| Year |
Citation |
Score |
| 2024 |
Xu Q, Zhang Y, Xu W, Liu D, Jin W, Chen X, Hong N. The chromatin accessibility dynamics during cell fate specifications in zebrafish early embryogenesis. Nucleic Acids Research. PMID 38364856 DOI: 10.1093/nar/gkae095 |
0.345 |
|
| 2024 |
Zhang J, Guo H, Wang L, Zheng M, Kong S, Wu H, Zhao L, Zhao Q, Yang X, He Q, Chen X, Ding L, Yang B. Cediranib enhances the transcription of MHC-I by upregulating IRF-1. Biochemical Pharmacology. 116036. PMID 38301967 DOI: 10.1016/j.bcp.2024.116036 |
0.318 |
|
| 2024 |
Hu Z, Lu Y, Cao J, Lin L, Chen X, Zhou Z, Pu J, Chen G, Ma X, Deng Q, Jin Y, Jiang L, Li Y, Li T, Liu J, et al. -acetyltransferase NAT10 controls cell fates via connecting mRNA cytidine acetylation to chromatin signaling. Science Advances. 10: eadh9871. PMID 38215194 DOI: 10.1126/sciadv.adh9871 |
0.31 |
|
| 2023 |
Zhang Z, Ruf-Zamojski F, Zamojski M, Bernard DJ, Chen X, Troyanskaya OG, Sealfon SC. Peak-agnostic high-resolution cis-regulatory circuitry mapping using single cell multiome data. Nucleic Acids Research. PMID 38084892 DOI: 10.1093/nar/gkad1166 |
0.3 |
|
| 2020 |
Chen X, Gu J, Neuwald AF, Hilakivi-Clarke L, Clarke R, Xuan J. BICORN: An R package for integrative inference of de novo cis-regulatory modules. Scientific Reports. 10: 7960. PMID 32409786 DOI: 10.1038/S41598-020-63043-2 |
0.304 |
|
| 2019 |
Henriksson J, Chen X, Gomes T, Ullah U, Meyer KB, Miragaia R, Duddy G, Pramanik J, Yusa K, Lahesmaa R, Teichmann SA. Genome-wide CRISPR Screens in T Helper Cells Reveal Pervasive Crosstalk between Activation and Differentiation. Cell. PMID 30639098 DOI: 10.1016/J.Cell.2018.11.044 |
0.335 |
|
| 2017 |
Chen X, Yu B, Carriero N, Silva C, Bonneau R. Mocap: large-scale inference of transcription factor binding sites from chromatin accessibility. Nucleic Acids Research. PMID 28334916 DOI: 10.1093/Nar/Gkx174 |
0.587 |
|
| 2017 |
Karwacz K, Miraldi ER, Pokrovskii M, Madi A, Yosef N, Wortman I, Chen X, Watters A, Carriero N, Awasthi A, Regev A, Bonneau R, Littman D, Kuchroo VK. Critical role of IRF1 and BATF in forming chromatin landscape during type 1 regulatory cell differentiation. Nature Immunology. PMID 28166218 DOI: 10.1038/Ni.3683 |
0.693 |
|
| 2014 |
Yu B, Doraiswamy H, Chen X, Miraldi E, Arrieta-Ortiz ML, Hafemeister C, Madar A, Bonneau R, Silva CT. Genotet: An Interactive Web-based Visual Exploration Framework to Support Validation of Gene Regulatory Networks. Ieee Transactions On Visualization and Computer Graphics. 20: 1903-12. PMID 26356904 DOI: 10.1109/Tvcg.2014.2346753 |
0.475 |
|
| 2014 |
Guedan S, Chen X, Madar A, Carpenito C, McGettigan SE, Frigault MJ, Lee J, Posey AD, Scholler J, Scholler N, Bonneau R, June CH. ICOS-based chimeric antigen receptors program bipolar TH17/TH1 cells. Blood. 124: 1070-80. PMID 24986688 DOI: 10.1182/Blood-2013-10-535245 |
0.652 |
|
| 2014 |
Murtha M, Tokcaer-Keskin Z, Tang Z, Strino F, Chen X, Wang Y, Xi X, Basilico C, Brown S, Bonneau R, Kluger Y, Dailey L. FIREWACh: high-throughput functional detection of transcriptional regulatory modules in mammalian cells. Nature Methods. 11: 559-65. PMID 24658142 DOI: 10.1038/Nmeth.2885 |
0.621 |
|
| 2013 |
Chen X, Xuan J, Wang C, Shajahan AN, Riggins RB, Clarke R. Reconstruction of transcriptional regulatory networks by stability-based network component analysis. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 10: 1347-58. PMID 24407294 DOI: 10.1109/Tcbb.2012.146 |
0.308 |
|
| 2012 |
Chen X, Wang C, Shajahan AN, Riggins RB, Clarke R, Xuan J. Reconstruction of transcription regulatory networks by stability-based network component analysis Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 7292: 36-47. DOI: 10.1007/978-3-642-30191-9_4 |
0.307 |
|
| 2008 |
Chen X, Xu H, Yuan P, Fang F, Huss M, Vega VB, Wong E, Orlov YL, Zhang W, Jiang J, Loh YH, Yeo HC, Yeo ZX, Narang V, Govindarajan KR, et al. Integration of external signaling pathways with the core transcriptional network in embryonic stem cells. Cell. 133: 1106-17. PMID 18555785 DOI: 10.1016/J.Cell.2008.04.043 |
0.317 |
|
| 2006 |
Wu Q, Chen X, Zhang J, Loh YH, Low TY, Zhang W, Zhang W, Sze SK, Lim B, Ng HH. Sall4 interacts with Nanog and co-occupies Nanog genomic sites in embryonic stem cells. The Journal of Biological Chemistry. 281: 24090-4. PMID 16840789 DOI: 10.1074/Jbc.C600122200 |
0.308 |
|
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