| Year |
Citation |
Score |
| 2024 |
Fernandez-Calvo A, Reifs A, Saa L, Cortajarena AL, De Sancho D, Perez-Jimenez R. The strongest protein binder is surprisingly labile. Protein Science : a Publication of the Protein Society. 33: e5030. PMID 38864696 DOI: 10.1002/pro.5030 |
0.414 |
|
| 2024 |
Reifs A, Fernandez-Calvo A, Alonso-Lerma B, Schönfelder J, Franco D, Ortega-Muñoz M, Casares S, Jimenez-Lopez C, Saa L, Cortajarena AL, De Sancho D, San Sebastian E, Perez-Jimenez R. High-throughput virtual search of small molecules for controlling the mechanical stability of human CD4. The Journal of Biological Chemistry. 300: 107133. PMID 38432632 DOI: 10.1016/j.jbc.2024.107133 |
0.36 |
|
| 2022 |
Herrero-Galán E, Martínez-Martín I, Sánchez-González C, Vicente N, Bonzón-Kulichenko E, Calvo E, Suay-Corredera C, Pricolo MR, Fernández-Trasancos Á, Velázquez-Carreras D, Careaga CB, Abdellatif M, Sedej S, Rainer PP, Giganti D, et al. Basal oxidation of conserved cysteines modulates cardiac titin stiffness and dynamics. Redox Biology. 52: 102306. PMID 35367810 DOI: 10.1016/j.redox.2022.102306 |
0.657 |
|
| 2022 |
Peters DT, Reifs A, Alonso-Caballero A, Madkour A, Waller H, Kenny B, Perez-Jimenez R, Lakey JH. Unraveling the molecular determinants of the anti-phagocytic protein cloak of plague bacteria. Plos Pathogens. 18: e1010447. PMID 35358289 DOI: 10.1371/journal.ppat.1010447 |
0.769 |
|
| 2022 |
Schönfelder J, Alonso-Caballero A, Perez-Jimenez R. Mechanochemical Evolution of Disulfide Bonds in Proteins. Methods in Molecular Biology (Clifton, N.J.). 2376: 283-300. PMID 34845615 DOI: 10.1007/978-1-0716-1716-8_15 |
0.812 |
|
| 2020 |
Corsetti F, Alonso-Caballero A, Poly S, Perez-Jimenez R, Artacho E. Entropic bonding of the type 1 pilus from experiment and simulation. Royal Society Open Science. 7: 200183. PMID 32431906 DOI: 10.1098/Rsos.200183 |
0.771 |
|
| 2018 |
De Sancho D, Schönfelder J, Best RB, Perez-Jimenez R, Muñoz V. Instrumental Effects in the Dynamics of an Ultrafast Folding Protein under Mechanical Force. The Journal of Physical Chemistry. B. PMID 30129367 DOI: 10.1021/Acs.Jpcb.8B05975 |
0.503 |
|
| 2018 |
Alonso-Caballero A, Schönfelder J, Poly S, Corsetti F, De Sancho D, Artacho E, Perez-Jimenez R. Mechanical architecture and folding of E. coli type 1 pilus domains. Nature Communications. 9: 2758. PMID 30013059 DOI: 10.1038/S41467-018-05107-6 |
0.78 |
|
| 2018 |
Schönfelder J, Alonso-Caballero A, De Sancho D, Perez-Jimenez R. The life of proteins under mechanical force. Chemical Society Reviews. PMID 29473060 DOI: 10.1039/C7Cs00820A |
0.813 |
|
| 2017 |
Manteca A, Schönfelder J, Alonso-Caballero A, Fertin MJ, Barruetabeña N, Faria BF, Herrero-Galán E, Alegre-Cebollada J, De Sancho D, Perez-Jimenez R. Mechanochemical evolution of the giant muscle protein titin as inferred from resurrected proteins. Nature Structural & Molecular Biology. 24: 652-657. PMID 28671667 DOI: 10.1038/Nsmb.3426 |
0.772 |
|
| 2017 |
Manteca A, Alonso-Caballero Á, Fertin M, Poly S, De Sancho D, Perez-Jimenez R. The influence of disulfide bonds on the mechanical stability of proteins is context dependent. The Journal of Biological Chemistry. 292: 13374-13380. PMID 28642368 DOI: 10.1074/Jbc.M117.784934 |
0.811 |
|
| 2017 |
Alonso-Caballero A, Perez-Jimenez R. Mechanical Architecture and Genesis of Bacterial Pilus Domains Revealed by Single-Molecule Force Spectroscopy Biophysical Journal. 112: 490a. DOI: 10.1016/J.Bpj.2016.11.2654 |
0.8 |
|
| 2016 |
Schönfelder J, De Sancho D, Perez-Jimenez R. The Power of Force: Insights into the Protein Folding Process Using Single-Molecule Force Spectroscopy. Journal of Molecular Biology. 428: 4245-4257. PMID 27639437 DOI: 10.1016/J.Jmb.2016.09.006 |
0.501 |
|
| 2016 |
Schönfelder J, Perez-Jimenez R, Muñoz V. A simple two-state protein unfolds mechanically via multiple heterogeneous pathways at single-molecule resolution. Nature Communications. 7: 11777. PMID 27248054 DOI: 10.1038/Ncomms11777 |
0.492 |
|
| 2016 |
Perez-Jimenez R, Manteca A, Sancho DD, Herrero-Galán E, Cebollada JA. Mechanochemical Evolution of the Giant Muscle Protein Titin as Inferred from Ancient Proteins Biophysical Journal. 110: 14. DOI: 10.1016/J.Bpj.2015.11.133 |
0.49 |
|
| 2015 |
Kahn TB, Fernández JM, Perez-Jimenez R. Monitoring Oxidative Folding of a Single Protein Catalyzed by the Disulfide Oxidoreductase DsbA. The Journal of Biological Chemistry. 290: 14518-27. PMID 25897077 DOI: 10.1074/Jbc.M115.646000 |
0.723 |
|
| 2014 |
Perez-Jimenez R, Alonso-Caballero A, Berkovich R, Franco D, Chen MW, Richard P, Badilla CL, Fernandez JM. Probing the effect of force on HIV-1 receptor CD4. Acs Nano. 8: 10313-20. PMID 25299596 DOI: 10.1021/Nn503557W |
0.766 |
|
| 2014 |
Kahn TB, Fernandez JM, Perez-Jimenez R. Placeholder Mechanism of Catalyzed Oxidative Folding is Conserved Across Multiple Domains of Life Biophysical Journal. 106: 6-8. DOI: 10.1016/J.Bpj.2013.11.3753 |
0.397 |
|
| 2013 |
Ingles-Prieto A, Ibarra-Molero B, Delgado-Delgado A, Perez-Jimenez R, Fernandez JM, Gaucher EA, Sanchez-Ruiz JM, Gavira JA. Conservation of protein structure over four billion years Structure. 21: 1690-1697. PMID 23932589 DOI: 10.1016/J.Str.2013.06.020 |
0.688 |
|
| 2013 |
Javadi Y, Fernandez JM, Perez-Jimenez R. Protein folding under mechanical forces: a physiological view. Physiology (Bethesda, Md.). 28: 9-17. PMID 23280353 DOI: 10.1152/Physiol.00017.2012 |
0.757 |
|
| 2011 |
Naganathan AN, Perez-Jimenez R, Muñoz V, Sanchez-Ruiz JM. Estimation of protein folding free energy barriers from calorimetric data by multi-model Bayesian analysis. Physical Chemistry Chemical Physics : Pccp. 13: 17064-76. PMID 21769353 DOI: 10.1039/C1Cp20156E |
0.353 |
|
| 2011 |
Perez-Jimenez R, Inglés-Prieto A, Zhao ZM, Sanchez-Romero I, Alegre-Cebollada J, Kosuri P, Garcia-Manyes S, Kappock TJ, Tanokura M, Holmgren A, Sanchez-Ruiz JM, Gaucher EA, Fernandez JM. Single-molecule paleoenzymology probes the chemistry of resurrected enzymes. Nature Structural & Molecular Biology. 18: 592-6. PMID 21460845 DOI: 10.1038/Nsmb.2020 |
0.789 |
|
| 2010 |
Naganathan AN, Li P, Perez-Jimenez R, Sanchez-Ruiz JM, Muñoz V. Navigating the downhill protein folding regime via structural homologues. Journal of the American Chemical Society. 132: 11183-90. PMID 20698685 DOI: 10.1021/Ja103612Q |
0.412 |
|
| 2010 |
Rodriguez-Larrea D, Perez-Jimenez R, Sanchez-Romero I, Delgado-Delgado A, Fernandez JM, Sanchez-Ruiz JM. Role of conservative mutations in protein multi-property adaptation. The Biochemical Journal. 429: 243-9. PMID 20446918 DOI: 10.1042/Bj20100386 |
0.73 |
|
| 2010 |
Alegre-Cebollada J, Perez-Jimenez R, Kosuri P, Fernandez JM. Single-molecule force spectroscopy approach to enzyme catalysis. The Journal of Biological Chemistry. 285: 18961-6. PMID 20382731 DOI: 10.1074/Jbc.R109.011932 |
0.815 |
|
| 2010 |
Perez-Jimenez R, Inglés-Prieto A, Sanchez-Romero I, Alegre-Cebollada J, Kosuri P, Garcia-Mañes S, Gaucher E, Sanchez-Ruiz JM, Fernandez JM. Paleoenzymology at the Single-Molecule Level: Probing the Chemistry of Resurrected Enzymes with Force-Clamp Spectroscopy Biophysical Journal. 98: 617a. DOI: 10.1016/J.Bpj.2009.12.3368 |
0.837 |
|
| 2009 |
Perez-Jimenez R, Li J, Kosuri P, Sanchez-Romero I, Wiita AP, Rodriguez-Larrea D, Chueca A, Holmgren A, Miranda-Vizuete A, Becker K, Cho SH, Beckwith J, Gelhaye E, Jacquot JP, Gaucher EA, et al. Diversity of chemical mechanisms in thioredoxin catalysis revealed by single-molecule force spectroscopy. Nature Structural & Molecular Biology. 16: 890-6. PMID 19597482 DOI: 10.1038/Nsmb.1627 |
0.833 |
|
| 2009 |
Sadqi M, de Alba E, Pérez-Jiménez R, Sanchez-Ruiz JM, Muñoz V. A designed protein as experimental model of primordial folding. Proceedings of the National Academy of Sciences of the United States of America. 106: 4127-32. PMID 19240216 DOI: 10.1073/Pnas.0812108106 |
0.411 |
|
| 2009 |
del Rio A, Perez-Jimenez R, Liu R, Roca-Cusachs P, Fernandez JM, Sheetz MP. Stretching single talin rod molecules activates vinculin binding. Science (New York, N.Y.). 323: 638-41. PMID 19179532 DOI: 10.1126/Science.1162912 |
0.746 |
|
| 2009 |
Sadqi M, Alba Ed, Perez-Jimenez R, Sanchez-Ruiz JM, Munoz V. Protein folding on a highly rugged landscape: Experimental observation of glassy dynamics and structural frustration Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.2210/Pdb2K6R/Pdb |
0.362 |
|
| 2009 |
Perez-Jimenez R, Li J, Kosuri P, Berne BJ, Fernandez JM. Chemical Diversity and Origin of Thioredoxin Catalysis Revealed by Force-clamp Spectroscopy Biophysical Journal. 96: 643a. DOI: 10.1016/J.Bpj.2008.12.3402 |
0.8 |
|
| 2009 |
Rodriguez-Larrea D, Perez-Jimenez R, Sanchez-Romero I, Arco-Gonzalez R, Delgado A, Fernandez JM, Sanchez-Ruiz JM. Super-proteins From Fitness-threshold Selection Statistics Biophysical Journal. 96. DOI: 10.1016/J.Bpj.2008.12.3098 |
0.721 |
|
| 2008 |
Perez-Jimenez R, Wiita AP, Rodriguez-Larrea D, Kosuri P, Gavira JA, Sanchez-Ruiz JM, Fernandez JM. Force-clamp spectroscopy detects residue co-evolution in enzyme catalysis. The Journal of Biological Chemistry. 283: 27121-9. PMID 18687682 DOI: 10.1074/Jbc.M803746200 |
0.801 |
|
| 2008 |
Halskau O, Perez-Jimenez R, Ibarra-Molero B, Underhaug J, Muñoz V, Martinez A, Sanchez-Ruiz JM. Large-scale modulation of thermodynamic protein folding barriers linked to electrostatics. Proceedings of the National Academy of Sciences of the United States of America. 105: 8625-30. PMID 18550823 DOI: 10.1073/Pnas.0709881105 |
0.412 |
|
| 2008 |
Szoszkiewicz R, Ainavarapu SR, Wiita AP, Perez-Jimenez R, Sanchez-Ruiz JM, Fernandez JM. Dwell time analysis of a single-molecule mechanochemical reaction. Langmuir : the Acs Journal of Surfaces and Colloids. 24: 1356-64. PMID 17999545 DOI: 10.1021/La702368B |
0.789 |
|
| 2007 |
Wiita AP, Perez-Jimenez R, Walther KA, Gräter F, Berne BJ, Holmgren A, Sanchez-Ruiz JM, Fernandez JM. Probing the chemistry of thioredoxin catalysis with force. Nature. 450: 124-7. PMID 17972886 DOI: 10.1038/Nature06231 |
0.802 |
|
| 2006 |
Perez-Jimenez R, Garcia-Manyes S, Ainavarapu SR, Fernandez JM. Mechanical unfolding pathways of the enhanced yellow fluorescent protein revealed by single molecule force spectroscopy. The Journal of Biological Chemistry. 281: 40010-4. PMID 17082195 DOI: 10.1074/Jbc.M609890200 |
0.787 |
|
| 2006 |
Godoy-Ruiz R, Ariza F, Rodriguez-Larrea D, Perez-Jimenez R, Ibarra-Molero B, Sanchez-Ruiz JM. Natural selection for kinetic stability is a likely origin of correlations between mutational effects on protein energetics and frequencies of amino acid occurrences in sequence alignments. Journal of Molecular Biology. 362: 966-78. PMID 16935299 DOI: 10.1016/J.Jmb.2006.07.065 |
0.364 |
|
| 2006 |
Perez-Jimenez R, Godoy-Ruiz R, Parody-Morreale A, Ibarra-Molero B, Sanchez-Ruiz JM. A simple tool to explore the distance distribution of correlated mutations in proteins. Biophysical Chemistry. 119: 240-6. PMID 16239060 DOI: 10.1016/J.Bpc.2005.09.010 |
0.328 |
|
| 2005 |
Lidón-Moya MC, Barrera FN, Bueno M, Pérez-Jiménez R, Sancho J, Mateu MG, Neira JL. An extensive thermodynamic characterization of the dimerization domain of the HIV-1 capsid protein. Protein Science : a Publication of the Protein Society. 14: 2387-404. PMID 16131662 DOI: 10.1110/Ps.041324305 |
0.309 |
|
| 2005 |
Godoy-Ruiz R, Perez-Jimenez R, Ibarra-Molero B, Sanchez-Ruiz JM. A stability pattern of protein hydrophobic mutations that reflects evolutionary structural optimization. Biophysical Journal. 89: 3320-31. PMID 16100262 DOI: 10.1529/Biophysj.105.067025 |
0.317 |
|
| 2005 |
Naganathan AN, Perez-Jimenez R, Sanchez-Ruiz JM, Muñoz V. Robustness of downhill folding: guidelines for the analysis of equilibrium folding experiments on small proteins. Biochemistry. 44: 7435-49. PMID 15895987 DOI: 10.1021/Bi050118Y |
0.369 |
|
| 2005 |
Godoy-Ruiz R, Perez-Jimenez R, Garcia-Mira MM, Plaza del Pino IM, Sanchez-Ruiz JM. Empirical parametrization of pK values for carboxylic acids in proteins using a genetic algorithm. Biophysical Chemistry. 115: 263-6. PMID 15752616 DOI: 10.1016/J.Bpc.2004.12.028 |
0.343 |
|
| 2005 |
Perez-Jimenez R, Godoy-Ruiz R, Ibarra-Molero B, Sanchez-Ruiz JM. The effect of charge-introduction mutations on E. coli thioredoxin stability. Biophysical Chemistry. 115: 105-7. PMID 15752590 DOI: 10.1016/J.Bpc.2004.12.012 |
0.319 |
|
| 2004 |
Godoy-Ruiz R, Perez-Jimenez R, Ibarra-Molero B, Sanchez-Ruiz JM. Relation between protein stability, evolution and structure, as probed by carboxylic acid mutations. Journal of Molecular Biology. 336: 313-8. PMID 14757046 DOI: 10.1016/J.Jmb.2003.12.048 |
0.332 |
|
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