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Somdeb Mitra, Ph.D. - Publications

Affiliations: 
2009 Yeshiva University, New York, NY, United States 
Area:
Biochemistry, General Biophysics
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14 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Mitra S, Demeler B. Probing RNA-Protein Interactions and RNA Compaction by Sedimentation Velocity Analytical Ultracentrifugation. Methods in Molecular Biology (Clifton, N.J.). 2113: 281-317. PMID 32006321 DOI: 10.1007/978-1-0716-0278-2_19  0.501
2017 Ramachandran M, Mitra S, Gonzalez RL. Abstract A17: Probing a translational switch involved in tumor angiogenesis Cancer Research. 77. DOI: 10.1158/1538-7445.Transcontrol16-A17  0.347
2015 Ruehle M, Zhang H, Sheridan RM, Mitra S, Chen Y, Gonzalez RL, Cooperman BS, Kieft JS. A dynamic RNA loop in an IRES affects multiple steps of elongation factor-mediated translation initiation. Elife. 4. PMID 26523395 DOI: 10.7554/Elife.08146  0.53
2015 Ruehle MD, Zhang H, Sheridan RM, Mitra S, Chen Y, Gonzalez RL, Cooperman BS, Kieft JS. Author response: A dynamic RNA loop in an IRES affects multiple steps of elongation factor-mediated translation initiation Elife. DOI: 10.7554/Elife.08146.022  0.444
2014 Mitra S. Detecting RNA tertiary folding by sedimentation velocity analytical ultracentrifugation. Methods in Molecular Biology (Clifton, N.J.). 1086: 265-88. PMID 24136610 DOI: 10.1007/978-1-62703-667-2_16  0.456
2013 Chen C, Mitra S, Jonikas M, Martin J, Brenowitz M, Laederach A. Understanding the role of three-dimensional topology in determining the folding intermediates of group I introns. Biophysical Journal. 104: 1326-37. PMID 23528092 DOI: 10.1016/J.Bpj.2013.02.007  0.659
2012 Patel VL, Mitra S, Harris R, Buxbaum AR, Lionnet T, Brenowitz M, Girvin M, Levy M, Almo SC, Singer RH, Chao JA. Spatial arrangement of an RNA zipcode identifies mRNAs under post-transcriptional control. Genes & Development. 26: 43-53. PMID 22215810 DOI: 10.1101/Gad.177428.111  0.611
2011 Mitra S, Laederach A, Golden BL, Altman RB, Brenowitz M. RNA molecules with conserved catalytic cores but variable peripheries fold along unique energetically optimized pathways. Rna (New York, N.Y.). 17: 1589-603. PMID 21712400 DOI: 10.1261/Rna.2694811  0.644
2009 Mitra S. Using analytical ultracentrifugation (AUC) to measure global conformational changes accompanying equilibrium tertiary folding of RNA molecules. Methods in Enzymology. 469: 209-36. PMID 20946791 DOI: 10.1016/S0076-6879(09)69010-8  0.496
2009 Shcherbakova I, Mitra S. Hydroxyl-radical footprinting to probe equilibrium changes in RNA tertiary structure. Methods in Enzymology. 468: 31-46. PMID 20946763 DOI: 10.1016/S0076-6879(09)68002-2  0.415
2008 Shcherbakova I, Mitra S, Laederach A, Brenowitz M. Energy barriers, pathways, and dynamics during folding of large, multidomain RNAs. Current Opinion in Chemical Biology. 12: 655-66. PMID 18926923 DOI: 10.1016/J.Cbpa.2008.09.017  0.645
2008 Mitra S, Shcherbakova IV, Altman RB, Brenowitz M, Laederach A. High-throughput single-nucleotide structural mapping by capillary automated footprinting analysis. Nucleic Acids Research. 36: e63. PMID 18477638 DOI: 10.1093/Nar/Gkn267  0.588
2008 Shcherbakova I, Mitra S, Beer RH, Brenowitz M. Following molecular transitions with single residue spatial and millisecond time resolution. Methods in Cell Biology. 84: 589-615. PMID 17964944 DOI: 10.1016/S0091-679X(07)84019-2  0.634
2006 Shcherbakova I, Mitra S, Beer RH, Brenowitz M. Fast Fenton footprinting: a laboratory-based method for the time-resolved analysis of DNA, RNA and proteins. Nucleic Acids Research. 34: e48. PMID 16582097 DOI: 10.1093/Nar/Gkl055  0.626
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