| Year |
Citation |
Score |
| 2022 |
Boileau P, Hejazi NS, van der Laan MJ, Dudoit S. Cross-Validated Loss-Based Covariance Matrix Estimator Selection in High Dimensions. Journal of Computational and Graphical Statistics : a Joint Publication of American Statistical Association, Institute of Mathematical Statistics, Interface Foundation of North America. 32: 601-612. PMID 37273839 DOI: 10.1080/10618600.2022.2110883 |
0.502 |
|
| 2022 |
Boileau P, Qi NT, van der Laan MJ, Dudoit S, Leng N. A flexible approach for predictive biomarker discovery. Biostatistics (Oxford, England). PMID 35861622 DOI: 10.1093/biostatistics/kxac029 |
0.5 |
|
| 2020 |
Boileau P, Hejazi NS, Dudoit S. Exploring High-Dimensional Biological Data with Sparse Contrastive Principal Component Analysis. Bioinformatics (Oxford, England). PMID 32176249 DOI: 10.1093/Bioinformatics/Btaa176 |
0.319 |
|
| 2020 |
Van den Berge K, Roux de Bézieux H, Street K, Saelens W, Cannoodt R, Saeys Y, Dudoit S, Clement L. Trajectory-based differential expression analysis for single-cell sequencing data. Nature Communications. 11: 1201. PMID 32139671 DOI: 10.1038/S41467-020-14766-3 |
0.401 |
|
| 2019 |
Cole MB, Risso D, Wagner A, DeTomaso D, Ngai J, Purdom E, Dudoit S, Yosef N. Performance Assessment and Selection of Normalization Procedures for Single-Cell RNA-Seq. Cell Systems. 8: 315-328.e8. PMID 31022373 DOI: 10.1016/J.Cels.2019.03.010 |
0.379 |
|
| 2019 |
Risso D, Perraudeau F, Gribkova S, Dudoit S, Vert JP. Publisher Correction: A general and flexible method for signal extraction from single-cell RNA-seq data. Nature Communications. 10: 646. PMID 30718493 DOI: 10.1038/S41467-019-08614-2 |
0.311 |
|
| 2018 |
Van den Berge K, Perraudeau F, Soneson C, Love MI, Risso D, Vert JP, Robinson MD, Dudoit S, Clement L. Observation weights unlock bulk RNA-seq tools for zero inflation and single-cell applications. Genome Biology. 19: 24. PMID 29478411 DOI: 10.1186/S13059-018-1406-4 |
0.352 |
|
| 2018 |
Risso D, Perraudeau F, Gribkova S, Dudoit S, Vert JP. A general and flexible method for signal extraction from single-cell RNA-seq data. Nature Communications. 9: 284. PMID 29348443 DOI: 10.1038/S41467-017-02554-5 |
0.398 |
|
| 2017 |
Perraudeau F, Risso D, Street K, Purdom E, Dudoit S. Bioconductor workflow for single-cell RNA sequencing: Normalization, dimensionality reduction, clustering, and lineage inference. F1000research. 6: 1158. PMID 28868140 DOI: 10.12688/F1000Research.12122.1 |
0.332 |
|
| 2017 |
Vallejos CA, Risso D, Scialdone A, Dudoit S, Marioni JC. Normalizing single-cell RNA sequencing data: challenges and opportunities. Nature Methods. PMID 28504683 DOI: 10.1038/Nmeth.4292 |
0.365 |
|
| 2014 |
Risso D, Ngai J, Speed TP, Dudoit S. Normalization of RNA-seq data using factor analysis of control genes or samples. Nature Biotechnology. 32: 896-902. PMID 25150836 DOI: 10.1038/Nbt.2931 |
0.42 |
|
| 2014 |
Cleynen A, Dudoit S, Robin S. Comparing Segmentation Methods for Genome Annotation Based on RNA-Seq Data Journal of Agricultural, Biological, and Environmental Statistics. 19: 101-118. DOI: 10.1007/S13253-013-0159-5 |
0.377 |
|
| 2012 |
Labbe A, Dudoit S. Special issue on computational statistical methods for genomics and systems biology. Statistical Applications in Genetics and Molecular Biology. 11. PMID 22499689 DOI: 10.2202/1544-6115.1759 |
0.316 |
|
| 2012 |
Jacob L, Neuvial P, Dudoit S. More power via graph-structured tests for differential expression of gene networks Annals of Applied Statistics. 6: 561-600. DOI: 10.1214/11-Aoas528 |
0.32 |
|
| 2011 |
Risso D, Schwartz K, Sherlock G, Dudoit S. GC-content normalization for RNA-Seq data. Bmc Bioinformatics. 12: 480. PMID 22177264 DOI: 10.1186/1471-2105-12-480 |
0.424 |
|
| 2011 |
Graveley BR, Brooks AN, Carlson JW, Duff MO, Landolin JM, Yang L, Artieri CG, van Baren MJ, Boley N, Booth BW, Brown JB, Cherbas L, Davis CA, Dobin A, Li R, ... ... Dudoit S, et al. The developmental transcriptome of Drosophila melanogaster. Nature. 471: 473-9. PMID 21179090 DOI: 10.1038/Nature09715 |
0.363 |
|
| 2011 |
Brooks AN, Yang L, Duff MO, Hansen KD, Park JW, Dudoit S, Brenner SE, Graveley BR. Conservation of an RNA regulatory map between Drosophila and mammals. Genome Research. 21: 193-202. PMID 20921232 DOI: 10.1101/Gr.108662.110 |
0.592 |
|
| 2010 |
Hansen KD, Brenner SE, Dudoit S. Biases in Illumina transcriptome sequencing caused by random hexamer priming. Nucleic Acids Research. 38: e131. PMID 20395217 DOI: 10.1093/Nar/Gkq224 |
0.587 |
|
| 2010 |
Bullard JH, Mostovoy Y, Dudoit S, Brem RB. Polygenic and directional regulatory evolution across pathways in Saccharomyces. Proceedings of the National Academy of Sciences of the United States of America. 107: 5058-63. PMID 20194736 DOI: 10.1073/Pnas.0912959107 |
0.748 |
|
| 2010 |
Bullard JH, Purdom E, Hansen KD, Dudoit S. Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments. Bmc Bioinformatics. 11: 94. PMID 20167110 DOI: 10.1186/1471-2105-11-94 |
0.76 |
|
| 2009 |
Hansen KD, Lareau LF, Blanchette M, Green RE, Meng Q, Rehwinkel J, Gallusser FL, Izaurralde E, Rio DC, Dudoit S, Brenner SE. Genome-wide identification of alternative splice forms down-regulated by nonsense-mediated mRNA decay in Drosophila. Plos Genetics. 5: e1000525. PMID 19543372 DOI: 10.1371/Journal.Pgen.1000525 |
0.607 |
|
| 2009 |
Durinck S, Bullard J, Spellman PT, Dudoit S. GenomeGraphs: integrated genomic data visualization with R. Bmc Bioinformatics. 10: 2. PMID 19123956 DOI: 10.1186/1471-2105-10-2 |
0.736 |
|
| 2008 |
Lee A, Hansen KD, Bullard J, Dudoit S, Sherlock G. Novel low abundance and transient RNAs in yeast revealed by tiling microarrays and ultra high-throughput sequencing are not conserved across closely related yeast species. Plos Genetics. 4: e1000299. PMID 19096707 DOI: 10.1371/Journal.Pgen.1000299 |
0.738 |
|
| 2008 |
Dudoit S, Gilbert HN, van der Laan MJ. Resampling-based empirical Bayes multiple testing procedures for controlling generalized tail probability and expected value error rates: focus on the false discovery rate and simulation study. Biometrical Journal. Biometrische Zeitschrift. 50: 716-44. PMID 18932138 DOI: 10.1002/Bimj.200710473 |
0.732 |
|
| 2008 |
Shilane D, Martikainen J, Dudoit S, Ovaska SJ. A general framework for statistical performance comparison of evolutionary computation algorithms Information Sciences. 178: 2870-2879. DOI: 10.1016/J.Ins.2008.03.007 |
0.717 |
|
| 2007 |
Barrier A, Roser F, Boëlle PY, Franc B, Tse C, Brault D, Lacaine F, Houry S, Callard P, Penna C, Debuire B, Flahault A, Dudoit S, Lemoine A. Prognosis of stage II colon cancer by non-neoplastic mucosa gene expression profiling. Oncogene. 26: 2642-8. PMID 17043639 DOI: 10.1038/Sj.Onc.1210060 |
0.323 |
|
| 2006 |
Rubin D, Dudoit S, van der Laan M. A method to increase the power of multiple testing procedures through sample splitting. Statistical Applications in Genetics and Molecular Biology. 5: Article19. PMID 17049030 DOI: 10.2202/1544-6115.1148 |
0.588 |
|
| 2006 |
Barrier A, Boelle PY, Roser F, Gregg J, Tse C, Brault D, Lacaine F, Houry S, Huguier M, Franc B, Flahault A, Lemoine A, Dudoit S. Stage II colon cancer prognosis prediction by tumor gene expression profiling. Journal of Clinical Oncology : Official Journal of the American Society of Clinical Oncology. 24: 4685-91. PMID 16966692 DOI: 10.1200/Jco.2005.05.0229 |
0.316 |
|
| 2006 |
Keleş S, van der Laan MJ, Dudoit S, Cawley SE. Multiple testing methods for ChIP-Chip high density oligonucleotide array data. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 13: 579-613. PMID 16706714 DOI: 10.1089/Cmb.2006.13.579 |
0.571 |
|
| 2006 |
Wang Y, Zhao LP, Dudoit S. A fine-scale linkage-disequilibrium measure based on length of haplotype sharing. American Journal of Human Genetics. 78: 615-28. PMID 16532392 DOI: 10.1086/502632 |
0.372 |
|
| 2006 |
Hothorn T, Bühlmann P, Dudoit S, Molinaro A, van der Laan MJ. Survival ensembles. Biostatistics (Oxford, England). 7: 355-73. PMID 16344280 DOI: 10.1093/biostatistics/kxj011 |
0.452 |
|
| 2006 |
Laan MJvd, Dudoit S, Vaart AWvd. The cross-validated adaptive epsilon-net estimator Statistics & Decisions. 24. DOI: 10.1524/Stnd.2006.24.3.373 |
0.32 |
|
| 2006 |
Vaart AWvd, Dudoit S, Laan MJvd. Oracle inequalities for multi-fold cross validation Statistics & Decisions. 24. DOI: 10.1524/Stnd.2006.24.3.351 |
0.325 |
|
| 2006 |
Barrier A, Brault D, Houry S, Dudoit S, Lemoine A, Flahault A, Boelle P. Prognosis prediction of stage II colon cancer by gene expression profiling Journal of Clinical Oncology. 24: 3565-3565. DOI: 10.1200/Jco.2006.24.18_Suppl.3565 |
0.325 |
|
| 2005 |
Barrier A, Boelle PY, Lemoine A, Tse C, Brault D, Chiappini F, Lacaine F, Houry S, Huguier M, Flahault A, Dudoit S. Gene expression profiling of nonneoplastic mucosa may predict clinical outcome of colon cancer patients. Diseases of the Colon and Rectum. 48: 2238-48. PMID 16228831 DOI: 10.1007/S10350-005-0175-9 |
0.333 |
|
| 2005 |
Barrier A, Lemoine A, Boelle PY, Tse C, Brault D, Chiappini F, Breittschneider J, Lacaine F, Houry S, Huguier M, Van der Laan MJ, Speed T, Debuire B, Flahault A, Dudoit S. Colon cancer prognosis prediction by gene expression profiling. Oncogene. 24: 6155-64. PMID 16091735 DOI: 10.1038/Sj.Onc.1208984 |
0.531 |
|
| 2005 |
Dudoit S, Van Der Laan MJ. Asymptotics of cross-validated risk estimation in estimator selection and performance assessment Statistical Methodology. 2: 131-154. DOI: 10.1016/J.Stamet.2005.02.003 |
0.329 |
|
| 2004 |
van der Laan MJ, Dudoit S, Keles S. Asymptotic optimality of likelihood-based cross-validation. Statistical Applications in Genetics and Molecular Biology. 3: Article4. PMID 16646820 DOI: 10.2202/1544-6115.1036 |
0.543 |
|
| 2004 |
van der Laan MJ, Dudoit S, Pollard KS. Augmentation procedures for control of the generalized family-wise error rate and tail probabilities for the proportion of false positives. Statistical Applications in Genetics and Molecular Biology. 3: Article15. PMID 16646793 DOI: 10.2202/1544-6115.1042 |
0.709 |
|
| 2004 |
van der Laan MJ, Dudoit S, Pollard KS. Multiple testing. Part II. Step-down procedures for control of the family-wise error rate. Statistical Applications in Genetics and Molecular Biology. 3: Article14. PMID 16646792 DOI: 10.2202/1544-6115.1041 |
0.725 |
|
| 2004 |
Dudoit S, van der Laan MJ, Pollard KS. Multiple testing. Part I. Single-step procedures for control of general type I error rates. Statistical Applications in Genetics and Molecular Biology. 3: Article13. PMID 16646791 DOI: 10.2202/1544-6115.1040 |
0.728 |
|
| 2004 |
Kele? S, Van Der Laan M, Dudoit S. Asymptotically optimal model selection method with right censored outcomes Bernoulli. 10: 1011-1037. DOI: 10.3150/Bj/1106314848 |
0.351 |
|
| 2004 |
Molinaro AM, Dudoit S, Van Der Laan MJ. Tree-based multivariate regression and density estimation with right-censored data Journal of Multivariate Analysis. 90: 154-177. DOI: 10.1016/J.Jmva.2004.02.003 |
0.346 |
|
| 2003 |
Keles S, van der Laan MJ, Dudoit S, Xing B, Eisen MB. Supervised detection of regulatory motifs in DNA sequences. Statistical Applications in Genetics and Molecular Biology. 2: Article5. PMID 16646783 DOI: 10.2202/1544-6115.1015 |
0.556 |
|
| 2003 |
Dudoit S, Gentleman RC, Quackenbush J. Open source software for the analysis of microarray data. Biotechniques. 45-51. PMID 12664684 DOI: 10.2144/Mar03Dudoit |
0.309 |
|
| 2003 |
Dudoit S, van der Laan MJ, Keleş S, Molinaro AM, Sinisi SE, Teng SL. Loss-based estimation with cross-validation Acm Sigkdd Explorations Newsletter. 5: 56-68. DOI: 10.1145/980972.980981 |
0.355 |
|
| 2003 |
Ge Y, Dudoit S, Speed TP, Glonek G, Solomon P, Grant GR, Kendziorski CM, Maindonald JH, Storey JD, Westfall PH. Resampling-based multiple testing for microarray data analysis Test. 12: 1-77. DOI: 10.1007/Bf02595811 |
0.417 |
|
| 2002 |
Chang HY, Chi JT, Dudoit S, Bondre C, van de Rijn M, Botstein D, Brown PO. Diversity, topographic differentiation, and positional memory in human fibroblasts. Proceedings of the National Academy of Sciences of the United States of America. 99: 12877-82. PMID 12297622 DOI: 10.1073/Pnas.162488599 |
0.305 |
|
| 2002 |
Dudoit S, Fridlyand J. A prediction-based resampling method for estimating the number of clusters in a dataset. Genome Biology. 3: RESEARCH0036. PMID 12184810 DOI: 10.1186/Gb-2002-3-7-Research0036 |
0.307 |
|
| 2002 |
Yang YH, Dudoit S, Luu P, Lin DM, Peng V, Ngai J, Speed TP. Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation. Nucleic Acids Research. 30: e15. PMID 11842121 DOI: 10.1093/Nar/30.4.E15 |
0.366 |
|
| 2002 |
Yang YH, Buckley MJ, Dudoit S, Speed TP. Comparison of methods for image analysis on cDNA microarray data Journal of Computational and Graphical Statistics. 11: 108-136. DOI: 10.1198/106186002317375640 |
0.334 |
|
| 2002 |
Dudoit S, Fridlyand J, Speed TP. Comparison of discrimination methods for the classification of tumors using gene expression data Journal of the American Statistical Association. 97: 77-86. DOI: 10.1198/016214502753479248 |
0.331 |
|
| 2001 |
Goldstein DR, Dudoit S, Speed TP. Power and robustness of a score test for linkage analysis of quantitative traits using identity by descent data on sib pairs. Genetic Epidemiology. 20: 415-31. PMID 11319783 DOI: 10.1002/Gepi.1011 |
0.359 |
|
| 2000 |
Dudoit S, Speed TP. A score test for the linkage analysis of qualitative and quantitative traits based on identity by descent data from sib-pairs. Biostatistics (Oxford, England). 1: 1-26. PMID 12933522 DOI: 10.1093/Biostatistics/1.1.1 |
0.375 |
|
| 2000 |
Callow MJ, Dudoit S, Gong EL, Speed TP, Rubin EM. Microarray expression profiling identifies genes with altered expression in HDL-deficient mice. Genome Research. 10: 2022-9. PMID 11116096 DOI: 10.1101/Gr.10.12.2022 |
0.307 |
|
| 2000 |
Goldstein DR, Dudoit S, Speed TP. Power of a score test for quantitative trait linkage analysis of relative pairs. Genetic Epidemiology. 19: S85-91. PMID 11055375 DOI: 10.1002/1098-2272(2000)19:1+<::Aid-Gepi13>3.0.Co;2-7 |
0.339 |
|
| 1999 |
Dudoit S, Speed TP. A score test for linkage using identity by descent data from sibships Annals of Statistics. 27: 943-986. DOI: 10.1214/Aos/1018031264 |
0.308 |
|
| 1999 |
Dudoit S. Statistical methods for the characterisation of tumour types using cDNA microarray data Nature Genetics. 23: 42-42. DOI: 10.1038/14296 |
0.364 |
|
| Low-probability matches (unlikely to be authored by this person) |
| 2009 |
Chae L, Sudat S, Dudoit S, Zhu T, Luan S. Diverse transcriptional programs associated with environmental stress and hormones in the Arabidopsis receptor-like kinase gene family. Molecular Plant. 2: 84-107. PMID 19529822 DOI: 10.1093/Mp/Ssn083 |
0.297 |
|
| 2019 |
Schiffman C, Petrick L, Perttula K, Yano Y, Carlsson H, Whitehead T, Metayer C, Hayes J, Rappaport S, Dudoit S. Filtering procedures for untargeted LC-MS metabolomics data. Bmc Bioinformatics. 20: 334. PMID 31200644 DOI: 10.1186/S12859-019-2871-9 |
0.292 |
|
| 2022 |
Van den Berge K, Chou HJ, Roux de Bézieux H, Street K, Risso D, Ngai J, Dudoit S. Normalization benchmark of ATAC-seq datasets shows the importance of accounting for GC-content effects. Cell Reports Methods. 2: 100321. PMID 36452861 DOI: 10.1016/j.crmeth.2022.100321 |
0.292 |
|
| 2018 |
Risso D, Purvis L, Fletcher RB, Das D, Ngai J, Dudoit S, Purdom E. clusterExperiment and RSEC: A Bioconductor package and framework for clustering of single-cell and other large gene expression datasets. Plos Computational Biology. 14: e1006378. PMID 30180157 DOI: 10.1371/Journal.Pcbi.1006378 |
0.29 |
|
| 2003 |
Dudoit S, Fridlyand J. Bagging to improve the accuracy of a clustering procedure. Bioinformatics (Oxford, England). 19: 1090-9. PMID 12801869 DOI: 10.1093/Bioinformatics/Btg038 |
0.289 |
|
| 2006 |
Chiappini F, Barrier A, Saffroy R, Domart MC, Dagues N, Azoulay D, Sebagh M, Franc B, Chevalier S, Debuire B, Dudoit S, Lemoine A. Exploration of global gene expression in human liver steatosis by high-density oligonucleotide microarray. Laboratory Investigation; a Journal of Technical Methods and Pathology. 86: 154-65. PMID 16344856 DOI: 10.1038/Labinvest.3700374 |
0.289 |
|
| 2003 |
Dudoit S, Shaffer JP, Boldrick JC. Multiple hypothesis testing in microarray experiments Statistical Science. 18: 71-103. DOI: 10.1214/Ss/1056397487 |
0.288 |
|
| 2008 |
Durbin B, Dudoit S, van der Laan MJ. A deletion/substitution/addition algorithm for classification neural networks, with applications to biomedical data Journal of Statistical Planning and Inference. 138: 464-488. DOI: 10.1016/J.Jspi.2007.06.002 |
0.275 |
|
| 2018 |
Street K, Risso D, Fletcher RB, Das D, Ngai J, Yosef N, Purdom E, Dudoit S. Slingshot: cell lineage and pseudotime inference for single-cell transcriptomics. Bmc Genomics. 19: 477. PMID 29914354 DOI: 10.1186/S12864-018-4772-0 |
0.273 |
|
| 2005 |
Barrier A, Olaya N, Chiappini F, Roser F, Scatton O, Artus C, Franc B, Dudoit S, Flahault A, Debuire B, Azoulay D, Lemoine A. Ischemic preconditioning modulates the expression of several genes, leading to the overproduction of IL-1Ra, iNOS, and Bcl-2 in a human model of liver ischemia-reperfusion. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 19: 1617-26. PMID 16195370 DOI: 10.1096/Fj.04-3445Com |
0.271 |
|
| 2002 |
Chen X, Cheung ST, So S, Fan ST, Barry C, Higgins J, Lai KM, Ji J, Dudoit S, Ng IO, Van De Rijn M, Botstein D, Brown PO. Gene expression patterns in human liver cancers. Molecular Biology of the Cell. 13: 1929-39. PMID 12058060 DOI: 10.1091/Mbc.02-02-0023 |
0.267 |
|
| 2009 |
Osborne EA, Dudoit S, Rine J. The establishment of gene silencing at single-cell resolution. Nature Genetics. 41: 800-6. PMID 19543267 DOI: 10.1038/Ng.402 |
0.262 |
|
| 2019 |
Grigoryan H, Schiffman C, Gunter MJ, Naccarati A, Polidoro S, Dagnino S, Dudoit S, Vineis P, Rappaport SM. Cys34 Adductomics Links Colorectal Cancer with the Gut Microbiota and Redox Biology. Cancer Research. PMID 31641032 DOI: 10.1158/0008-5472.Can-19-1529 |
0.261 |
|
| 2006 |
Barrier AJ, Lemoine A, Dudoit S. Stage III Colon Cancer Prognosis Prediction by Tumor Gene Expression Profiling: 526 The American Journal of Gastroenterology. 101. DOI: 10.14309/00000434-200609001-00526 |
0.252 |
|
| 2020 |
Brann DH, Tsukahara T, Weinreb C, Lipovsek M, Van den Berge K, Gong B, Chance R, Macaulay IC, Chou HJ, Fletcher RB, Das D, Street K, de Bezieux HR, Choi YG, Risso D, ... Dudoit S, et al. Non-neuronal expression of SARS-CoV-2 entry genes in the olfactory system suggests mechanisms underlying COVID-19-associated anosmia. Science Advances. 6. PMID 32937591 DOI: 10.1126/Sciadv.Abc5801 |
0.252 |
|
| 2004 |
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, et al. Bioconductor: open software development for computational biology and bioinformatics. Genome Biology. 5: R80. PMID 15461798 DOI: 10.1186/Gb-2004-5-10-R80 |
0.248 |
|
| 2017 |
Fletcher RB, Das D, Gadye L, Street KN, Baudhuin A, Wagner A, Cole MB, Flores Q, Choi YG, Yosef N, Purdom E, Dudoit S, Risso D, Ngai J. Deconstructing Olfactory Stem Cell Trajectories at Single-Cell Resolution. Cell Stem Cell. PMID 28506465 DOI: 10.1016/J.Stem.2017.04.003 |
0.247 |
|
| 2019 |
Yano Y, Schiffman C, Grigoryan H, Hayes J, Edmands W, Petrick L, Whitehead T, Metayer C, Dudoit S, Rappaport S. Untargeted adductomics of newborn dried blood spots identifies modifications to human serum albumin associated with childhood leukemia. Leukemia Research. 88: 106268. PMID 31760269 DOI: 10.1016/J.Leukres.2019.106268 |
0.239 |
|
| 2002 |
Boldrick JC, Alizadeh AA, Diehn M, Dudoit S, Liu CL, Belcher CE, Botstein D, Staudt LM, Brown PO, Relman DA. Stereotyped and specific gene expression programs in human innate immune responses to bacteria. Proceedings of the National Academy of Sciences of the United States of America. 99: 972-7. PMID 11805339 DOI: 10.1073/Pnas.231625398 |
0.237 |
|
| 2014 |
Ferreira T, Wilson SR, Choi YG, Risso D, Dudoit S, Speed TP, Ngai J. Silencing of odorant receptor genes by G protein βγ signaling ensures the expression of one odorant receptor per olfactory sensory neuron. Neuron. 81: 847-59. PMID 24559675 DOI: 10.1016/J.Neuron.2014.01.001 |
0.236 |
|
| 2019 |
Yano Y, Grigoryan H, Schiffman C, Edmands W, Petrick L, Hall K, Whitehead T, Metayer C, Dudoit S, Rappaport S. Untargeted adductomics of Cys34 modifications to human serum albumin in newborn dried blood spots. Analytical and Bioanalytical Chemistry. PMID 30783713 DOI: 10.1007/S00216-019-01675-8 |
0.229 |
|
| 2018 |
Perttula K, Schiffman C, Edmands WMB, Petrick L, Grigoryan H, Cai X, Gunter MJ, Naccarati A, Polidoro S, Dudoit S, Vineis P, Rappaport SM. Untargeted lipidomic features associated with colorectal cancer in a prospective cohort. Bmc Cancer. 18: 996. PMID 30340609 DOI: 10.1186/S12885-018-4894-4 |
0.229 |
|
| 2002 |
Dudoit S, Yang YH, Callow MJ, Speed TP. Statistical methods for identifying differentially expressed genes in replicated cDNA microarray experiments Statistica Sinica. 12: 111-139. |
0.218 |
|
| 2019 |
Petrick LM, Schiffman C, Edmands WMB, Yano Y, Perttula K, Whitehead T, Metayer C, Wheelock CE, Arora M, Grigoryan H, Carlsson H, Dudoit S, Rappaport SM. Metabolomics of Neonatal Blood Spots Reveal Distinct Phenotypes of Pediatric Acute Lymphoblastic Leukemia and Potential Effects of Early-life Nutrition. Cancer Letters. PMID 30904619 DOI: 10.1016/J.Canlet.2019.03.007 |
0.217 |
|
| 2017 |
Petrick L, Edmands W, Schiffman C, Grigoryan H, Perttula K, Yano Y, Dudoit S, Whitehead T, Metayer C, Rappaport S. An untargeted metabolomics method for archived newborn dried blood spots in epidemiologic studies. Metabolomics : Official Journal of the Metabolomic Society. 13. PMID 29706849 DOI: 10.1007/S11306-016-1153-Z |
0.21 |
|
| 2024 |
Roux de Bézieux H, Van den Berge K, Street K, Dudoit S. Trajectory inference across multiple conditions with condiments. Nature Communications. 15: 833. PMID 38280860 DOI: 10.1038/s41467-024-44823-0 |
0.209 |
|
| 2000 |
Goldstein DR, Dudoit S, Speed TP. Robust transmission regression models for linkage and association Genetic Epidemiology. 19: S78-S84. PMID 11055374 DOI: 10.1002/1098-2272(2000)19:1+<::AID-GEPI12>3.0.CO;2-A |
0.207 |
|
| 2007 |
Barrier A, Boelle P, Lemoine A, Flahault A, Dudoit S, Huguier M. Génomique somatique et pronostic des cancers colorectaux Bulletin De L'AcadéMie Nationale De MéDecine. 191: 1091-1103. DOI: 10.1016/S0001-4079(19)32981-4 |
0.201 |
|
| 2020 |
Serrano-Gómez SJ, Schiffman C, Grigoryan H, Carlsson H, Dudoit S, John EM, Rappaport SM, Fejerman L. Abstract C065: Breast cancer risk in U.S-born Latina women: potential role of reactive electrophiles Cancer Epidemiology, Biomarkers & Prevention. DOI: 10.1158/1538-7755.Disp18-C065 |
0.197 |
|
| 2007 |
Barrier A, Boelle PY, Lemoine A, Flahault A, Dudoit S, Huguier M. [Gene expression profiling in colon cancer]. Bulletin De L'AcadéMie Nationale De MéDecine. 191: 1091-101; discussion. PMID 18402166 |
0.179 |
|
| 2022 |
Roux de Bézieux H, Lima L, Perraudeau F, Mary A, Dudoit S, Jacob L. CALDERA: finding all significant de Bruijn subgraphs for bacterial GWAS. Bioinformatics (Oxford, England). 38: i36-i44. PMID 35758804 DOI: 10.1093/bioinformatics/btac238 |
0.171 |
|
| 2007 |
Barrier A, Boelle P, Brault D, Houry S, Lacaine F, Flahault A, Dudoit S, Lemoine A. Stage III colon cancer prognosis prediction by gene expression profiling Journal of Clinical Oncology. 25: 10590-10590. DOI: 10.1200/jco.2007.25.18_suppl.10590 |
0.159 |
|
| 2021 |
Yao Z, Liu H, Xie F, Fischer S, Adkins RS, Aldridge AI, Ament SA, Bartlett A, Behrens MM, Van den Berge K, Bertagnolli D, de Bézieux HR, Biancalani T, Booeshaghi AS, Bravo HC, ... ... Dudoit S, et al. A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex. Nature. 598: 103-110. PMID 34616066 DOI: 10.1038/s41586-021-03500-8 |
0.159 |
|
| 2021 |
Kinisu M, Choi YJ, Cattoglio C, Liu K, Roux de Bezieux H, Valbuena R, Pum N, Dudoit S, Huang H, Xuan Z, Kim SY, He L. Klf5 establishes bi-potential cell fate by dual regulation of ICM and TE specification genes. Cell Reports. 37: 109982. PMID 34758315 DOI: 10.1016/j.celrep.2021.109982 |
0.152 |
|
| 2023 |
den Berge KV, Chou HJ, Kunda D, Risso D, Street K, Purdom E, Dudoit S, Ngai J, Heavner W. A Latent Activated Olfactory Stem Cell State Revealed by Single Cell Transcriptomic and Epigenomic Profiling. Biorxiv : the Preprint Server For Biology. PMID 37961539 DOI: 10.1101/2023.10.26.564041 |
0.126 |
|
| 2023 |
Metayer C, Imani P, Dudoit S, Morimoto L, Ma X, Wiemels JL, Petrick LM. One-Carbon (Folate) Metabolism Pathway at Birth and Risk of Childhood Acute Lymphoblastic Leukemia: A Biomarker Study in Newborns. Cancers. 15. PMID 36831356 DOI: 10.3390/cancers15041011 |
0.111 |
|
| 2021 |
Petrick L, Imani P, Perttula K, Yano Y, Whitehead T, Metayer C, Schiffman C, Dolios G, Dudoit S, Rappaport S. Untargeted metabolomics of newborn dried blood spots reveals sex-specific associations with pediatric acute myeloid leukemia. Leukemia Research. 106: 106585. PMID 33971561 DOI: 10.1016/j.leukres.2021.106585 |
0.099 |
|
| 2017 |
Gadye L, Das D, Sanchez MA, Street K, Baudhuin A, Wagner A, Cole MB, Choi YG, Yosef N, Purdom E, Dudoit S, Risso D, Ngai J, Fletcher RB. Injury Activates Transient Olfactory Stem Cell States with Diverse Lineage Capacities. Cell Stem Cell. 21: 775-790.e9. PMID 29174333 DOI: 10.1016/J.Stem.2017.10.014 |
0.076 |
|
| 2017 |
Gadye L, Das D, Sanchez MA, Street K, Baudhuin A, Wagner A, Cole MB, Choi YG, Yosef N, Purdom E, Dudoit S, Risso D, Ngai J, Fletcher RB. Injury Activates Transient Olfactory Stem Cell States with Diverse Lineage Capacities. Cell Stem Cell. 21: 775-790.e9. PMID 29174333 DOI: 10.1016/J.Stem.2017.10.014 |
0.076 |
|
| 2021 |
Grigoryan H, Imani P, Dudoit S, Rappaport SM. Extending the HSA-Cys34-Adductomics Pipeline to Modifications at Lys525. Chemical Research in Toxicology. PMID 34788011 DOI: 10.1021/acs.chemrestox.1c00311 |
0.074 |
|
| 2020 |
Boileau P, Hejazi N, Dudoit S. scPCA: A toolbox for sparse contrastive principal component analysis in R Journal of Open Source Software. 5: 2079. DOI: 10.21105/joss.02079 |
0.063 |
|
| 2023 |
Grigoryan H, Imani P, Sacerdote C, Masala G, Grioni S, Tumino R, Chiodini P, Dudoit S, Vineis P, Rappaport SM. HSA Adductomics Reveals Sex Differences in NHL Incidence and Possible Involvement of Microbial Translocation. Cancer Epidemiology, Biomarkers & Prevention : a Publication of the American Association For Cancer Research, Cosponsored by the American Society of Preventive Oncology. PMID 37409972 DOI: 10.1158/1055-9965.EPI-23-0231 |
0.06 |
|
| 2018 |
Petrick L, Schiffman C, Edmands WM, Yano Y, Perttula K, Whitehead T, Metayer C, Carlsson H, Grigoryan H, Dudoit S, Rappaport S. Untargeted Metabolomics of Archived Dried Blood Spots Reveals Lipid Modulation at Birth Associated with Pediatric Acute Lymphoblastic Leukemia Isee Conference Abstracts. 2018. DOI: 10.1289/isesisee.2018.o03.03.21 |
0.025 |
|
| 2007 |
Barrier A, Boelle PY, Houry S, Dudoit S, Lemoine A. In reply [6] Journal of Clinical Oncology. 25: 2862-2863. DOI: 10.1200/JCO.2006.10.4596 |
0.01 |
|
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