| Year |
Citation |
Score |
| 2023 |
Eché C, Iampietro C, Birbes C, Dréau A, Kuchly C, Di Franco A, Klopp C, Faraut T, Djebali S, Castinel A, Zytnicki M, Denis E, Boussaha M, Grohs C, Boichard D, et al. A Bos taurus sequencing methods benchmark for assembly, haplotyping, and variant calling. Scientific Data. 10: 369. PMID 37291142 DOI: 10.1038/s41597-023-02249-1 |
0.332 |
|
| 2021 |
Denoyelle L, Talouarn E, Bardou P, Colli L, Alberti A, Danchin C, Del Corvo M, Engelen S, Orvain C, Palhière I, Rupp R, Sarry J, Salavati M, Amills M, Clark E, ... ... Faraut T, et al. VarGoats project: a dataset of 1159 whole-genome sequences to dissect Capra hircus global diversity. Genetics, Selection, Evolution : Gse. 53: 86. PMID 34749642 DOI: 10.1186/s12711-021-00659-6 |
0.325 |
|
| 2019 |
Foissac S, Djebali S, Munyard K, Vialaneix N, Rau A, Muret K, Esquerré D, Zytnicki M, Derrien T, Bardou P, Blanc F, Cabau C, Crisci E, Dhorne-Pollet S, Drouet F, ... Faraut T, et al. Multi-species annotation of transcriptome and chromatin structure in domesticated animals. Bmc Biology. 17: 108. PMID 31884969 DOI: 10.1186/S12915-019-0726-5 |
0.431 |
|
| 2017 |
Fève K, Foissac S, Pinton A, Mompart F, Esquerré D, Faraut T, Yerle M, Riquet J. Identification of a t(3;4)(p1.3;q1.5) translocation breakpoint in pigs using somatic cell hybrid mapping and high-resolution mate-pair sequencing. Plos One. 12: e0187617. PMID 29121641 DOI: 10.1371/Journal.Pone.0187617 |
0.386 |
|
| 2017 |
Badouin H, Gouzy J, Grassa CJ, Murat F, Staton SE, Cottret L, Lelandais-Brière C, Owens GL, Carrère S, Mayjonade B, Legrand L, Gill N, Kane NC, Bowers JE, Hubner S, ... ... Faraut T, et al. The sunflower genome provides insights into oil metabolism, flowering and Asterid evolution. Nature. 546: 148-152. PMID 28538728 DOI: 10.1038/Nature22380 |
0.429 |
|
| 2017 |
Fariello MI, Boitard S, Mercier S, Robelin D, Faraut T, Arnould C, Recoquillay J, Bouchez O, Salin G, Dehais P, Gourichon D, Leroux S, Pitel F, Leterrier C, SanCristobal M. Accounting for Linkage Disequilibrium in genome scans for selection without individual genotypes: the local score approach. Molecular Ecology. PMID 28394503 DOI: 10.1111/Mec.14141 |
0.38 |
|
| 2014 |
Jiang Y, Xie M, Chen W, Talbot R, Maddox JF, Faraut T, Wu C, Muzny DM, Li Y, Zhang W, Stanton JA, Brauning R, Barris WC, Hourlier T, Aken BL, et al. The sheep genome illuminates biology of the rumen and lipid metabolism. Science (New York, N.Y.). 344: 1168-73. PMID 24904168 DOI: 10.1126/Science.1252806 |
0.323 |
|
| 2014 |
Robic A, Faraut T, Prunier A. Pathways and genes involved in steroid hormone metabolism in male pigs: A review and update Journal of Steroid Biochemistry and Molecular Biology. 140: 44-55. PMID 24239507 DOI: 10.1016/J.Jsbmb.2013.11.001 |
0.339 |
|
| 2013 |
Huang Y, Li Y, Burt DW, Chen H, Zhang Y, Qian W, Kim H, Gan S, Zhao Y, Li J, Yi K, Feng H, Zhu P, Li B, Liu Q, ... ... Faraut T, et al. The duck genome and transcriptome provide insight into an avian influenza virus reservoir species. Nature Genetics. 45: 776-83. PMID 23749191 DOI: 10.1038/Ng.2657 |
0.314 |
|
| 2013 |
Sallet E, Roux B, Sauviac L, Jardinaud MF, Carrère S, Faraut T, De Carvalho-Niebel F, Gouzy J, Gamas P, Capela D, Bruand C, Schiex T. Next-generation annotation of prokaryotic genomes with EuGene-P: Application to sinorhizobium meliloti 2011 Dna Research. 20: 339-353. PMID 23599422 DOI: 10.1093/Dnares/Dst014 |
0.468 |
|
| 2013 |
Dong Y, Xie M, Jiang Y, Xiao N, Du X, Zhang W, Tosser-Klopp G, Wang J, Yang S, Liang J, Chen W, Chen J, Zeng P, Hou Y, Bian C, ... ... Faraut T, et al. Sequencing and automated whole-genome optical mapping of the genome of a domestic goat (Capra hircus). Nature Biotechnology. 31: 135-41. PMID 23263233 DOI: 10.1038/Nbt.2478 |
0.46 |
|
| 2012 |
Servin B, Faraut T, Iannuccelli N, Zelenika D, Milan D. High-resolution autosomal radiation hybrid maps of the pig genome and their contribution to the genome sequence assembly. Bmc Genomics. 13: 585. PMID 23153393 DOI: 10.1186/1471-2164-13-585 |
0.46 |
|
| 2012 |
Groenen MA, Archibald AL, Uenishi H, Tuggle CK, Takeuchi Y, Rothschild MF, Rogel-Gaillard C, Park C, Milan D, Megens HJ, Li S, Larkin DM, Kim H, Frantz LA, Caccamo M, ... ... Faraut T, et al. Analyses of pig genomes provide insight into porcine demography and evolution. Nature. 491: 393-8. PMID 23151582 DOI: 10.1038/Nature11622 |
0.446 |
|
| 2012 |
Rao M, Morisson M, Faraut T, Bardes S, Fève K, Labarthe E, Fillon V, Huang Y, Li N, Vignal A. A duck RH panel and its potential for assisting NGS genome assembly. Bmc Genomics. 13: 513. PMID 23020625 DOI: 10.1186/1471-2164-13-513 |
0.425 |
|
| 2012 |
Audemard E, Schiex T, Faraut T. Detecting long tandem duplications in genomic sequences. Bmc Bioinformatics. 13: 83. PMID 22568762 DOI: 10.1186/1471-2105-13-83 |
0.449 |
|
| 2011 |
Liaubet L, Lobjois V, Faraut T, Tircazes A, Benne F, Iannuccelli N, Pires J, Glénisson J, Robic A, Le Roy P, SanCristobal M, Cherel P. Genetic variability of transcript abundance in pig peri-mortem skeletal muscle: EQTL localized genes involved in stress response, cell death, muscle disorders and metabolism Bmc Genomics. 12. PMID 22053791 DOI: 10.1186/1471-2164-12-548 |
0.359 |
|
| 2010 |
Servin B, de Givry S, Faraut T. Statistical confidence measures for genome maps: application to the validation of genome assemblies. Bioinformatics (Oxford, England). 26: 3035-42. PMID 21076149 DOI: 10.1093/Bioinformatics/Btq598 |
0.44 |
|
| 2010 |
Archibald AL, Cockett NE, Dalrymple BP, Faraut T, Kijas JW, Maddox JF, McEwan JC, Hutton Oddy V, Raadsma HW, Wade C, Wang J, Wang W, Xun X. The sheep genome reference sequence: a work in progress. Animal Genetics. 41: 449-53. PMID 20809919 DOI: 10.1111/J.1365-2052.2010.02100.X |
0.423 |
|
| 2010 |
Abrouk M, Murat F, Pont C, Messing J, Jackson S, Faraut T, Tannier E, Plomion C, Cooke R, Feuillet C, Salse J. Palaeogenomics of plants: synteny-based modelling of extinct ancestors. Trends in Plant Science. 15: 479-87. PMID 20638891 DOI: 10.1016/J.Tplants.2010.06.001 |
0.407 |
|
| 2010 |
Pitel F, Faraut T, Bruneau G, Monget P. Is there a leptin gene in the chicken genome? Lessons from phylogenetics, bioinformatics and genomics. General and Comparative Endocrinology. 167: 1-5. PMID 19854194 DOI: 10.1016/J.Ygcen.2009.10.006 |
0.426 |
|
| 2009 |
Faraut T, Givry Sd, Hitte C, Lahbib-Mansais Y, Morisson M, Milan D, Schiex T, Servin B, Vignal A, Galibert F, Yerle M. Contribution of radiation hybrids to genome mapping in domestic animals. Cytogenetic and Genome Research. 126: 21-33. PMID 20016154 DOI: 10.1159/000245904 |
0.359 |
|
| 2009 |
Salse J, Abrouk M, Bolot S, Guilhot N, Courcelle E, Faraut T, Waugh R, Close TJ, Messing J, Feuillet C. Reconstruction of monocotelydoneous proto-chromosomes reveals faster evolution in plants than in animals. Proceedings of the National Academy of Sciences of the United States of America. 106: 14908-13. PMID 19706486 DOI: 10.1073/Pnas.0902350106 |
0.403 |
|
| 2009 |
Robic A, Faraut T, Liaubet L, Milan D. The carnitine acetyltransferase gene (CRAT): A characterization of porcine transcripts with insights into the 5′-end variants of mammalian transcripts and their possible sub-cellular localization Cellular and Molecular Biology Letters. 14: 90-99. PMID 18839069 DOI: 10.2478/S11658-008-0036-3 |
0.377 |
|
| 2008 |
Robic A, Faraut T, Liaubet L, Riquet J, Milan D, Lobjois V. Characterization of porcine ASB6 gene and transcripts-comparison of mammalian transcripts Animal Biotechnology. 19: 138-143. PMID 18607786 DOI: 10.1080/10495390801984721 |
0.312 |
|
| 2008 |
Faraut T. Addressing chromosome evolution in the whole-genome sequence era. Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. 16: 5-16. PMID 18293102 DOI: 10.1007/S10577-007-1208-0 |
0.388 |
|
| 2008 |
Courcelle E, Beausse Y, Letort S, Stahl O, Fremez R, Ngom-Bru C, Gouzy J, Faraut T. Narcisse: a mirror view of conserved syntenies. Nucleic Acids Research. 36: D485-90. PMID 17981845 DOI: 10.1093/Nar/Gkm805 |
0.443 |
|
| 2007 |
Enault F, Fremez R, Baranowski E, Faraut T. Alvira: comparative genomics of viral strains. Bioinformatics (Oxford, England). 23: 2178-9. PMID 17550913 DOI: 10.1093/Bioinformatics/Btm293 |
0.379 |
|
| 2007 |
Fremez R, Faraut T, Fichant G, Gouzy J, Quentin Y. Phylogenetic exploration of bacterial genomic rearrangements. Bioinformatics (Oxford, England). 23: 1172-4. PMID 17332021 DOI: 10.1093/Bioinformatics/Btm070 |
0.368 |
|
| 2007 |
Faraut T, Givry SD, Chabrier P, Derrien T, Galibert F, Hitte C, Schiex T. A comparative genome approach to marker ordering Bioinformatics. 23: 50-56. PMID 17237105 DOI: 10.1093/Bioinformatics/Btl321 |
0.387 |
|
| 2006 |
Lahbib-Mansais Y, Mompart F, Milan D, Leroux S, Faraut T, Delcros C, Yerle M. Evolutionary breakpoints through a high-resolution comparative map between porcine chromosomes 2 and 16 and human chromosomes. Genomics. 88: 504-12. PMID 16765019 DOI: 10.1016/J.Ygeno.2006.04.010 |
0.322 |
|
| 2006 |
Cavaillès P, Sergent V, Bisanz C, Papapietro O, Colacios C, Mas M, Subra JF, Lagrange D, Calise M, Appolinaire S, Faraut T, Druet P, Saoudi A, Bessieres MH, Pipy B, et al. The rat Toxo1 locus directs toxoplasmosis outcome and controls parasite proliferation and spreading by macrophage-dependent mechanisms. Proceedings of the National Academy of Sciences of the United States of America. 103: 744-9. PMID 16407112 DOI: 10.1073/Pnas.0506643103 |
0.35 |
|
| 2005 |
Morisson M, Leroux S, Jiguet-Jiglaire C, Assaf S, Pitel F, Lagarrigue S, Bardes S, Feve K, Faraut T, Milan D, Vignal A. A gene-based radiation hybrid map of chicken microchromosome 14: comparison to human and alignment to the assembled chicken sequence. Genetics, Selection, Evolution : Gse. 37: 229-51. PMID 16194526 DOI: 10.1186/1297-9686-37-3-229 |
0.376 |
|
| 2005 |
Lahbib-Mansais Y, Karlskov-Mortensen P, Mompart F, Milan D, Jørgensen CB, Cirera S, Gorodkin J, Faraut T, Yerle M, Fredholm M. A high-resolution comparative map between pig chromosome 17 and human chromosomes 4, 8, and 20: identification of synteny breakpoints. Genomics. 86: 405-13. PMID 16111857 DOI: 10.1016/J.Ygeno.2005.07.002 |
0.329 |
|
| 2004 |
Morisson M, Jiguet-Jiglaire C, Leroux S, Faraut T, Bardes S, Feve K, Genet C, Pitel F, Milan D, Vignal A. Development of a gene-based radiation hybrid map of chicken Chromosome 7 and comparison to human and mouse. Mammalian Genome : Official Journal of the International Mammalian Genome Society. 15: 732-9. PMID 15389321 DOI: 10.1007/S00335-004-3003-Y |
0.384 |
|
| 2004 |
Muller C, Denis M, Gentzbittel L, Faraut T. The Iccare web server: an attempt to merge sequence and mapping information for plant and animal species. Nucleic Acids Research. 32: W429-34. PMID 15215424 DOI: 10.1093/Nar/Gkh460 |
0.373 |
|
| 2004 |
Weil G, Heus K, Faraut T, Demongeot J. The cyclic genetic code as a constraint satisfaction problem Theoretical Computer Science. 322: 313-334. DOI: 10.1016/J.Tcs.2004.03.015 |
0.463 |
|
| 2003 |
Robic A, Faraut T, Iannuccelli N, Lahbib-Mansais Y, Cantegrel V, Alexander L, Milan D. A new contribution to the integration of human and porcine genome maps: 623 New points of homology Cytogenetic and Genome Research. 102: 100-108. PMID 14970687 DOI: 10.1159/000075733 |
0.415 |
|
| 2003 |
Claudel-Renard C, Chevalet C, Faraut T, Kahn D. Enzyme-specific profiles for genome annotation: PRIAM. Nucleic Acids Research. 31: 6633-9. PMID 14602924 DOI: 10.1093/Nar/Gkg847 |
0.378 |
|
| 2003 |
Demeure O, Renard C, Yerle M, Faraut T, Riquet J, Robic A, Schiex T, Rink A, Milan D. Rearranged gene order between pig and human in a QTL region on SSC 7 Mammalian Genome. 14: 71-80. PMID 12532270 DOI: 10.1007/S00335-002-3034-1 |
0.366 |
|
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