| Year |
Citation |
Score |
| 2020 |
Rodriguez-Romaguera J, Namboodiri VMK, Basiri ML, Stamatakis AM, Stuber GD. Developments from Bulk Optogenetics to Single-Cell Strategies to Dissect the Neural Circuits that Underlie Aberrant Motivational States. Cold Spring Harbor Perspectives in Medicine. PMID 32513671 DOI: 10.1101/Cshperspect.A039792 |
0.759 |
|
| 2016 |
Berrios J, Stamatakis AM, Kantak PA, McElligott ZA, Judson MC, Aita M, Rougie M, Stuber GD, Philpot BD. Loss of UBE3A from TH-expressing neurons suppresses GABA co-release and enhances VTA-NAc optical self-stimulation. Nature Communications. 7: 10702. PMID 26869263 DOI: 10.1038/Ncomms10702 |
0.609 |
|
| 2016 |
Stamatakis AM, Van Swieten M, Basiri ML, Blair GA, Kantak P, Stuber GD. Lateral Hypothalamic Area Glutamatergic Neurons and Their Projections to the Lateral Habenula Regulate Feeding and Reward. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 36: 302-11. PMID 26758824 DOI: 10.1523/JNEUROSCI.1202-15.2016 |
0.771 |
|
| 2015 |
Jennings JH, Ung RL, Resendez SL, Stamatakis AM, Taylor JG, Huang J, Veleta K, Kantak PA, Aita M, Shilling-Scrivo K, Ramakrishnan C, Deisseroth K, Otte S, Stuber GD. Visualizing hypothalamic network dynamics for appetitive and consummatory behaviors. Cell. 160: 516-27. PMID 25635459 DOI: 10.1016/J.Cell.2014.12.026 |
0.754 |
|
| 2015 |
Stuber GD, Stamatakis AM, Kantak PA. Considerations when using cre-driver rodent lines for studying ventral tegmental area circuitry. Neuron. 85: 439-45. PMID 25611514 DOI: 10.1016/j.neuron.2014.12.034 |
0.603 |
|
| 2014 |
Sparta DR, Smithuis J, Stamatakis AM, Jennings JH, Kantak PA, Ung RL, Stuber GD. Inhibition of projections from the basolateral amygdala to the entorhinal cortex disrupts the acquisition of contextual fear. Frontiers in Behavioral Neuroscience. 8: 129. PMID 24834031 DOI: 10.3389/Fnbeh.2014.00129 |
0.75 |
|
| 2014 |
Stamatakis AM, Sparta DR, Jennings JH, McElligott ZA, Decot H, Stuber GD. Amygdala and bed nucleus of the stria terminalis circuitry: Implications for addiction-related behaviors. Neuropharmacology. 76: 320-8. PMID 23752096 DOI: 10.1016/J.Neuropharm.2013.05.046 |
0.696 |
|
| 2013 |
Stamatakis AM, Jennings JH, Ung RL, Blair GA, Weinberg RJ, Neve RL, Boyce F, Mattis J, Ramakrishnan C, Deisseroth K, Stuber GD. A unique population of ventral tegmental area neurons inhibits the lateral habenula to promote reward. Neuron. 80: 1039-53. PMID 24267654 DOI: 10.1016/J.Neuron.2013.08.023 |
0.76 |
|
| 2013 |
Jennings JH, Rizzi G, Stamatakis AM, Ung RL, Stuber GD. The inhibitory circuit architecture of the lateral hypothalamus orchestrates feeding. Science (New York, N.Y.). 341: 1517-21. PMID 24072922 DOI: 10.1126/Science.1241812 |
0.76 |
|
| 2013 |
Jennings JH, Sparta DR, Stamatakis AM, Ung RL, Pleil KE, Kash TL, Stuber GD. Distinct extended amygdala circuits for divergent motivational states. Nature. 496: 224-8. PMID 23515155 DOI: 10.1038/Nature12041 |
0.779 |
|
| 2013 |
Robinson JE, Chen M, Stamatakis AM, Krouse MC, Howard EC, Faccidomo S, Hodge CW, Fish EW, Malanga CJ. Levetiracetam has opposite effects on alcohol- and cocaine-related behaviors in C57BL/6J mice. Neuropsychopharmacology : Official Publication of the American College of Neuropsychopharmacology. 38: 1322-33. PMID 23353709 DOI: 10.1038/Npp.2013.30 |
0.727 |
|
| 2012 |
Stamatakis AM, Stuber GD. Optogenetic strategies to dissect the neural circuits that underlie reward and addiction. Cold Spring Harbor Perspectives in Medicine. 2. PMID 23043156 DOI: 10.1101/cshperspect.a011924 |
0.644 |
|
| 2012 |
Stamatakis AM, Stuber GD. Activation of lateral habenula inputs to the ventral midbrain promotes behavioral avoidance. Nature Neuroscience. 15: 1105-7. PMID 22729176 DOI: 10.1038/nn.3145 |
0.668 |
|
| 2012 |
Li C, Pleil KE, Stamatakis AM, Busan S, Vong L, Lowell BB, Stuber GD, Kash TL. Presynaptic inhibition of gamma-aminobutyric acid release in the bed nucleus of the stria terminalis by kappa opioid receptor signaling. Biological Psychiatry. 71: 725-32. PMID 22225848 DOI: 10.1016/J.Biopsych.2011.11.015 |
0.588 |
|
| 2012 |
Sparta DR, Stamatakis AM, Phillips JL, Hovelsø N, van Zessen R, Stuber GD. Construction of implantable optical fibers for long-term optogenetic manipulation of neural circuits. Nature Protocols. 7: 12-23. PMID 22157972 DOI: 10.1038/nprot.2011.413 |
0.735 |
|
| 2011 |
Stuber GD, Sparta DR, Stamatakis AM, van Leeuwen WA, Hardjoprajitno JE, Cho S, Tye KM, Kempadoo KA, Zhang F, Deisseroth K, Bonci A. Excitatory transmission from the amygdala to nucleus accumbens facilitates reward seeking. Nature. 475: 377-80. PMID 21716290 DOI: 10.1038/Nature10194 |
0.77 |
|
| 2011 |
Saddoris MP, Stamatakis A, Carelli RM. Neural correlates of Pavlovian-to-instrumental transfer in the nucleus accumbens shell are selectively potentiated following cocaine self-administration. The European Journal of Neuroscience. 33: 2274-87. PMID 21507084 DOI: 10.1111/J.1460-9568.2011.07683.X |
0.658 |
|
| Low-probability matches (unlikely to be authored by this person) |
| 2015 |
Stamatakis A, Kalpachidou T, Raftogianni A, Zografou E, Tzanou A, Pondiki S, Stylianopoulou F. Rat dams exposed repeatedly to a daily brief separation from the pups exhibit increased maternal behavior, decreased anxiety and altered levels of receptors for estrogens (ERα, ERβ), oxytocin and serotonin (5-HT1A) in their brain. Psychoneuroendocrinology. 52: 212-28. PMID 25486578 DOI: 10.1016/J.Psyneuen.2014.11.016 |
0.285 |
|
| 2018 |
Stamatakis AM, Schachter MJ, Gulati S, Zitelli KT, Malanowski S, Tajik A, Fritz C, Trulson M, Otte SL. Simultaneous Optogenetics and Cellular Resolution Calcium Imaging During Active Behavior Using a Miniaturized Microscope. Frontiers in Neuroscience. 12: 496. PMID 30087590 DOI: 10.3389/fnins.2018.00496 |
0.28 |
|
| 2008 |
Garoflos E, Stamatakis A, Rafrogianni A, Pondiki S, Stylianopoulou F. Neonatal handling on the first postnatal day leads to increased maternal behavior and fos levels in the brain of the newborn rat. Developmental Psychobiology. 50: 704-13. PMID 18688818 DOI: 10.1002/dev.20332 |
0.245 |
|
| 2014 |
Stamatakis A, Diamantopoulou A, Panagiotaropoulos T, Raftogianni A, Stylianopoulou F. A novel model of early experiences involving neonatal learning of a T-maze using maternal contact as a reward or its denial as an event of mild emotional adversity. Developmental Psychobiology. 56: 1651-60. PMID 25231083 DOI: 10.1002/Dev.21248 |
0.233 |
|
| 2015 |
Stamatakis A, Manatos V, Kalpachidou T, Stylianopoulou F. Exposure to a mildly aversive early life experience leads to prefrontal cortex deficits in the rat. Brain Structure & Function. PMID 26642796 DOI: 10.1007/s00429-015-1154-0 |
0.232 |
|
| 2014 |
Raftogianni A, Stamatakis A, Diamantopoulou A, Kollia AM, Stylianopoulou F. Effects of an early experience of reward through maternal contact or its denial on the dopaminergic system of the rat brain. Neuroscience. 269: 11-20. PMID 24680882 DOI: 10.1016/J.Neuroscience.2014.03.035 |
0.22 |
|
| 2016 |
Manatos V, Stylianopoulou F, Stamatakis A. The levels of the GluN2A NMDA receptor subunit are modified in both the neonatal and adult rat brain by an early experience involving denial of maternal contact. Neuroscience Letters. 612: 98-103. PMID 26679226 DOI: 10.1016/j.neulet.2015.12.005 |
0.215 |
|
| 2013 |
Stamatakis A, Diamantopoulou A, Panagiotaropoulos T, Raftogianni A, Stylianopoulou F. Effects of an Early Experience Involving Training in a T-Maze Under either Denial or Receipt of Expected Reward through Maternal Contact. Frontiers in Endocrinology. 4: 178. PMID 24298269 DOI: 10.3389/Fendo.2013.00178 |
0.213 |
|
| 2014 |
Katsouli S, Stamatakis A, Giompres P, Kouvelas ED, Stylianopoulou F, Mitsacos A. Sexually dimorphic long-term effects of an early life experience on AMPA receptor subunit expression in rat brain. Neuroscience. 257: 49-64. PMID 24211798 DOI: 10.1016/j.neuroscience.2013.10.073 |
0.202 |
|
| 2012 |
Diamantopoulou A, Raftogianni A, Stamatakis A, Alikaridis F, Oitzl MS, Stylianopoulou F. Denial of reward in the neonate shapes sociability and serotonergic activity in the adult rat. Plos One. 7: e33793. PMID 22479443 DOI: 10.1371/Journal.Pone.0033793 |
0.199 |
|
| 2013 |
Diamantopoulou A, Raftogianni A, Stamatakis A, Tzanoulinou S, Oitzl MS, Stylianopoulou F. Denial or receipt of expected reward through maternal contact during the neonatal period differentially affect the development of the rat amygdala and program its function in adulthood in a sex-dimorphic way. Psychoneuroendocrinology. 38: 1757-71. PMID 23490071 DOI: 10.1016/J.Psyneuen.2013.02.012 |
0.193 |
|
| 2009 |
Panagiotaropoulos T, Diamantopoulou A, Stamatakis A, Dimitropoulou M, Stylianopoulou F. Learning of a T-maze by rat pups when contact with the mother is either permitted or denied. Neurobiology of Learning and Memory. 91: 2-12. PMID 18840534 DOI: 10.1016/J.Nlm.2008.09.007 |
0.191 |
|
| 2009 |
Kiosterakis G, Stamatakis A, Diamantopoulou A, Fameli M, Stylianopoulou F. Long-term effects of neonatal handling on mu-opioid receptor levels in the brain of the offspring. Developmental Psychobiology. 51: 439-49. PMID 19507200 DOI: 10.1002/Dev.20383 |
0.189 |
|
| 2008 |
Savvaki M, Panagiotaropoulos T, Stamatakis A, Sargiannidou I, Karatzioula P, Watanabe K, Stylianopoulou F, Karagogeos D, Kleopa KA. Impairment of learning and memory in TAG-1 deficient mice associated with shorter CNS internodes and disrupted juxtaparanodes. Molecular and Cellular Neurosciences. 39: 478-90. PMID 18760366 DOI: 10.1016/J.Mcn.2008.07.025 |
0.174 |
|
| 2012 |
Fragkouli A, Papatheodoropoulos C, Georgopoulos S, Stamatakis A, Stylianopoulou F, Tsilibary EC, Tzinia AK. Enhanced neuronal plasticity and elevated endogenous sAPPα levels in mice over-expressing MMP9. Journal of Neurochemistry. 121: 239-51. PMID 22192143 DOI: 10.1111/J.1471-4159.2011.07637.X |
0.174 |
|
| 2021 |
Stamatakis AM, Resendez SL, Chen KS, Favero M, Liang-Guallpa J, Nassi JJ, Neufeld SQ, Visscher KM, Ghosh KK. Miniature Microscopes for Manipulating and Recording in vivo Brain Activity. Microscopy (Oxford, England). PMID 34283242 DOI: 10.1093/jmicro/dfab028 |
0.159 |
|
| 2013 |
Diamantopoulou A, Raftogianni A, Stamatakis A, Oitzl MS, Stylianopoulou F. Effects of denial of reward through maternal contact in the neonatal period on adult hypothalamic-pituitary-adrenal axis function in the rat. Psychoneuroendocrinology. 38: 830-41. PMID 23022552 DOI: 10.1016/J.Psyneuen.2012.09.007 |
0.159 |
|
| 2012 |
Raftogianni A, Diamantopoulou A, Alikaridis F, Stamatakis A, Stylianopoulou F. Effects of interaction of an early experience of reward through maternal contact or its denial with social stress during adolescence on the serotonergic system and the stress responsiveness of adult female rats. Neuroscience. 209: 84-96. PMID 22381469 DOI: 10.1016/J.Neuroscience.2012.01.032 |
0.134 |
|
| 2012 |
Raftogianni A, Stamatakis A, Papadopoulou A, Vougas K, Anagnostopoulos AK, Stylianopoulou F, Tsangaris GT. Effects of an early experience of reward through maternal contact or its denial on laterality of protein expression in the developing rat hippocampus. Plos One. 7: e48337. PMID 23118990 DOI: 10.1371/Journal.Pone.0048337 |
0.132 |
|
| 2010 |
Savvaki M, Theodorakis K, Zoupi L, Stamatakis A, Tivodar S, Kyriacou K, Stylianopoulou F, Karagogeos D. The expression of TAG-1 in glial cells is sufficient for the formation of the juxtaparanodal complex and the phenotypic rescue of tag-1 homozygous mutants in the CNS. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 30: 13943-54. PMID 20962216 DOI: 10.1523/Jneurosci.2574-10.2010 |
0.13 |
|
| 2013 |
Miltiadous P, Kouroupi G, Stamatakis A, Koutsoudaki PN, Matsas R, Stylianopoulou F. Subventricular zone-derived neural stem cell grafts protect against hippocampal degeneration and restore cognitive function in the mouse following intrahippocampal kainic acid administration. Stem Cells Translational Medicine. 2: 185-98. PMID 23417642 DOI: 10.5966/sctm.2012-0074 |
0.13 |
|
| 2009 |
Stamatakis A, Toutountzi E, Fragioudaki K, Kouvelas ED, Stylianopoulou F, Mitsacos A. Selective effects of neonatal handling on rat brain N-methyl-D-aspartate receptors. Neuroscience. 164: 1457-67. PMID 19778590 DOI: 10.1016/j.neuroscience.2009.09.032 |
0.123 |
|
| 2011 |
Diamantopoulou A, Stamatakis A, Panagiotaropoulos T, Stylianopoulou F. Reward or its denial during the neonatal period affects adult spatial memory and hippocampal phosphorylated cAMP response element-binding protein levels of both the neonatal and adult rat. Neuroscience. 181: 89-99. PMID 21382451 DOI: 10.1016/J.Neuroscience.2011.03.002 |
0.121 |
|
| 2012 |
Kouka A, Stamatakis A. Mood disorders related to alterations in critically patients mood disorders related to alterations in the levels of interleukin 6 in critically ill patients Nosileftiki. 51: 261-268. |
0.121 |
|
| 2015 |
Koutsoudaki PN, Papastefanaki F, Stamatakis A, Kouroupi G, Xingi E, Stylianopoulou F, Matsas R. Neural stem/progenitor cells differentiate into oligodendrocytes, reduce inflammation, and ameliorate learning deficits after transplantation in a mouse model of traumatic brain injury. Glia. PMID 26712314 DOI: 10.1002/glia.22959 |
0.118 |
|
| 2009 |
Hejnol A, Obst M, Stamatakis A, Ott M, Rouse GW, Edgecombe GD, Martinez P, Baguñà J, Bailly X, Jondelius U, Wiens M, Müller WE, Seaver E, Wheeler WC, Martindale MQ, et al. Assessing the root of bilaterian animals with scalable phylogenomic methods. Proceedings. Biological Sciences / the Royal Society. 276: 4261-70. PMID 19759036 DOI: 10.1098/Rspb.2009.0896 |
0.102 |
|
| 2012 |
Pavlidis P, Jensen JD, Stephan W, Stamatakis A. A critical assessment of storytelling: gene ontology categories and the importance of validating genomic scans. Molecular Biology and Evolution. 29: 3237-48. PMID 22617950 DOI: 10.1093/Molbev/Mss136 |
0.102 |
|
| 2011 |
Miltiadous P, Stamatakis A, Koutsoudaki PN, Tiniakos DG, Stylianopoulou F. IGF-I ameliorates hippocampal neurodegeneration and protects against cognitive deficits in an animal model of temporal lobe epilepsy. Experimental Neurology. 231: 223-35. PMID 21756906 DOI: 10.1016/j.expneurol.2011.06.014 |
0.097 |
|
| 2010 |
Miltiadous P, Stamatakis A, Stylianopoulou F. Neuroprotective effects of IGF-I following kainic acid-induced hippocampal degeneration in the rat. Cellular and Molecular Neurobiology. 30: 347-60. PMID 19777341 DOI: 10.1007/s10571-009-9457-4 |
0.097 |
|
| 2011 |
Goff SA, Vaughn M, McKay S, Lyons E, Stapleton AE, Gessler D, Matasci N, Wang L, Hanlon M, Lenards A, Muir A, Merchant N, Lowry S, Mock S, Helmke M, ... ... Stamatakis A, et al. The iPlant Collaborative: Cyberinfrastructure for Plant Biology. Frontiers in Plant Science. 2: 34. PMID 22645531 DOI: 10.3389/Fpls.2011.00034 |
0.091 |
|
| 2011 |
Ntzouni MP, Stamatakis A, Stylianopoulou F, Margaritis LH. Short-term memory in mice is affected by mobile phone radiation. Pathophysiology : the Official Journal of the International Society For Pathophysiology / Isp. 18: 193-9. PMID 21112192 DOI: 10.1016/j.pathophys.2010.11.001 |
0.086 |
|
| 2010 |
Fragopoulou AF, Miltiadous P, Stamatakis A, Stylianopoulou F, Koussoulakos SL, Margaritis LH. Whole body exposure with GSM 900MHz affects spatial memory in mice. Pathophysiology : the Official Journal of the International Society For Pathophysiology / Isp. 17: 179-87. PMID 19954937 DOI: 10.1016/j.pathophys.2009.11.002 |
0.083 |
|
| 2009 |
Alachiotis N, Stamatakis A, Sotiriades E, Dollas A. A reconfigurable architecture for the phylogenetic likelihood function Fpl 09: 19th International Conference On Field Programmable Logic and Applications. 674-678. DOI: 10.1109/FPL.2009.5272341 |
0.082 |
|
| 2012 |
Matsen FA, Hoffman NG, Gallagher A, Stamatakis A. A format for phylogenetic placements. Plos One. 7: e31009. PMID 22383988 DOI: 10.1371/Journal.Pone.0031009 |
0.081 |
|
| 2010 |
Berger SA, Stamatakis A. Assessment of barrier implementations for fine-grain parallel regions on current multi-core architectures 2010 Ieee International Conference On Cluster Computing Workshops and Posters, Cluster Workshops 2010. DOI: 10.1109/CLUSTERWKSP.2010.5613080 |
0.075 |
|
| 2011 |
Siarkou VI, Stamatakis A, Kappas I, Hadweh P, Laroucau K. Evolutionary relationships among Chlamydophila abortus variant strains inferred by rRNA secondary structure-based phylogeny. Plos One. 6: e19813. PMID 21629695 DOI: 10.1371/journal.pone.0019813 |
0.072 |
|
| 2009 |
Alachiotis N, Sotiriades E, Dollas A, Stamatakis A. Exploring FPGAs for accelerating the phylogenetic likelihood function Ipdps 2009 - Proceedings of the 2009 Ieee International Parallel and Distributed Processing Symposium. DOI: 10.1109/IPDPS.2009.5160929 |
0.067 |
|
| 2011 |
Lücking R, Hodkinson BP, Stamatakis A, Cartwright RA. PICS-Ord: unlimited coding of ambiguous regions by pairwise identity and cost scores ordination. Bmc Bioinformatics. 12: 10. PMID 21214904 DOI: 10.1186/1471-2105-12-10 |
0.067 |
|
| 2015 |
Kjer KM, Ware JL, Rust J, Wappler T, Lanfear R, Jermiin LS, Zhou X, Aspöck H, Aspöck U, Beutel RG, Blanke A, Donath A, Flouri T, Frandsen PB, Kapli P, ... ... Stamatakis A, et al. Response to Comment on "Phylogenomics resolves the timing and pattern of insect evolution". Science (New York, N.Y.). 349: 487. PMID 26228138 DOI: 10.1126/Science.Aaa7136 |
0.064 |
|
| 2014 |
Dell'Ampio E, Meusemann K, Szucsich NU, Peters RS, Meyer B, Borner J, Petersen M, Aberer AJ, Stamatakis A, Walzl MG, Minh BQ, von Haeseler A, Ebersberger I, Pass G, Misof B. Decisive data sets in phylogenomics: lessons from studies on the phylogenetic relationships of primarily wingless insects. Molecular Biology and Evolution. 31: 239-49. PMID 24140757 DOI: 10.1093/molbev/mst196 |
0.063 |
|
| 2014 |
Peters RS, Meusemann K, Petersen M, Mayer C, Wilbrandt J, Ziesmann T, Donath A, Kjer KM, Aspöck U, Aspöck H, Aberer A, Stamatakis A, Friedrich F, Hünefeld F, Niehuis O, et al. The evolutionary history of holometabolous insects inferred from transcriptome-based phylogeny and comprehensive morphological data. Bmc Evolutionary Biology. 14: 52. PMID 24646345 DOI: 10.1186/1471-2148-14-52 |
0.063 |
|
| 2011 |
Pattengale ND, Aberer AJ, Swenson KM, Stamatakis A, Moret BM. Uncovering hidden phylogenetic consensus in large data sets. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 8: 902-11. PMID 21301032 DOI: 10.1109/Tcbb.2011.28 |
0.061 |
|
| 2009 |
Kotronoulas G, Stamatakis A, Stylianopoulou F. Hormones, hormonal agents, and neuropeptides involved in the neuroendocrine regulation of sleep in humans. Hormones (Athens, Greece). 8: 232-48. PMID 20045796 DOI: 10.14310/Horm.2002.1239 |
0.06 |
|
| 2011 |
Smith SA, Beaulieu JM, Stamatakis A, Donoghue MJ. Understanding angiosperm diversification using small and large phylogenetic trees. American Journal of Botany. 98: 404-14. PMID 21613134 DOI: 10.3732/Ajb.1000481 |
0.06 |
|
| 2016 |
Stamatakis A, Mandalaki M, Tsoutsos T. Multi-criteria analysis for PV integrated in shading devices for Mediterranean region Energy and Buildings. 117: 128-137. DOI: 10.1016/j.enbuild.2016.02.007 |
0.06 |
|
| 2011 |
Gottschling M, Göker M, Stamatakis A, Bininda-Emonds OR, Nindl I, Bravo IG. Quantifying the phylodynamic forces driving papillomavirus evolution. Molecular Biology and Evolution. 28: 2101-13. PMID 21285031 DOI: 10.1093/Molbev/Msr030 |
0.06 |
|
| 2015 |
Flouri T, Izquierdo-Carrasco F, Darriba D, Aberer AJ, Nguyen LT, Minh BQ, Von Haeseler A, Stamatakis A. The phylogenetic likelihood library. Systematic Biology. 64: 356-62. PMID 25358969 DOI: 10.1093/sysbio/syu084 |
0.059 |
|
| 2013 |
Pavlidis P, Živkovic D, Stamatakis A, Alachiotis N. SweeD: likelihood-based detection of selective sweeps in thousands of genomes. Molecular Biology and Evolution. 30: 2224-34. PMID 23777627 DOI: 10.1093/molbev/mst112 |
0.058 |
|
| 2014 |
Misof B, Liu S, Meusemann K, Peters RS, Donath A, Mayer C, Frandsen PB, Ware J, Flouri T, Beutel RG, Niehuis O, Petersen M, Izquierdo-Carrasco F, Wappler T, Rust J, ... ... Stamatakis A, et al. Phylogenomics resolves the timing and pattern of insect evolution. Science (New York, N.Y.). 346: 763-7. PMID 25378627 DOI: 10.1126/Science.1257570 |
0.058 |
|
| 2015 |
Leaché AD, Banbury BL, Felsenstein J, de Oca AN, Stamatakis A. Short Tree, Long Tree, Right Tree, Wrong Tree: New Acquisition Bias Corrections for Inferring SNP Phylogenies. Systematic Biology. 64: 1032-47. PMID 26227865 DOI: 10.1093/sysbio/syv053 |
0.058 |
|
| 2010 |
Aberer AJ, Pattengale ND, Stamatakis A. Parallelized phylogenetic post-analysis on multi-core architectures Journal of Computational Science. 1: 107-114. DOI: 10.1016/J.Jocs.2010.03.006 |
0.057 |
|
| 2015 |
Sanderson MJ, McMahon MM, Stamatakis A, Zwickl DJ, Steel M. Impacts of terraces on phylogenetic inference. Systematic Biology. PMID 25999395 DOI: 10.1093/Sysbio/Syv024 |
0.057 |
|
| 2014 |
Dunthorn M, Otto J, Berger SA, Stamatakis A, Mahé F, Romac S, de Vargas C, Audic S, Stock A, Kauff F, Stoeck T. Placing environmental next-generation sequencing amplicons from microbial eukaryotes into a phylogenetic context. Molecular Biology and Evolution. 31: 993-1009. PMID 24473288 DOI: 10.1093/Molbev/Msu055 |
0.057 |
|
| 2010 |
Stark M, Berger SA, Stamatakis A, von Mering C. MLTreeMap--accurate Maximum Likelihood placement of environmental DNA sequences into taxonomic and functional reference phylogenies. Bmc Genomics. 11: 461. PMID 20687950 DOI: 10.1186/1471-2164-11-461 |
0.056 |
|
| 2011 |
Lee EK, Cibrian-Jaramillo A, Kolokotronis SO, Katari MS, Stamatakis A, Ott M, Chiu JC, Little DP, Stevenson DW, McCombie WR, Martienssen RA, Coruzzi G, Desalle R. A functional phylogenomic view of the seed plants. Plos Genetics. 7: e1002411. PMID 22194700 DOI: 10.1371/Journal.Pgen.1002411 |
0.055 |
|
| 2012 |
von Reumont BM, Jenner RA, Wills MA, Dell'ampio E, Pass G, Ebersberger I, Meyer B, Koenemann S, Iliffe TM, Stamatakis A, Niehuis O, Meusemann K, Misof B. Pancrustacean phylogeny in the light of new phylogenomic data: support for Remipedia as the possible sister group of Hexapoda. Molecular Biology and Evolution. 29: 1031-45. PMID 22049065 DOI: 10.1093/Molbev/Msr270 |
0.055 |
|
| 2008 |
Stamatakis A, Ott M. Efficient computation of the phylogenetic likelihood function on multi-gene alignments and multi-core architectures. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 363: 3977-84. PMID 18852107 DOI: 10.1098/rstb.2008.0163 |
0.055 |
|
| 2013 |
Aberer AJ, Stamatakis A. Rapid forward-in-time simulation at the chromosome and genome level. Bmc Bioinformatics. 14: 216. PMID 23834340 DOI: 10.1186/1471-2105-14-216 |
0.055 |
|
| 2009 |
Pratas F, Trancoso P, Stamatakis A, Sousa L. Fine-grain parallelism using multi-core, cell/BE, and GPU systems: Accelerating the phylogenetic likelihood function Proceedings of the International Conference On Parallel Processing. 9-17. DOI: 10.1109/ICPP.2009.30 |
0.054 |
|
| 2010 |
Pattengale ND, Alipour M, Bininda-Emonds OR, Moret BM, Stamatakis A. How many bootstrap replicates are necessary? Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 17: 337-54. PMID 20377449 DOI: 10.1089/Cmb.2009.0179 |
0.053 |
|
| 2015 |
Jarvis ED, Mirarab S, Aberer AJ, Li B, Houde P, Li C, Ho SY, Faircloth BC, Nabholz B, Howard JT, Suh A, Weber CC, da Fonseca RR, Alfaro-Núñez A, Narula N, ... ... Stamatakis A, et al. Phylogenomic analyses data of the avian phylogenomics project. Gigascience. 4: 4. PMID 25741440 DOI: 10.1186/S13742-014-0038-1 |
0.052 |
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| 2014 |
Aberer AJ, Kobert K, Stamatakis A. ExaBayes: massively parallel bayesian tree inference for the whole-genome era. Molecular Biology and Evolution. 31: 2553-6. PMID 25135941 DOI: 10.1093/molbev/msu236 |
0.05 |
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| 2008 |
Stamatakis A, Ott M. Exploiting fine-grained parallelism in the phylogenetic likelihood function with MPI, Pthreads, and OpenMP: A performance study Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 5265: 424-435. DOI: 10.1007/978-3-540-88436-1-36 |
0.049 |
|
| 2013 |
Fang H, Oates ME, Pethica RB, Greenwood JM, Sardar AJ, Rackham OJ, Donoghue PC, Stamatakis A, de Lima Morais DA, Gough J. A daily-updated tree of (sequenced) life as a reference for genome research. Scientific Reports. 3: 2015. PMID 23778980 DOI: 10.1038/Srep02015 |
0.048 |
|
| 2014 |
Izquierdo-Carrasco F, Cazes J, Smith SA, Stamatakis A. PUmPER: phylogenies updated perpetually. Bioinformatics (Oxford, England). 30: 1476-7. PMID 24478338 DOI: 10.1093/Bioinformatics/Btu053 |
0.047 |
|
| 2012 |
Alachiotis N, Stamatakis A, Pavlidis P. OmegaPlus: a scalable tool for rapid detection of selective sweeps in whole-genome datasets. Bioinformatics (Oxford, England). 28: 2274-5. PMID 22760304 DOI: 10.1093/bioinformatics/bts419 |
0.046 |
|
| 2010 |
Stamatakis A, Alachiotis N. Time and memory efficient likelihood-based tree searches on phylogenomic alignments with missing data. Bioinformatics (Oxford, England). 26: i132-9. PMID 20529898 DOI: 10.1093/bioinformatics/btq205 |
0.045 |
|
| 2011 |
Izquierdo-Carrasco F, Stamatakis A. Computing the phylogenetic likelihood function out-of-core Ieee International Symposium On Parallel and Distributed Processing Workshops and Phd Forum. 444-451. DOI: 10.1109/IPDPS.2011.185 |
0.042 |
|
| 2014 |
Kiefer M, Schmickl R, German DA, Mandáková T, Lysak MA, Al-Shehbaz IA, Franzke A, Mummenhoff K, Stamatakis A, Koch MA. BrassiBase: introduction to a novel knowledge database on Brassicaceae evolution. Plant & Cell Physiology. 55: e3. PMID 24259684 DOI: 10.1093/pcp/pct158 |
0.042 |
|
| 2014 |
Zhang J, Kobert K, Flouri T, Stamatakis A. PEAR: a fast and accurate Illumina Paired-End reAd mergeR. Bioinformatics (Oxford, England). 30: 614-20. PMID 24142950 DOI: 10.1093/bioinformatics/btt593 |
0.041 |
|
| 2014 |
Kozlov AM, Goll C, Stamatakis A. Efficient computation of the phylogenetic likelihood function on the Intel MIC architecture Proceedings of the International Parallel and Distributed Processing Symposium, Ipdps. 518-527. DOI: 10.1109/IPDPSW.2014.198 |
0.039 |
|
| 2010 |
Stamatakis A, Göker M, Grimm GW. Maximum Likelihood Analyses of 3,490 rbcL Sequences: Scalability of Comprehensive Inference versus Group-Specific Taxon Sampling. Evolutionary Bioinformatics Online. 6: 73-90. PMID 20535232 |
0.039 |
|
| 2011 |
Stamatakis A, Izquierdo-Carrasco F. Result verification, code verification and computation of support values in phylogenetics. Briefings in Bioinformatics. 12: 270-9. PMID 21257650 DOI: 10.1093/bib/bbq079 |
0.039 |
|
| 2013 |
Alachiotis N, Berger S, Flouri T, Pissis SP, Stamatakis A. libgapmis: extending short-read alignments. Bmc Bioinformatics. 14: S4. PMID 24564250 DOI: 10.1186/1471-2105-14-S11-S4 |
0.038 |
|
| 2014 |
Stamatakis A. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics (Oxford, England). 30: 1312-3. PMID 24451623 DOI: 10.1093/bioinformatics/btu033 |
0.036 |
|
| 2012 |
Berger SA, Alachiotis N, Stamatakis A. An optimized reconfigurable system for computing the phylogenetic likelihood function on DNA data Proceedings of the 2012 Ieee 26th International Parallel and Distributed Processing Symposium Workshops, Ipdpsw 2012. 352-359. DOI: 10.1109/IPDPSW.2012.43 |
0.036 |
|
| 2011 |
Alachiotis N, Stamatakis A. A vector-like reconfigurable floating-point unit for the logarithm International Journal of Reconfigurable Computing. 2011. DOI: 10.1155/2011/341510 |
0.036 |
|
| 2013 |
Fuller JC, Khoueiry P, Dinkel H, Forslund K, Stamatakis A, Barry J, Budd A, Soldatos TG, Linssen K, Rajput AM. Biggest challenges in bioinformatics. Embo Reports. 14: 302-4. PMID 23492829 DOI: 10.1038/embor.2013.34 |
0.036 |
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| 2013 |
Sunagawa S, Mende DR, Zeller G, Izquierdo-Carrasco F, Berger SA, Kultima JR, Coelho LP, Arumugam M, Tap J, Nielsen HB, Rasmussen S, Brunak S, Pedersen O, Guarner F, de Vos WM, ... ... Stamatakis A, et al. Metagenomic species profiling using universal phylogenetic marker genes. Nature Methods. 10: 1196-9. PMID 24141494 DOI: 10.1038/Nmeth.2693 |
0.035 |
|
| 2011 |
Berger SA, Stamatakis A. Aligning short reads to reference alignments and trees. Bioinformatics (Oxford, England). 27: 2068-75. PMID 21636595 DOI: 10.1093/bioinformatics/btr320 |
0.035 |
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| 2012 |
Liu K, Warnow TJ, Holder MT, Nelesen SM, Yu J, Stamatakis AP, Linder CR. SATe-II: very fast and accurate simultaneous estimation of multiple sequence alignments and phylogenetic trees. Systematic Biology. 61: 90-106. PMID 22139466 DOI: 10.1093/Sysbio/Syr095 |
0.034 |
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| 2012 |
Alachiotis N, Berger SA, Stamatakis A. A versatile UDP/IP based PC ↔ FPGA communication platform 2012 International Conference On Reconfigurable Computing and Fpgas, Reconfig 2012. DOI: 10.1109/ReConFig.2012.6416725 |
0.034 |
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| 2014 |
Pissis SP, Goll C, Pavlidis P, Stamatakis A. Accelerating string matching on MIC architecture for motif extraction Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 8385: 258-267. DOI: 10.1007/978-3-642-55195-6_24 |
0.033 |
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| 2015 |
Metodiev EM, D'Silva IM, Fandaros M, Gaisser M, Haciömero?lu S, Huang D, Huang KL, Patil A, Prodromou R, Semertzidis OA, Sharma D, Stamatakis AN, Orlov YF, Semertzidis YK. Analytical benchmarks for precision particle tracking in electric and magnetic rings Nuclear Instruments and Methods in Physics Research, Section a: Accelerators, Spectrometers, Detectors and Associated Equipment. 797: 311-318. DOI: 10.1016/J.Nima.2015.06.032 |
0.033 |
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| 2012 |
Pratas F, Trancoso P, Sousa L, Stamatakis A, Shi G, Kindratenko V. Fine-grain parallelism using multi-core, Cell/BE, and GPU systems Parallel Computing. 38: 365-390. DOI: 10.1016/j.parco.2011.08.002 |
0.033 |
|
| 2010 |
Stamatakis A, Komornik Z, Berger SA. Evolutionary placement of short sequence reads on multi-core architectures 2010 Acs/Ieee International Conference On Computer Systems and Applications, Aiccsa 2010. DOI: 10.1109/AICCSA.2010.5586973 |
0.033 |
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| 2014 |
Salichos L, Stamatakis A, Rokas A. Novel information theory-based measures for quantifying incongruence among phylogenetic trees. Molecular Biology and Evolution. 31: 1261-71. PMID 24509691 DOI: 10.1093/Molbev/Msu061 |
0.032 |
|
| 2011 |
Izquierdo-Carrasco F, Smith SA, Stamatakis A. Algorithms, data structures, and numerics for likelihood-based phylogenetic inference of huge trees. Bmc Bioinformatics. 12: 470. PMID 22165866 DOI: 10.1186/1471-2105-12-470 |
0.032 |
|
| 2010 |
Berger SA, Stamatakis A. Accuracy of morphology-based phylogenetic fossil placement under maximum likelihood 2010 Acs/Ieee International Conference On Computer Systems and Applications, Aiccsa 2010. DOI: 10.1109/AICCSA.2010.5586939 |
0.032 |
|
| 2010 |
Alachiotis N, Stamatakis A. A generic and versatile architecture for inference of evolutionary trees under maximum likelihood Conference Record - Asilomar Conference On Signals, Systems and Computers. 829-835. DOI: 10.1109/ACSSC.2010.5757682 |
0.031 |
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| 2014 |
Lanfear R, Calcott B, Kainer D, Mayer C, Stamatakis A. Selecting optimal partitioning schemes for phylogenomic datasets. Bmc Evolutionary Biology. 14: 82. PMID 24742000 DOI: 10.1186/1471-2148-14-82 |
0.03 |
|
| 2011 |
Berger SA, Krompass D, Stamatakis A. Performance, accuracy, and Web server for evolutionary placement of short sequence reads under maximum likelihood. Systematic Biology. 60: 291-302. PMID 21436105 DOI: 10.1093/sysbio/syr010 |
0.028 |
|
| 2013 |
Zhang J, Kapli P, Pavlidis P, Stamatakis A. A general species delimitation method with applications to phylogenetic placements. Bioinformatics (Oxford, England). 29: 2869-76. PMID 23990417 DOI: 10.1093/bioinformatics/btt499 |
0.026 |
|
| 2011 |
Alachiotis N, Stamatakis A. FPGA optimizations for a pipelined floating-point exponential unit Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 6578: 316-327. DOI: 10.1007/978-3-642-19475-7_34 |
0.026 |
|
| 2011 |
Al Naddaf O, Livieratos I, Stamatakis A, Tsirogiannis I, Gizas G, Savvas D. Hydraulic characteristics of composted pig manure, perlite, and mixtures of them, and their impact on cucumber grown on bags Scientia Horticulturae. 129: 135-141. DOI: 10.1016/j.scienta.2011.03.023 |
0.024 |
|
| 2010 |
Berger SA, Stamatakis A. Accuracy and performance of single versus double precision arithmetics for maximum likelihood phylogeny reconstruction Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 6068: 270-279. DOI: 10.1007/978-3-642-14403-5_29 |
0.024 |
|
| 2014 |
Kobert K, Flouri T, Aberer A, Stamatakis A. The divisible load balance problem and its application to phylogenetic inference Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 8701: 204-216. DOI: 10.1007/978-3-662-44753-6_16 |
0.024 |
|
| 2012 |
Stamatakis A, Aberer AJ, Goll C, Smith SA, Berger SA, Izquierdo-Carrasco F. RAxML-Light: a tool for computing terabyte phylogenies. Bioinformatics (Oxford, England). 28: 2064-6. PMID 22628519 DOI: 10.1093/Bioinformatics/Bts309 |
0.023 |
|
| 2015 |
Kozlov AM, Aberer AJ, Stamatakis A. ExaML version 3: a tool for phylogenomic analyses on supercomputers. Bioinformatics (Oxford, England). 31: 2577-2579. PMID 25819675 DOI: 10.1093/bioinformatics/btv184 |
0.022 |
|
| 2012 |
Alachiotis N, Berger SA, Stamatakis A. Coupling SIMD and SIMT architectures to boost performance of a phylogeny-aware alignment kernel. Bmc Bioinformatics. 13: 196. PMID 22876807 DOI: 10.1186/1471-2105-13-196 |
0.021 |
|
| 2012 |
Alachiotis N, Pavlidis P, Stamatakis A. Exploiting multi-grain parallelism for efficient selective sweep detection Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 7439: 56-68. DOI: 10.1007/978-3-642-33078-0_5 |
0.021 |
|
| 2014 |
Flouri T, Kobert K, Pissis SP, Stamatakis A. An optimal algorithm for computing all subtree repeats in trees. Philosophical Transactions. Series a, Mathematical, Physical, and Engineering Sciences. 372: 20130140. PMID 24751873 DOI: 10.1098/rsta.2013.0140 |
0.02 |
|
| 2013 |
Pissis SP, Stamatakis A, Pavlidis P. MoTeX: A word-based HPC tool for MoTif extraction 2013 Acm Conference On Bioinformatics, Computational Biology and Biomedical Informatics, Acm-Bcb 2013. 13-22. DOI: 10.1145/2506583.2506587 |
0.02 |
|
| 2013 |
Aberer AJ, Krompass D, Stamatakis A. Pruning rogue taxa improves phylogenetic accuracy: an efficient algorithm and webservice. Systematic Biology. 62: 162-6. PMID 22962004 DOI: 10.1093/sysbio/sys078 |
0.02 |
|
| 2010 |
Poulakakis N, Stamatakis A. Recapitulating the evolution of Afrotheria: 57 genes and rare genomic changes (RGCs) consolidate their history Systematics and Biodiversity. 8: 395-408. DOI: 10.1080/14772000.2010.484436 |
0.017 |
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| 2014 |
Valle M, Schabauer H, Pacher C, Stockinger H, Stamatakis A, Robinson-Rechavi M, Salamin N. Optimization strategies for fast detection of positive selection on phylogenetic trees. Bioinformatics (Oxford, England). PMID 24389654 DOI: 10.1093/Bioinformatics/Btt760 |
0.017 |
|
| 2013 |
Mohamed MA, Stamatakis A, Keramidas V. Anionic Resin-Extractable Phosphorus as an Index of Phosphorus Availability in Calcareous Soils of Crete Amended or Not Amended with Pig Manure Compost Communications in Soil Science and Plant Analysis. 44: 50-61. DOI: 10.1080/00103624.2012.734031 |
0.017 |
|
| 2010 |
Alachiotis N, Berger SA, Stamatakis A. Efficient PC-FPGA communication over Gigabit Ethernet Proceedings - 10th Ieee International Conference On Computer and Information Technology, Cit-2010, 7th Ieee International Conference On Embedded Software and Systems, Icess-2010, Scalcom-2010. 1727-1734. DOI: 10.1109/CIT.2010.302 |
0.016 |
|
| 2010 |
Pfeiffer W, Stamatakis A. Hybrid MPI/Pthreads parallelization of the RAxML phylogenetics code Proceedings of the 2010 Ieee International Symposium On Parallel and Distributed Processing, Workshops and Phd Forum, Ipdpsw 2010. DOI: 10.1109/IPDPSW.2010.5470900 |
0.015 |
|
| 2011 |
Seeland M, Berger SA, Stamatakis A, Kramer S. Parallel structural graph clustering Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 6913: 256-272. DOI: 10.1007/978-3-642-23808-6_17 |
0.014 |
|
| 2012 |
Zhang J, Stamatakis A. The multi-processor scheduling problem in phylogenetics Proceedings of the 2012 Ieee 26th International Parallel and Distributed Processing Symposium Workshops, Ipdpsw 2012. 691-698. DOI: 10.1109/IPDPSW.2012.86 |
0.014 |
|
| 2011 |
Alachiotis N, Berger SA, Stamatakis A. Accelerating phylogeny-aware short DNA read alignment with FPGAs Proceedings - Ieee International Symposium On Field-Programmable Custom Computing Machines, Fccm 2011. 226-233. DOI: 10.1109/FCCM.2011.13 |
0.014 |
|
| 2011 |
Alachiotis N, Stamatakis A. FPGA acceleration of the phylogenetic parsimony kernel? Proceedings - 21st International Conference On Field Programmable Logic and Applications, Fpl 2011. 417-422. DOI: 10.1109/FPL.2011.83 |
0.013 |
|
| 2012 |
Izquierdo-Carrasco F, Gagneur J, Stamatakis A. Trading running time for memory in phylogenetic likelihood computations Bioinformatics 2012 - Proceedings of the International Conference On Bioinformatics Models, Methods and Algorithms. 86-95. |
0.011 |
|
| 2011 |
Aberer AJ, Stamatakis A. A simple and accurate method for rogue taxon identification Proceedings - 2011 Ieee International Conference On Bioinformatics and Biomedicine, Bibm 2011. 118-122. DOI: 10.1109/BIBM.2011.70 |
0.011 |
|
| 2012 |
Alachiotis N, Berger S, Flouri T, Pissis SP, Stamatakis A. Libgapmis: An ultrafast library for short-read single-gap alignment Proceedings - 2012 Ieee International Conference On Bioinformatics and Biomedicine Workshops, Bibmw 2012. 688-695. DOI: 10.1109/BIBMW.2012.6470221 |
0.011 |
|
| 2014 |
Kobert K, Hauser J, Stamatakis A. Is the Protein Model Assignment problem under linked branch lengths NP-hard? Theoretical Computer Science. 524: 48-58. DOI: 10.1016/j.tcs.2013.12.022 |
0.01 |
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| 2013 |
Darriba D, Aberer A, Flouri T, Heath TA, Izquierdo-Carrasco F, Stamatakis A. Boosting the performance of bayesian divergence time estimation with the phylogenetic likelihood library Proceedings - Ieee 27th International Parallel and Distributed Processing Symposium Workshops and Phd Forum, Ipdpsw 2013. 539-548. DOI: 10.1109/IPDPSW.2013.267 |
0.01 |
|
| 2013 |
Izquierdo-Carrasco F, Alachiotis N, Berger S, Flouri T, Pissis SP, Stamatakis A. A generic vectorization scheme and a GPU kernel for the phylogenetic likelihood library Proceedings - Ieee 27th International Parallel and Distributed Processing Symposium Workshops and Phd Forum, Ipdpsw 2013. 530-538. DOI: 10.1109/IPDPSW.2013.103 |
0.01 |
|
| 2013 |
Stamatakis A, Aberer AJ. Novel parallelization schemes for large-scale likelihood-based phylogenetic inference Proceedings - Ieee 27th International Parallel and Distributed Processing Symposium, Ipdps 2013. 1195-1204. DOI: 10.1109/IPDPS.2013.70 |
0.01 |
|
| 2013 |
Hauser J, Kobert K, Izquierdo-Carrasco F, Meusemann K, Misof B, Gertz M, Stamatakis A. Heuristic algorithms for the protein model assignment problem Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 7875: 137-148. DOI: 10.1007/978-3-642-38036-5_16 |
0.01 |
|
| 2012 |
Schabauer H, Valle M, Pacher C, Stockinger H, Stamatakis A, Robinson-Rechavi M, Yang Z, Salamin N. SlimCodeML: An optimized version of CodeML for the branch-site model Proceedings of the 2012 Ieee 26th International Parallel and Distributed Processing Symposium Workshops, Ipdpsw 2012. 706-714. DOI: 10.1109/IPDPSW.2012.88 |
0.01 |
|
| 2012 |
Izquierdo-Carrasco F, Stamatakis A. Inference of huge trees under maximum likelihood Proceedings of the 2012 Ieee 26th International Parallel and Distributed Processing Symposium Workshops, Ipdpsw 2012. 2490-2493. DOI: 10.1109/IPDPSW.2012.309 |
0.01 |
|
| 2011 |
Aluru S, Bader DA, Kalyanaraman A, Agarwal G, Aubanel E, Bhowmick S, Çatalyürek U, Chaudhary V, Clement M, Feng W, Germain R, Herbordt M, Lin H, Madduri K, Meier H, ... ... Stamatakis A, et al. Message from the workshop chairs Ieee International Symposium On Parallel and Distributed Processing Workshops and Phd Forum. 426. DOI: 10.1109/IPDPS.2011.398 |
0.01 |
|
| 2011 |
Berger SA, Stamatakis A, Lücking R. Morphology-based phylogenetic binning of the lichen genera Graphis and Allographa (Ascomycota: Graphidaceae) using molecular site weight calibration Taxon. 60: 1450-1457. |
0.01 |
|
| 2010 |
Alachiotis N, Stamatakis A. Efficient floating-point logarithm unit for FPGAS Proceedings of the 2010 Ieee International Symposium On Parallel and Distributed Processing, Workshops and Phd Forum, Ipdpsw 2010. DOI: 10.1109/IPDPSW.2010.5470752 |
0.01 |
|
| 2010 |
Aberer AJ, Pattengale ND, Stamatakis A. Parallel computation of phylogenetic consensus trees Procedia Computer Science. 1: 1065-1073. DOI: 10.1016/j.procs.2010.04.118 |
0.01 |
|
| 2010 |
Stamatakis A. Phylogenetic Search Algorithms for Maximum Likelihood Algorithms in Computational Molecular Biology: Techniques, Approaches and Applications. 547-577. DOI: 10.1002/9780470892107.ch25 |
0.01 |
|
| 2009 |
Stamatakis A, Ott M. Load balance in the phylogenetic likelihood kernel Proceedings of the International Conference On Parallel Processing. 348-355. DOI: 10.1109/ICPP.2009.29 |
0.01 |
|
| 2009 |
Ott M, Zola J, Aluru S, Stamatakis A. ParBaum: Large-scale maximum likelihood-based Phylogenetic analyses High Performance Computing in Science and Engineering, Garching/Munich 2007 - Transactions of the 3rd Joint Hlrb and Konwihr Status and Result Workshop. 111-125. |
0.01 |
|
| 2009 |
Stockinger H, Auch AF, Göker M, Jan MK, Stamatakis A. Large-scale co-phylogenetic analysis on the grid International Journal of Grid and High Performance Computing. 1: 39-54. |
0.01 |
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