 6: e27431. PMID 22102894 DOI: 10.1371/journal.pone.0027431  1
2011 Flecker B, Alford W, Beggs JM, Williams PL, Beer RD. Partial information decomposition as a spatiotemporal filter. Chaos (Woodbury, N.Y.). 21: 037104. PMID 21974667 DOI: 10.1063/1.3638449  1
2010 Hobbs JP, Smith JL, Beggs JM. Aberrant neuronal avalanches in cortical tissue removed from juvenile epilepsy patients. Journal of Clinical Neurophysiology : Official Publication of the American Electroencephalographic Society. 27: 380-6. PMID 21076327 DOI: 10.1097/WNP.0b013e3181fdf8d3  1
2010 Chen W, Hobbs JP, Tang A, Beggs JM. A few strong connections: optimizing information retention in neuronal avalanches. Bmc Neuroscience. 11: 3. PMID 20053290 DOI: 10.1186/1471-2202-11-3  1
2010 Yeh FC, Tang A, Hobbs JP, Hottowy P, Dabrowski W, Sher A, Litke A, Beggs JM. Maximum entropy approaches to living neural networks Entropy. 12: 89-106. DOI: 10.3390/e12010089  1
2009 Schachter SC, Guttag J, Schiff SJ, Schomer DL. Advances in the application of technology to epilepsy: the CIMIT/NIO Epilepsy Innovation Summit. Epilepsy & Behavior : E&B. 16: 3-46. PMID 19780225 DOI: 10.1016/j.yebeh.2009.06.028  1
2008 Hsu D, Chen W, Hsu M, Beggs JM. An open hypothesis: is epilepsy learned, and can it be unlearned? Epilepsy & Behavior : E&B. 13: 511-22. PMID 18573694 DOI: 10.1016/j.yebeh.2008.05.007  1
2008 Tang A, Jackson D, Hobbs J, Chen W, Smith JL, Patel H, Prieto A, Petrusca D, Grivich MI, Sher A, Hottowy P, Dabrowski W, Litke AM, Beggs JM. A maximum entropy model applied to spatial and temporal correlations from cortical networks in vitro. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 28: 505-18. PMID 18184793 DOI: 10.1523/JNEUROSCI.3359-07.2008  1
2008 Beggs JM. The criticality hypothesis: how local cortical networks might optimize information processing. Philosophical Transactions. Series a, Mathematical, Physical, and Engineering Sciences. 366: 329-43. PMID 17673410 DOI: 10.1098/rsta.2007.2092  1
2007 Hsu D, Tang A, Hsu M, Beggs JM. Simple spontaneously active Hebbian learning model: homeostasis of activity and connectivity, and consequences for learning and epileptogenesis. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 76: 041909. PMID 17995028 DOI: 10.1103/PhysRevE.76.041909  1
2007 Beggs JM. Theoretical neuroscience: How to build a critical mind Nature Physics. 3: 834-835. DOI: 10.1038/nphys799  1
2007 Beggs JM, Klukas J, Chen W. Connectivity and dynamics in local cortical networks Understanding Complex Systems. 2007: 91-116. DOI: 10.1007/978-3-540-71512-2_3  1
2006 Hsu D, Beggs JM. Neuronal avalanches and criticality: A dynamical model for homeostasis Neurocomputing. 69: 1134-1136. DOI: 10.1016/j.neucom.2005.12.060  1
2005 Plenz D. Comment on "Critical branching captures activity in living neural networks and maximizes the number of metastable states". Physical Review Letters. 95: 219801; author reply. PMID 16384195 DOI: 10.1103/PhysRevLett.95.219801  1
2005 Haldeman C, Beggs JM. Critical branching captures activity in living neural networks and maximizes the number of metastable States. Physical Review Letters. 94: 058101. PMID 15783702 DOI: 10.1103/PhysRevLett.94.058101  1
2004 Beggs JM, Plenz D. Neuronal avalanches are diverse and precise activity patterns that are stable for many hours in cortical slice cultures. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 24: 5216-29. PMID 15175392 DOI: 10.1523/JNEUROSCI.0540-04.2004  1
2003 Beggs JM, Plenz D. Neuronal avalanches in neocortical circuits. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 23: 11167-77. PMID 14657176  1
2003 Johnson JD, Plenz D, Beggs J, Li W, Mieier M, Miltner N, Owen K. Analysis of spontaneous activity in cultured brain tissue using the discrete wavelet transform Proceedings - 3rd Ieee Symposium On Bioinformatics and Bioengineering, Bibe 2003. 60-66. DOI: 10.1109/BIBE.2003.1188930  1
2001 Beggs JM. A statistical theory of long-term potentiation and depression. Neural Computation. 13: 87-111. PMID 11177429 DOI: 10.1162/089976601300014646  1
2000 Beggs JM, Moyer JR, McGann JP, Brown TH. Prolonged synaptic integration in perirhinal cortical neurons. Journal of Neurophysiology. 83: 3294-8. PMID 10848549  1
1994 Beggs JM, Kairiss EW. Electrophysiology and morphology of neurons in rat perirhinal cortex. Brain Research. 665: 18-32. PMID 7882014 DOI: 10.1016/0006-8993(94)91147-9  1
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