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Takashi Kawashima, M.D., Ph.D - Publications

Affiliations: 
2019- Weizmann Institute of Science, Rehovot, Israel 
Area:
Serotonin, systems neuroscience, computational neuroscience, genetics
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30 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Koh TH, Bishop WE, Kawashima T, Jeon BB, Srinivasan R, Mu Y, Wei Z, Kuhlman SJ, Ahrens MB, Chase SM, Yu BM. Dimensionality reduction of calcium-imaged neuronal population activity. Nature Computational Science. 3: 71-85. PMID 37476302 DOI: 10.1038/s43588-022-00390-2  0.737
2022 Barbara R, Nagathihalli Kantharaju M, Haruvi R, Harrington K, Kawashima T. PyZebrascope: An Open-Source Platform for Brain-Wide Neural Activity Imaging in Zebrafish. Frontiers in Cell and Developmental Biology. 10: 875044. PMID 35663407 DOI: 10.3389/fcell.2022.875044  0.582
2022 Böhm UL, Kimura Y, Kawashima T, Ahrens MB, Higashijima SI, Engert F, Cohen AE. Voltage imaging identifies spinal circuits that modulate locomotor adaptation in zebrafish. Neuron. PMID 35104451 DOI: 10.1016/j.neuron.2022.01.001  0.76
2019 Abdelfattah AS, Kawashima T, Singh A, Novak O, Liu H, Shuai Y, Huang YC, Campagnola L, Seeman SC, Yu J, Zheng J, Grimm JB, Patel R, Friedrich J, Mensh BD, et al. Bright and photostable chemigenetic indicators for extended in vivo voltage imaging. Science (New York, N.Y.). PMID 31371562 DOI: 10.1126/Science.Aav6416  0.736
2019 Marvin JS, Shimoda Y, Magloire V, Leite M, Kawashima T, Jensen TP, Kolb I, Knott EL, Novak O, Podgorski K, Leidenheimer NJ, Rusakov DA, Ahrens MB, Kullmann DM, Looger LL. A genetically encoded fluorescent sensor for in vivo imaging of GABA. Nature Methods. PMID 31308547 DOI: 10.1038/S41592-019-0471-2  0.654
2019 Chowdhury S, Hung CJ, Izawa S, Inutsuka A, Kawamura M, Kawashima T, Bito H, Imayoshi I, Abe M, Sakimura K, Yamanaka A. Dissociating orexin-dependent and -independent functions of orexin neurons using novel Orexin-Flp knock-in mice. Elife. 8. PMID 31159922 DOI: 10.7554/Elife.44927  0.617
2018 Attardo A, Lu J, Kawashima T, Okuno H, Fitzgerald JE, Bito H, Schnitzer MJ. Long-Term Consolidation of Ensemble Neural Plasticity Patterns in Hippocampal Area CA1. Cell Reports. 25: 640-650.e2. PMID 30332644 DOI: 10.1016/J.Celrep.2018.09.064  0.604
2018 Piatkevich KD, Jung EE, Straub C, Linghu C, Park D, Suk HJ, Hochbaum DR, Goodwin D, Pnevmatikakis E, Pak N, Kawashima T, Yang CT, Rhoades JL, Shemesh O, Asano S, et al. Publisher Correction: A robotic multidimensional directed evolution approach applied to fluorescent voltage reporters. Nature Chemical Biology. PMID 29520042 DOI: 10.1038/S41589-018-0023-6  0.723
2018 Piatkevich KD, Jung EE, Straub C, Linghu C, Park D, Suk HJ, Hochbaum DR, Goodwin D, Pnevmatikakis E, Pak N, Kawashima T, Yang CT, Rhoades JL, Shemesh O, Asano S, et al. A robotic multidimensional directed evolution approach applied to fluorescent voltage reporters. Nature Chemical Biology. PMID 29483642 DOI: 10.1038/S41589-018-0004-9  0.771
2017 Kawashima T. The role of the serotonergic system in motor control. Neuroscience Research. PMID 28774814 DOI: 10.1016/J.Neures.2017.07.005  0.396
2016 Kawashima T, Zwart MF, Yang CT, Mensh BD, Ahrens MB. The Serotonergic System Tracks the Outcomes of Actions to Mediate Short-Term Motor Learning. Cell. 167: 933-946.e20. PMID 27881303 DOI: 10.1016/J.Cell.2016.09.055  0.682
2014 Nonaka M, Kim R, Fukushima H, Sasaki K, Suzuki K, Okamura M, Ishii Y, Kawashima T, Kamijo S, Takemoto-Kimura S, Okuno H, Kida S, Bito H. Region-specific activation of CRTC1-CREB signaling mediates long-term fear memory. Neuron. 84: 92-106. PMID 25277455 DOI: 10.1016/J.Neuron.2014.08.049  0.669
2014 Freeman J, Vladimirov N, Kawashima T, Mu Y, Sofroniew NJ, Bennett DV, Rosen J, Yang CT, Looger LL, Ahrens MB. Mapping brain activity at scale with cluster computing. Nature Methods. 11: 941-50. PMID 25068736 DOI: 10.1038/Nmeth.3041  0.777
2014 Vladimirov N, Mu Y, Kawashima T, Bennett DV, Yang CT, Looger LL, Keller PJ, Freeman J, Ahrens MB. Light-sheet functional imaging in fictively behaving zebrafish. Nature Methods. 11: 883-4. PMID 25068735 DOI: 10.1038/Nmeth.3040  0.753
2014 Kawashima T, Okuno H, Bito H. A new era for functional labeling of neurons: activity-dependent promoters have come of age. Frontiers in Neural Circuits. 8: 37. PMID 24795570 DOI: 10.3389/Fncir.2014.00037  0.665
2014 Nonaka M, Fujii H, Kim R, Kawashima T, Okuno H, Bito H. Untangling the two-way signalling route from synapses to the nucleus, and from the nucleus back to the synapses. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 369: 20130150. PMID 24298152 DOI: 10.1098/Rstb.2013.0150  0.712
2014 Kim R, Nonaka M, Yagishita-Kyo N, Kawashima T, Inoue M, Ishii Y, Endo T, Fujii H, Takemoto-Kimura S, Okuno H, Bito H. 1SEP-04 Activity-dependent gene expression in learning and memory(1SEP Cooperativity in shaping the nerve cell function,Symposium,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014)) Seibutsu Butsuri. 54: S124. DOI: 10.2142/Biophys.54.S124_4  0.734
2014 Kawashima T, Kitamura K, Suzuki K, Nonaka M, Kamijo S, Takemoto-Kimura S, Kano M, Okuno H, Ohki K, Bito H. Erratum: Corrigendum: Functional labeling of neurons and their projections using the synthetic activity–dependent promoter E-SARE Nature Methods. 11: 210-210. DOI: 10.1038/Nmeth0214-210A  0.651
2013 Kawashima T, Kitamura K, Suzuki K, Nonaka M, Kamijo S, Takemoto-Kimura S, Kano M, Okuno H, Ohki K, Bito H. Functional labeling of neurons and their projections using the synthetic activity-dependent promoter E-SARE. Nature Methods. 10: 889-95. PMID 23852453 DOI: 10.1038/Nmeth.2559  0.712
2012 Watakabe A, Kato S, Kobayashi K, Takaji M, Nakagami Y, Sadakane O, Ohtsuka M, Hioki H, Kaneko T, Okuno H, Kawashima T, Bito H, Kitamura Y, Yamamori T. Visualization of cortical projection neurons with retrograde TET-off lentiviral vector. Plos One. 7: e46157. PMID 23071541 DOI: 10.1371/Journal.Pone.0046157  0.608
2012 Okuno H, Akashi K, Ishii Y, Yagishita-Kyo N, Suzuki K, Nonaka M, Kawashima T, Fujii H, Takemoto-Kimura S, Abe M, Natsume R, Chowdhury S, Sakimura K, Worley PF, Bito H. Inverse synaptic tagging of inactive synapses via dynamic interaction of Arc/Arg3.1 with CaMKIIβ. Cell. 149: 886-98. PMID 22579289 DOI: 10.1016/J.Cell.2012.02.062  0.598
2011 Tsuda M, Fukuchi M, Shimotori M, Tatsumi S, Tabuchi A, Kawashima T, Okuno H, Bito H. Differential usage of the Arc/Arg3.1 gene promoter by the BDNF- and the neuronal activity-induced transcription activation in neurons Neuroscience Research. 71: e114. DOI: 10.1016/J.Neures.2011.07.485  0.61
2011 Bito H, Nonaka M, Kawashima T, Yagishita-Kyo N, Takemoto-Kimura S, Okuno H. Deciphering the signaling from the synapse to the nucleus Neuroscience Research. 71: e13. DOI: 10.1016/J.Neures.2011.07.050  0.555
2010 Inoue M, Yagishita-Kyo N, Nonaka M, Kawashima T, Okuno H, Bito H. Synaptic activity-responsive element (SARE): A unique genomic structure with an unusual sensitivity to neuronal activity. Communicative & Integrative Biology. 3: 443-6. PMID 21057636 DOI: 10.4161/Cib.3.5.12287  0.742
2010 Bito H, Kawashima T, Inoue M, Yagishita-Kyo N, Nonaka M, Fujii H, Okuno H. Signaling from the synapse to the nucleus and back to the synapse Neuroscience Research. 68: e10. DOI: 10.1016/J.Neures.2010.07.276  0.699
2010 Watakabe A, Takaji M, Nakagami Y, Hioki H, Kaneko T, Kato S, Kobayashi K, Kawashima T, Okuno H, Bito H, Kitamura Y, Yamamori T. TET-OFF lentiviral vectors drive high-level transgene expression in marmoset brains Neuroscience Research. 68. DOI: 10.1016/J.Neures.2010.07.2538  0.585
2010 Nonaka M, Kawashima T, Okamura M, Okuno H, Bito H. Molecular dissection of the critical role of CRTC1-CREB in regulating neuronal immediate early gene expression Neuroscience Research. 68: e88. DOI: 10.1016/J.Neures.2010.07.154  0.587
2010 Okuno H, Kawashima T, Yagishita-Kyo N, Ishii Y, Takemoto-Kimura S, Bito H. Synaptic inactivity enhances postsynaptic contents of activity-induced Arc protein in the neocortex Neuroscience Research. 68: e338. DOI: 10.1016/J.Neures.2010.07.1495  0.583
2009 Kawashima T, Okuno H, Nonaka M, Adachi-Morishima A, Kyo N, Okamura M, Takemoto-Kimura S, Worley PF, Bito H. Synaptic activity-responsive element in the Arc/Arg3.1 promoter essential for synapse-to-nucleus signaling in activated neurons. Proceedings of the National Academy of Sciences of the United States of America. 106: 316-21. PMID 19116276 DOI: 10.1073/Pnas.0806518106  0.63
2007 Okuno H, Naruse H, Kawashima T, Fujii H, Chowdhury S, Worley P, Bito H. Regulation of Arc localization at synapses via interaction with CaMKIIβ Neuroscience Research. 58: S43. DOI: 10.1016/J.Neures.2007.06.252  0.557
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