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Sebastian Sudek, Ph.D. - Publications

Affiliations: 
2006 University of California, San Diego, La Jolla, CA 
Area:
General Biology, Microbiology Biology, Biochemistry
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9/31 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2015 Šev?íková T, Horák A, Klimeš V, Zbránková V, Demir-Hilton E, Sudek S, Jenkins J, Schmutz J, P?ibyl P, Fousek J, Vl?ek ?, Lang BF, Oborník M, Worden AZ, Eliáš M. Updating algal evolutionary relationships through plastid genome sequencing: did alveolate plastids emerge through endosymbiosis of an ochrophyte? Scientific Reports. 5: 10134. PMID 26017773 DOI: 10.1038/srep10134  0.326
2014 McRose D, Guo J, Monier A, Sudek S, Wilken S, Yan S, Mock T, Archibald JM, Begley TP, Reyes-Prieto A, Worden AZ. Alternatives to vitamin B1 uptake revealed with discovery of riboswitches in multiple marine eukaryotic lineages. The Isme Journal. 8: 2517-29. PMID 25171333 DOI: 10.1038/Ismej.2014.146  0.385
2013 Monier A, Sudek S, Fast NM, Worden AZ. Gene invasion in distant eukaryotic lineages: discovery of mutually exclusive genetic elements reveals marine biodiversity. The Isme Journal. 7: 1764-74. PMID 23635865 DOI: 10.1038/ismej.2013.70  0.325
2007 Sudek S, Lopanik NB, Waggoner LE, Hildebrand M, Anderson C, Liu H, Patel A, Sherman DH, Haygood MG. Identification of the putative bryostatin polyketide synthase gene cluster from "Candidatus Endobugula sertula", the uncultivated microbial symbiont of the marine bryozoan Bugula neritina. Journal of Natural Products. 70: 67-74. PMID 17253852 DOI: 10.1021/Np060361D  0.611
2006 Donia MS, Hathaway BJ, Sudek S, Haygood MG, Rosovitz MJ, Ravel J, Schmidt EW. Natural combinatorial peptide libraries in cyanobacterial symbionts of marine ascidians. Nature Chemical Biology. 2: 729-35. PMID 17086177 DOI: 10.1038/Nchembio829  0.639
2006 Sudek S, Haygood MG, Youssef DT, Schmidt EW. Structure of trichamide, a cyclic peptide from the bloom-forming cyanobacterium Trichodesmium erythraeum, predicted from the genome sequence. Applied and Environmental Microbiology. 72: 4382-7. PMID 16751554 DOI: 10.1128/Aem.00380-06  0.652
2005 Schmidt EW, Nelson JT, Rasko DA, Sudek S, Eisen JA, Haygood MG, Ravel J. Patellamide A and C biosynthesis by a microcin-like pathway in Prochloron didemni, the cyanobacterial symbiont of Lissoclinum patella. Proceedings of the National Academy of Sciences of the United States of America. 102: 7315-20. PMID 15883371 DOI: 10.1073/Pnas.0501424102  0.654
2004 Hildebrand M, Waggoner LE, Liu H, Sudek S, Allen S, Anderson C, Sherman DH, Haygood M. bryA: an unusual modular polyketide synthase gene from the uncultivated bacterial symbiont of the marine bryozoan Bugula neritina. Chemistry & Biology. 11: 1543-52. PMID 15556005 DOI: 10.1016/J.Chembiol.2004.08.018  0.579
2004 Schmidt EW, Sudek S, Haygood MG. Genetic evidence supports secondary metabolic diversity in Prochloron spp., the cyanobacterial symbiont of a tropical ascidian. Journal of Natural Products. 67: 1341-5. PMID 15332852 DOI: 10.1021/Np049948N  0.637
Low-probability matches (unlikely to be authored by this person)
2003 Perović S, Schröder HC, Sudek S, Grebenjuk VA, Batel R, Stifanić M, Müller IM, Müller WE. Expression of one sponge Iroquois homeobox gene in primmorphs from Suberites domuncula during canal formation. Evolution & Development. 5: 240-50. PMID 12752763 DOI: 10.1046/j.1525-142X.2003.03023.x  0.298
2015 Simmons MP, Bachy C, Sudek S, van Baren MJ, Sudek L, Ares M, Worden AZ. Intron Invasions Trace Algal Speciation and Reveal Nearly Identical Arctic and Antarctic Micromonas Populations. Molecular Biology and Evolution. 32: 2219-35. PMID 25998521 DOI: 10.1093/Molbev/Msv122  0.295
2018 Bachy C, Charlesworth CJ, Chan AM, Finke JF, Wong CH, Wei CL, Sudek S, Coleman ML, Suttle CA, Worden AZ. Transcriptional responses of the marine green alga Micromonas pusilla and an infecting prasinovirus under different phosphate conditions. Environmental Microbiology. PMID 29749714 DOI: 10.1111/1462-2920.14273  0.272
2020 Choi CJ, Jimenez V, Needham DM, Poirier C, Bachy C, Alexander H, Wilken S, Chavez FP, Sudek S, Giovannoni SJ, Worden AZ. Seasonal and Geographical Transitions in Eukaryotic Phytoplankton Community Structure in the Atlantic and Pacific Oceans. Frontiers in Microbiology. 11: 542372. PMID 33101224 DOI: 10.3389/fmicb.2020.542372  0.272
2019 Needham DM, Yoshizawa S, Hosaka T, Poirier C, Choi CJ, Hehenberger E, Irwin NAT, Wilken S, Yung CM, Bachy C, Kurihara R, Nakajima Y, Kojima K, Kimura-Someya T, Leonard G, ... ... Sudek S, et al. A distinct lineage of giant viruses brings a rhodopsin photosystem to unicellular marine predators. Proceedings of the National Academy of Sciences of the United States of America. PMID 31548428 DOI: 10.1073/Pnas.1907517116  0.272
2014 Duanmu D, Bachy C, Sudek S, Wong CH, Jiménez V, Rockwell NC, Martin SS, Ngan CY, Reistetter EN, van Baren MJ, Price DC, Wei CL, Reyes-Prieto A, Lagarias JC, Worden AZ. Marine algae and land plants share conserved phytochrome signaling systems. Proceedings of the National Academy of Sciences of the United States of America. 111: 15827-32. PMID 25267653 DOI: 10.1073/Pnas.1416751111  0.258
2011 Kim E, Harrison JW, Sudek S, Jones MD, Wilcox HM, Richards TA, Worden AZ, Archibald JM. Newly identified and diverse plastid-bearing branch on the eukaryotic tree of life. Proceedings of the National Academy of Sciences of the United States of America. 108: 1496-500. PMID 21205890 DOI: 10.1073/Pnas.1013337108  0.25
2016 Simmons MP, Sudek S, Monier A, Limardo AJ, Jimenez V, Perle CR, Elrod VA, Pennington JT, Worden AZ. Abundance and biogeography of picoprasinophyte ecotypes and other phytoplankton in the Eastern North Pacific Ocean. Applied and Environmental Microbiology. PMID 26729718 DOI: 10.1128/AEM.02730-15  0.235
2009 Das D, Kozbial P, Axelrod HL, Miller MD, McMullan D, Krishna SS, Abdubek P, Acosta C, Astakhova T, Burra P, Carlton D, Chen C, Chiu HJ, Clayton T, Deller MC, ... ... Sudek S, et al. Crystal structure of a novel Sm-like protein of putative cyanophage origin at 2.60 A resolution. Proteins. 75: 296-307. PMID 19173316 DOI: 10.1002/Prot.22360  0.204
2017 Gutowska MA, Shome B, Sudek S, McRose DL, Hamilton M, Giovannoni SJ, Begley TP, Worden AZ. Globally Important Haptophyte Algae Use Exogenous Pyrimidine Compounds More Efficiently than Thiamin. Mbio. 8. PMID 29018119 DOI: 10.1128/Mbio.01459-17  0.198
2009 Xu Q, Sudek S, McMullan D, Miller MD, Geierstanger B, Jones DH, Krishna SS, Spraggon G, Bursalay B, Abdubek P, Acosta C, Ambing E, Astakhova T, Axelrod HL, Carlton D, et al. Structural basis of murein peptide specificity of a gamma-D-glutamyl-l-diamino acid endopeptidase. Structure (London, England : 1993). 17: 303-13. PMID 19217401 DOI: 10.1016/J.Str.2008.12.008  0.197
2016 Gregory AC, Solonenko SA, Ignacio-Espinoza JC, LaButti K, Copeland A, Sudek S, Maitland A, Chittick L, Dos Santos F, Weitz JS, Worden AZ, Woyke T, Sullivan MB. Genomic differentiation among wild cyanophages despite widespread horizontal gene transfer. Bmc Genomics. 17: 930. PMID 27852226 DOI: 10.1186/S12864-016-3286-X  0.196
2014 Sudek S, Everroad RC, Gehman AL, Smith JM, Poirier CL, Chavez FP, Worden AZ. Cyanobacterial distributions along a physico-chemical gradient in the Northeastern Pacific Ocean. Environmental Microbiology. PMID 25522910 DOI: 10.1111/1462-2920.12742  0.194
2020 Rodríguez-Martínez R, Leonard G, Milner DS, Sudek S, Conway M, Moore K, Hudson T, Mahé F, Keeling PJ, Santoro AE, Worden AZ, Richards TA. Controlled sampling of ribosomally active protistan diversity in sediment-surface layers identifies putative players in the marine carbon sink. The Isme Journal. PMID 31919469 DOI: 10.1038/S41396-019-0581-Y  0.168
2018 Joo S, Wang MH, Lui G, Lee J, Barnas A, Kim E, Sudek S, Worden AZ, Lee JH. Common ancestry of heterodimerizing TALE homeobox transcription factors across Metazoa and Archaeplastida. Bmc Biology. 16: 136. PMID 30396330 DOI: 10.1186/S12915-018-0605-5  0.155
2016 van Baren MJ, Bachy C, Reistetter EN, Purvine SO, Grimwood J, Sudek S, Yu H, Poirier C, Deerinck TJ, Kuo A, Grigoriev IV, Wong CH, Smith RD, Callister SJ, Wei CL, et al. Evidence-based green algal genomics reveals marine diversity and ancestral characteristics of land plants. Bmc Genomics. 17: 267. PMID 27029936 DOI: 10.1186/S12864-016-2585-6  0.147
2002 Schröder HC, Sudek S, Caro S, Rosa S, Perovic S, Steffen R, Müller IM, Müller WE. Synthesis of the neurotoxin quinolinic acid in apoptotic tissue from Suberites domuncula: cell biological, molecular biological, and chemical analyses. Marine Biotechnology (New York, N.Y.). 4: 546-58. PMID 14961229 DOI: 10.1007/s10126-002-0028-7  0.116
2011 Demir-Hilton E, Sudek S, Cuvelier ML, Gentemann CL, Zehr JP, Worden AZ. Global distribution patterns of distinct clades of the photosynthetic picoeukaryote Ostreococcus. The Isme Journal. 5: 1095-107. PMID 21289652 DOI: 10.1038/Ismej.2010.209  0.112
2015 Ribalet F, Swalwell J, Clayton S, Jiménez V, Sudek S, Lin Y, Johnson ZI, Worden AZ, Armbrust EV. Light-driven synchrony of Prochlorococcus growth and mortality in the subtropical Pacific gyre. Proceedings of the National Academy of Sciences of the United States of America. PMID 26080407 DOI: 10.1073/Pnas.1424279112  0.102
2023 Barry JP, Litvin SY, DeVogelaere A, Caress DW, Lovera CF, Kahn AS, Burton EJ, King C, Paduan JB, Wheat CG, Girard F, Sudek S, Hartwell AM, Sherman AD, McGill PR, et al. Abyssal hydrothermal springs-Cryptic incubators for brooding octopus. Science Advances. 9: eadg3247. PMID 37611094 DOI: 10.1126/sciadv.adg3247  0.083
2017 Limardo AJ, Sudek S, Choi CJ, Poirier C, Rii YM, Blum M, Roth R, Goodenough U, Church MJ, Worden AZ. Quantitative biogeography of picoprasinophytes establishes ecotype distributions and significant contributions to marine phytoplankton. Environmental Microbiology. PMID 28585420 DOI: 10.1111/1462-2920.13812  0.071
2020 Joo S, Wang MH, Lui G, Lee J, Barnas A, Kim E, Sudek S, Worden AZ, Lee JH. Correction to: Common ancestry of heterodimerizing TALE homeobox transcription factors across Metazoa and Archaeplastida. Bmc Biology. 18: 4. PMID 31918709 DOI: 10.1186/S12915-020-0737-2  0.062
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