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Joost J.B. Keurentjes - Publications

Affiliations: 
University of Amsterdam, Amsterdam, Netherlands 
Area:
Biotechnology, Genomics, Plant physiology, Population genetics, Carbohydrate metabolism, Arabidopsis thaliana, Plant biotechnology, Quantitative trait loci
Website:
http://www.uva.nl/en/profile/k/e/j.j.b.keurentjes/j.j.b.keurentjes.html
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50 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Lardon R, Wijnker E, Keurentjes J, Geelen D. The genetic framework of shoot regeneration in Arabidopsis comprises master regulators and conditional fine-tuning factors. Communications Biology. 3: 549. PMID 33009513 DOI: 10.1038/s42003-020-01274-9  0.441
2017 Davila Olivas NH, Frago E, Thoen MP, Kloth KJ, Becker FF, van Loon JJ, Gort G, Keurentjes JJ, van Heerwaarden J, Dicke M. Natural variation in life-history strategy of Arabidopsis thaliana determines stress responses to drought and insects of different feeding guilds. Molecular Ecology. PMID 28295823 DOI: 10.1111/Mec.14100  0.366
2016 Nijveen H, Ligterink W, Keurentjes JJ, Loudet O, Long J, Sterken MG, Prins P, Hilhorst HW, de Ridder D, Kammenga JE, Snoek BL. AraQTL - Workbench and Archive for systems genetics in Arabidopsis thaliana. The Plant Journal : For Cell and Molecular Biology. PMID 27995664 DOI: 10.1111/Tpj.13457  0.546
2016 Thoen MP, Davila Olivas NH, Kloth KJ, Coolen S, Huang PP, Aarts MG, Bac-Molenaar JA, Bakker J, Bouwmeester HJ, Broekgaarden C, Bucher J, Busscher-Lange J, Cheng X, Fradin EF, Jongsma MA, ... ... Keurentjes JJ, et al. Genetic architecture of plant stress resistance: multi-trait genome-wide association mapping. The New Phytologist. PMID 27699793 DOI: 10.1111/Nph.14220  0.69
2016 Allwright MR, Payne A, Emiliani G, Milner S, Viger M, Rouse F, Keurentjes JJ, Bérard A, Wildhagen H, Faivre-Rampant P, Polle A, Morgante M, Taylor G. Biomass traits and candidate genes for bioenergy revealed through association genetics in coppiced European Populus nigra (L.). Biotechnology For Biofuels. 9: 195. PMID 27617034 DOI: 10.1186/S13068-016-0603-1  0.388
2016 Leskow CC, Kamenetzky L, Dominguez PG, Díaz Zirpolo JA, Obata T, Costa H, Martí M, Taboga O, Keurentjes J, Sulpice R, Ishihara H, Stitt M, Fernie AR, Carrari F. Allelic differences in a vacuolar invertase affect Arabidopsis growth at early plant development. Journal of Experimental Botany. PMID 27194734 DOI: 10.1093/Jxb/Erw185  0.499
2016 Groot MP, Kooke R, Knoben N, Vergeer P, Keurentjes JJ, Ouborg NJ, Verhoeven KJ. Effects of Multi-Generational Stress Exposure and Offspring Environment on the Expression and Persistence of Transgenerational Effects in Arabidopsis thaliana. Plos One. 11: e0151566. PMID 26982489 DOI: 10.1371/Journal.Pone.0151566  0.326
2016 Kooke R, Kruijer W, Bours R, Becker F, Kuhn A, van de Geest H, Buntjer J, Doeswijk T, Guerra J, Bouwmeester H, Vreugdenhil D, Keurentjes JJ. Genome-Wide Association Mapping and Genomic Prediction Elucidate the Genetic Architecture of Morphological Traits in Arabidopsis. Plant Physiology. 170: 2187-203. PMID 26869705 DOI: 10.1104/Pp.15.00997  0.551
2016 Bac-Molenaar JA, Granier C, Keurentjes JJ, Vreugdenhil D. Genome-wide association mapping of time-dependent growth responses to moderate drought stress in Arabidopsis. Plant, Cell & Environment. 39: 88-102. PMID 26138664 DOI: 10.1111/Pce.12595  0.5
2015 Broekgaarden C, Bucher J, Bac-Molenaar J, Keurentjes JJ, Kruijer W, Voorrips RE, Vosman B. Novel Genes Affecting the Interaction between the Cabbage Whitefly and Arabidopsis Uncovered by Genome-Wide Association Mapping. Plos One. 10: e0145124. PMID 26699853 DOI: 10.1371/Journal.Pone.0145124  0.561
2015 Bac-Molenaar JA, Fradin EF, Rienstra JA, Vreugdenhil D, Keurentjes JJ. GWA Mapping of Anthocyanin Accumulation Reveals Balancing Selection of MYB90 in Arabidopsis thaliana. Plos One. 10: e0143212. PMID 26588092 DOI: 10.1371/Journal.Pone.0143212  0.484
2015 Kooke R, Keurentjes JJ. Epigenetic variation contributes to environmental adaptation of Arabidopsis thaliana. Plant Signaling & Behavior. 10: e1057368. PMID 26237693 DOI: 10.1080/15592324.2015.1057368  0.49
2015 Bac-Molenaar JA, Fradin EF, Becker FF, Rienstra JA, van der Schoot J, Vreugdenhil D, Keurentjes JJ. Genome-Wide Association Mapping of Fertility Reduction upon Heat Stress Reveals Developmental Stage-Specific QTLs in Arabidopsis thaliana. The Plant Cell. 27: 1857-74. PMID 26163573 DOI: 10.1105/Tpc.15.00248  0.411
2015 Bac-Molenaar JA, Vreugdenhil D, Granier C, Keurentjes JJ. Genome-wide association mapping of growth dynamics detects time-specific and general quantitative trait loci. Journal of Experimental Botany. 66: 5567-80. PMID 25922493 DOI: 10.1093/Jxb/Erv176  0.45
2015 Kooke R, Johannes F, Wardenaar R, Becker F, Etcheverry M, Colot V, Vreugdenhil D, Keurentjes JJ. Epigenetic basis of morphological variation and phenotypic plasticity in Arabidopsis thaliana. The Plant Cell. 27: 337-48. PMID 25670769 DOI: 10.1105/Tpc.114.133025  0.481
2015 Kruijer W, Boer MP, Malosetti M, Flood PJ, Engel B, Kooke R, Keurentjes JJ, van Eeuwijk FA. Marker-based estimation of heritability in immortal populations. Genetics. 199: 379-98. PMID 25527288 DOI: 10.1534/Genetics.114.167916  0.492
2014 Wijnen CL, Keurentjes JJ. Genetic resources for quantitative trait analysis: novelty and efficiency in design from an Arabidopsis perspective. Current Opinion in Plant Biology. 18: 103-9. PMID 24657834 DOI: 10.1016/J.Pbi.2014.02.011  0.531
2014 Wijnker E, Deurhof L, van de Belt J, de Snoo CB, Blankestijn H, Becker F, Ravi M, Chan SW, van Dun K, Lelivelt CL, de Jong H, Dirks R, Keurentjes JJ. Hybrid recreation by reverse breeding in Arabidopsis thaliana. Nature Protocols. 9: 761-72. PMID 24603935 DOI: 10.1038/Nprot.2014.049  0.363
2014 Molenaar JA, Keurentjes JJ. Exploiting natural variation in Arabidopsis. Methods in Molecular Biology (Clifton, N.J.). 1062: 139-53. PMID 24057363 DOI: 10.1007/978-1-62703-580-4_6  0.55
2013 Wijnker E, Velikkakam James G, Ding J, Becker F, Klasen JR, Rawat V, Rowan BA, de Jong DF, de Snoo CB, Zapata L, Huettel B, de Jong H, Ossowski S, Weigel D, Koornneef M, ... Keurentjes JJ, et al. The genomic landscape of meiotic crossovers and gene conversions in Arabidopsis thaliana. Elife. 2: e01426. PMID 24347547 DOI: 10.7554/Elife.01426  0.598
2013 Barboza L, Effgen S, Alonso-Blanco C, Kooke R, Keurentjes JJ, Koornneef M, Alcázar R. Arabidopsis semidwarfs evolved from independent mutations in GA20ox1, ortholog to green revolution dwarf alleles in rice and barley. Proceedings of the National Academy of Sciences of the United States of America. 110: 15818-23. PMID 24023067 DOI: 10.1073/Pnas.1314979110  0.76
2013 Joosen RV, Arends D, Li Y, Willems LA, Keurentjes JJ, Ligterink W, Jansen RC, Hilhorst HW. Identifying genotype-by-environment interactions in the metabolism of germinating arabidopsis seeds using generalized genetical genomics. Plant Physiology. 162: 553-66. PMID 23606598 DOI: 10.1104/Pp.113.216176  0.504
2013 Carreno-Quintero N, Bouwmeester HJ, Keurentjes JJ. Genetic analysis of metabolome-phenotype interactions: from model to crop species. Trends in Genetics : Tig. 29: 41-50. PMID 23084137 DOI: 10.1016/J.Tig.2012.09.006  0.52
2013 Bagheri H, Pino-Del-Carpio D, Hahnart C, Bonnema G, Keurentjes J, Aarts MGM. Identification of seed-related QTL in Brassica rapa Spanish Journal of Agricultural Research. 11: 1085. DOI: 10.5424/Sjar/2013114-4160  0.412
2012 Bagheri H, El-Soda M, van Oorschot I, Hanhart C, Bonnema G, Jansen-van den Bosch T, Mank R, Keurentjes JJ, Meng L, Wu J, Koornneef M, Aarts MG. Genetic analysis of morphological traits in a new, versatile, rapid-cycling Brassica rapa recombinant inbred line population. Frontiers in Plant Science. 3: 183. PMID 22912644 DOI: 10.3389/Fpls.2012.00183  0.775
2012 Kooke R, Wijnker E, Keurentjes JJ. Backcross populations and near isogenic lines. Methods in Molecular Biology (Clifton, N.J.). 871: 3-16. PMID 22565829 DOI: 10.1007/978-1-61779-785-9_1  0.382
2012 Wijnker E, van Dun K, de Snoo CB, Lelivelt CL, Keurentjes JJ, Naharudin NS, Ravi M, Chan SW, de Jong H, Dirks R. Reverse breeding in Arabidopsis thaliana generates homozygous parental lines from a heterozygous plant. Nature Genetics. 44: 467-70. PMID 22406643 DOI: 10.1038/Ng.2203  0.412
2012 Carreno-Quintero N, Acharjee A, Maliepaard C, Bachem CW, Mumm R, Bouwmeester H, Visser RG, Keurentjes JJ. Untargeted metabolic quantitative trait loci analyses reveal a relationship between primary metabolism and potato tuber quality. Plant Physiology. 158: 1306-18. PMID 22223596 DOI: 10.1104/Pp.111.188441  0.487
2011 Keurentjes JJ, Angenent GC, Dicke M, Dos Santos VA, Molenaar J, van der Putten WH, de Ruiter PC, Struik PC, Thomma BP. Redefining plant systems biology: from cell to ecosystem. Trends in Plant Science. 16: 183-90. PMID 21215676 DOI: 10.1016/J.Tplants.2010.12.002  0.373
2010 Macel M, Van Dam NM, Keurentjes JJ. Metabolomics: the chemistry between ecology and genetics. Molecular Ecology Resources. 10: 583-93. PMID 21565063 DOI: 10.1111/J.1755-0998.2010.02854.X  0.485
2010 Terpstra IR, Snoek LB, Keurentjes JJ, Peeters AJ, van den Ackerveken G. Regulatory network identification by genetical genomics: signaling downstream of the Arabidopsis receptor-like kinase ERECTA. Plant Physiology. 154: 1067-78. PMID 20833726 DOI: 10.1104/Pp.110.159996  0.494
2010 Stitt M, Sulpice R, Keurentjes J. Metabolic Networks: How to Identify Key Components in the Regulation of Metabolism and Growth Plant Physiology. 152: 428-444. PMID 20018593 DOI: 10.1104/Pp.109.150821  0.371
2009 Joosen RV, Ligterink W, Hilhorst HW, Keurentjes JJ. Advances in genetical genomics of plants. Current Genomics. 10: 540-9. PMID 20514216 DOI: 10.2174/138920209789503914  0.573
2009 Keurentjes JJ, Sulpice R. The role of natural variation in dissecting genetic regulation of primary metabolism. Plant Signaling & Behavior. 4: 244-6. PMID 19721763 DOI: 10.4161/Psb.4.3.7956  0.479
2009 Alonso-Blanco C, Aarts MG, Bentsink L, Keurentjes JJ, Reymond M, Vreugdenhil D, Koornneef M. What has natural variation taught us about plant development, physiology, and adaptation? The Plant Cell. 21: 1877-96. PMID 19574434 DOI: 10.1105/Tpc.109.068114  0.736
2009 Sulpice R, Pyl ET, Ishihara H, Trenkamp S, Steinfath M, Witucka-Wall H, Gibon Y, Usadel B, Poree F, Piques MC, Von Korff M, Steinhauser MC, Keurentjes JJ, Guenther M, Hoehne M, et al. Starch as a major integrator in the regulation of plant growth. Proceedings of the National Academy of Sciences of the United States of America. 106: 10348-53. PMID 19506259 DOI: 10.1073/Pnas.0903478106  0.45
2009 Fu J, Keurentjes JJ, Bouwmeester H, America T, Verstappen FW, Ward JL, Beale MH, de Vos RC, Dijkstra M, Scheltema RA, Johannes F, Koornneef M, Vreugdenhil D, Breitling R, Jansen RC. System-wide molecular evidence for phenotypic buffering in Arabidopsis. Nature Genetics. 41: 166-7. PMID 19169256 DOI: 10.1038/Ng.308  0.624
2009 Keurentjes JJ. Genetical metabolomics: closing in on phenotypes. Current Opinion in Plant Biology. 12: 223-30. PMID 19162531 DOI: 10.1016/J.Pbi.2008.12.003  0.508
2008 Keurentjes JJ, Sulpice R, Gibon Y, Steinhauser MC, Fu J, Koornneef M, Stitt M, Vreugdenhil D. Integrative analyses of genetic variation in enzyme activities of primary carbohydrate metabolism reveal distinct modes of regulation in Arabidopsis thaliana. Genome Biology. 9: R129. PMID 18710526 DOI: 10.1186/Gb-2008-9-8-R129  0.645
2008 Keurentjes JJ, Koornneef M, Vreugdenhil D. Quantitative genetics in the age of omics. Current Opinion in Plant Biology. 11: 123-8. PMID 18325828 DOI: 10.1016/J.Pbi.2008.01.006  0.623
2008 Sicard O, Loudet O, Keurentjes JJ, Candresse T, Le Gall O, Revers F, Decroocq V. Identification of quantitative trait loci controlling symptom development during viral infection in Arabidopsis thaliana. Molecular Plant-Microbe Interactions : Mpmi. 21: 198-207. PMID 18184064 DOI: 10.1094/Mpmi-21-2-0198  0.374
2007 De Vos RC, Moco S, Lommen A, Keurentjes JJ, Bino RJ, Hall RD. Untargeted large-scale plant metabolomics using liquid chromatography coupled to mass spectrometry. Nature Protocols. 2: 778-91. PMID 17446877 DOI: 10.1038/Nprot.2007.95  0.317
2007 Fu J, Swertz MA, Keurentjes JJ, Jansen RC. MetaNetwork: a computational protocol for the genetic study of metabolic networks. Nature Protocols. 2: 685-94. PMID 17406631 DOI: 10.1038/Nprot.2007.96  0.393
2007 Keurentjes JJ, Fu J, Terpstra IR, Garcia JM, van den Ackerveken G, Snoek LB, Peeters AJ, Vreugdenhil D, Koornneef M, Jansen RC. Regulatory network construction in Arabidopsis by using genome-wide gene expression quantitative trait loci. Proceedings of the National Academy of Sciences of the United States of America. 104: 1708-13. PMID 17237218 DOI: 10.1073/Pnas.0610429104  0.687
2007 Keurentjes JJ, Bentsink L, Alonso-Blanco C, Hanhart CJ, Blankestijn-De Vries H, Effgen S, Vreugdenhil D, Koornneef M. Development of a near-isogenic line population of Arabidopsis thaliana and comparison of mapping power with a recombinant inbred line population. Genetics. 175: 891-905. PMID 17179089 DOI: 10.1534/Genetics.106.066423  0.748
2006 Keurentjes JJ, Fu J, de Vos CH, Lommen A, Hall RD, Bino RJ, van der Plas LH, Jansen RC, Vreugdenhil D, Koornneef M. The genetics of plant metabolism. Nature Genetics. 38: 842-9. PMID 16751770 DOI: 10.1038/Ng1815  0.654
2006 Sergeeva LI, Keurentjes JJ, Bentsink L, Vonk J, van der Plas LH, Koornneef M, Vreugdenhil D. Vacuolar invertase regulates elongation of Arabidopsis thaliana roots as revealed by QTL and mutant analysis. Proceedings of the National Academy of Sciences of the United States of America. 103: 2994-9. PMID 16481625 DOI: 10.1073/Pnas.0511015103  0.76
2005 Teng S, Keurentjes J, Bentsink L, Koornneef M, Smeekens S. Sucrose-specific induction of anthocyanin biosynthesis in Arabidopsis requires the MYB75/PAP1 gene. Plant Physiology. 139: 1840-52. PMID 16299184 DOI: 10.1104/Pp.105.066688  0.772
2005 Léon-Kloosterziel KM, Verhagen BW, Keurentjes JJ, VanPelt JA, Rep M, VanLoon LC, Pieterse CM. Colonization of the Arabidopsis rhizosphere by fluorescent Pseudomonas spp. activates a root-specific, ethylene-responsive PR-5 gene in the vascular bundle. Plant Molecular Biology. 57: 731-48. PMID 15988566 DOI: 10.1007/S11103-005-3097-Y  0.385
2004 Sergeeva LI, Vonk J, Keurentjes JJ, van der Plas LH, Koornneef M, Vreugdenhil D. Histochemical analysis reveals organ-specific quantitative trait loci for enzyme activities in Arabidopsis. Plant Physiology. 134: 237-45. PMID 14671010 DOI: 10.1104/Pp.103.027615  0.651
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