Misha B. Ahrens - Publications

Affiliations: 
HHMI Janelia Farm Research Campus, Ashburn, VA, United States 
Website:
http://www.janelia.org/lab/ahrens-lab

29 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any innacuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Vladimirov N, Wang C, Höckendorf B, Pujala A, Tanimoto M, Mu Y, Yang CT, Wittenbach JD, Freeman J, Preibisch S, Koyama M, Keller PJ, Ahrens MB. Brain-wide circuit interrogation at the cellular level guided by online analysis of neuronal function. Nature Methods. 15: 1117-1125. PMID 30504888 DOI: 10.1038/s41592-018-0221-x  0.36
2018 Chen X, Mu Y, Hu Y, Kuan AT, Nikitchenko M, Randlett O, Chen AB, Gavornik JP, Sompolinsky H, Engert F, Ahrens MB. Brain-wide Organization of Neuronal Activity and Convergent Sensorimotor Transformations in Larval Zebrafish. Neuron. 100: 876-890.e5. PMID 30473013 DOI: 10.1016/j.neuron.2018.09.042  0.76
2018 Piatkevich KD, Jung EE, Straub C, Linghu C, Park D, Suk HJ, Hochbaum DR, Goodwin D, Pnevmatikakis E, Pak N, Kawashima T, Yang CT, Rhoades JL, Shemesh O, Asano S, ... ... Ahrens MB, et al. Publisher Correction: A robotic multidimensional directed evolution approach applied to fluorescent voltage reporters. Nature Chemical Biology. PMID 29520042 DOI: 10.1038/s41589-018-0023-6  0.76
2018 Piatkevich KD, Jung EE, Straub C, Linghu C, Park D, Suk HJ, Hochbaum DR, Goodwin D, Pnevmatikakis E, Pak N, Kawashima T, Yang CT, Rhoades JL, Shemesh O, Asano S, ... ... Ahrens MB, et al. A robotic multidimensional directed evolution approach applied to fluorescent voltage reporters. Nature Chemical Biology. PMID 29483642 DOI: 10.1038/s41589-018-0004-9  0.76
2017 Friedrich J, Yang W, Soudry D, Mu Y, Ahrens MB, Yuste R, Peterka DS, Paninski L. Multi-scale approaches for high-speed imaging and analysis of large neural populations. Plos Computational Biology. 13: e1005685. PMID 28771570 DOI: 10.1371/journal.pcbi.1005685  0.6
2016 Kawashima T, Zwart MF, Yang CT, Mensh BD, Ahrens MB. The Serotonergic System Tracks the Outcomes of Actions to Mediate Short-Term Motor Learning. Cell. 167: 933-946.e20. PMID 27881303 DOI: 10.1016/j.cell.2016.09.055  0.44
2016 Williamson RS, Ahrens MB, Linden JF, Sahani M. Input-Specific Gain Modulation by Local Sensory Context Shapes Cortical and Thalamic Responses to Complex Sounds. Neuron. PMID 27346532 DOI: 10.1016/j.neuron.2016.05.041  1
2016 Dana H, Mohar B, Sun Y, Narayan S, Gordus A, Hasseman JP, Tsegaye G, Holt GT, Hu A, Walpita D, Patel R, Macklin JJ, Bargmann CI, Ahrens MB, Schreiter ER, et al. Sensitive red protein calcium indicators for imaging neural activity. Elife. 5. PMID 27011354 DOI: 10.7554/eLife.12727  1
2016 Dunn TW, Mu Y, Narayan S, Randlett O, Naumann EA, Yang CT, Schier AF, Freeman J, Engert F, Ahrens MB. Brain-wide mapping of neural activity controlling zebrafish exploratory locomotion. Elife. 5. PMID 27003593 DOI: 10.7554/eLife.12741  1
2016 Dunn TW, Gebhardt C, Naumann EA, Riegler C, Ahrens MB, Engert F, Del Bene F. Neural Circuits Underlying Visually Evoked Escapes in Larval Zebrafish. Neuron. PMID 26804997 DOI: 10.1016/j.neuron.2015.12.021  1
2015 Fosque BF, Sun Y, Dana H, Yang CT, Ohyama T, Tadross MR, Patel R, Zlatic M, Kim DS, Ahrens MB, Jayaraman V, Looger LL, Schreiter ER. Neural circuits. Labeling of active neural circuits in vivo with designed calcium integrators. Science (New York, N.Y.). 347: 755-60. PMID 25678659 DOI: 10.1126/science.1260922  1
2015 Keller PJ, Ahrens MB. Visualizing whole-brain activity and development at the single-cell level using light-sheet microscopy. Neuron. 85: 462-83. PMID 25654253 DOI: 10.1016/j.neuron.2014.12.039  1
2015 Ahrens MB, Engert F. Large-scale imaging in small brains. Current Opinion in Neurobiology. 32: 78-86. PMID 25636154 DOI: 10.1016/j.conb.2015.01.007  1
2015 Keller PJ, Ahrens MB, Freeman J. Light-sheet imaging for systems neuroscience. Nature Methods. 12: 27-9. PMID 25549267 DOI: 10.1038/nmeth.3214  1
2014 Freeman J, Vladimirov N, Kawashima T, Mu Y, Sofroniew NJ, Bennett DV, Rosen J, Yang CT, Looger LL, Ahrens MB. Mapping brain activity at scale with cluster computing. Nature Methods. 11: 941-50. PMID 25068736 DOI: 10.1038/nmeth.3041  0.32
2014 Vladimirov N, Mu Y, Kawashima T, Bennett DV, Yang CT, Looger LL, Keller PJ, Freeman J, Ahrens MB. Light-sheet functional imaging in fictively behaving zebrafish. Nature Methods. 11: 883-4. PMID 25068735 DOI: 10.1038/nmeth.3040  0.36
2013 Huang KH, Ahrens MB, Dunn TW, Engert F. Spinal projection neurons control turning behaviors in zebrafish. Current Biology : Cb. 23: 1566-73. PMID 23910662 DOI: 10.1016/j.cub.2013.06.044  1
2013 Ahrens MB, Huang KH, Narayan S, Mensh BD, Engert F. Two-photon calcium imaging during fictive navigation in virtual environments. Frontiers in Neural Circuits. 7: 104. PMID 23761738 DOI: 10.3389/fncir.2013.00104  1
2013 Ahrens MB, Orger MB, Robson DN, Li JM, Keller PJ. Whole-brain functional imaging at cellular resolution using light-sheet microscopy. Nature Methods. 10: 413-20. PMID 23524393 DOI: 10.1038/nmeth.2434  1
2013 Kokel D, Dunn TW, Ahrens MB, Alshut R, Cheung CY, Saint-Amant L, Bruni G, Mateus R, van Ham TJ, Shiraki T, Fukada Y, Kojima D, Yeh JR, Mikut R, von Lintig J, et al. Identification of nonvisual photomotor response cells in the vertebrate hindbrain. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 33: 3834-43. PMID 23447595 DOI: 10.1523/JNEUROSCI.3689-12.2013  1
2013 Portugues R, Severi KE, Wyart C, Ahrens MB. Optogenetics in a transparent animal: circuit function in the larval zebrafish. Current Opinion in Neurobiology. 23: 119-26. PMID 23246238 DOI: 10.1016/j.conb.2012.11.001  1
2012 Ahrens MB, Li JM, Orger MB, Robson DN, Schier AF, Engert F, Portugues R. Brain-wide neuronal dynamics during motor adaptation in zebrafish. Nature. 485: 471-7. PMID 22622571 DOI: 10.1038/nature11057  1
2011 Ahrens MB, Sahani M. Observers exploit stochastic models of sensory change to help judge the passage of time. Current Biology : Cb. 21: 200-6. PMID 21256018 DOI: 10.1016/j.cub.2010.12.043  1
2010 Englitz B, Ahrens M, Tolnai S, Rübsamen R, Sahani M, Jost J. Multilinear models of single cell responses in the medial nucleus of the trapezoid body. Network (Bristol, England). 21: 91-124. PMID 20735339 DOI: 10.3109/09548981003801996  1
2009 Ahrens MB, Sahani M. Inferring elapsed time from stochastic neural processes Advances in Neural Information Processing Systems 20 - Proceedings of the 2007 Conference 1
2008 Ahrens MB, Paninski L, Sahani M. Inferring input nonlinearities in neural encoding models. Network (Bristol, England). 19: 35-67. PMID 18300178 DOI: 10.1080/09548980701813936  1
2008 Ahrens MB, Linden JF, Sahani M. Nonlinearities and contextual influences in auditory cortical responses modeled with multilinear spectrotemporal methods. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 28: 1929-42. PMID 18287509 DOI: 10.1523/JNEUROSCI.3377-07.2008  1
2006 Huys QJ, Ahrens MB, Paninski L. Efficient estimation of detailed single-neuron models. Journal of Neurophysiology. 96: 872-90. PMID 16624998 DOI: 10.1152/jn.00079.2006  1
2005 Ahrens MB, Huys QJM, Paninski L. Large-scale biophysical parameter estimation in single neurons via constrained linear regression Advances in Neural Information Processing Systems. 25-32.  1
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