| Year |
Citation |
Score |
| 2023 |
Ishiguro A, Ishihama A. ALS-linked TDP-43 mutations interfere with the recruitment of RNA recognition motifs to G-quadruplex RNA. Scientific Reports. 13: 5982. PMID 37046025 DOI: 10.1038/s41598-023-33172-5 |
0.306 |
|
| 2021 |
Shimada T, Furuhata S, Ishihama A. Whole set of constitutive promoters for RpoN sigma factor and the regulatory role of its enhancer protein NtrC in K-12. Microbial Genomics. 7. PMID 34787538 DOI: 10.1099/mgen.0.000653 |
0.35 |
|
| 2021 |
Ishihama A, Shimada T. Hierarchy of transcription factor network in Escherichia coli K-12: H-NS-mediated silencing and Anti-silencing by global regulators. Fems Microbiology Reviews. PMID 34196371 DOI: 10.1093/femsre/fuab032 |
0.335 |
|
| 2020 |
Ogasawara H, Ishizuka T, Hotta S, Aoki M, Shimada T, Ishihama A. Novel regulators of the gene encoding the master regulator of biofilm formation in K-12. Microbiology (Reading, England). PMID 32649279 DOI: 10.1099/Mic.0.000947 |
0.387 |
|
| 2020 |
Ishiguro A, Kimura N, Noma T, Shimo-Kon R, Ishihama A, Kon T. Molecular dissection of ALS-linked TDP-43: involvement of the Gly-rich domain in interaction with G-quadruplex mRNA. Febs Letters. PMID 32337711 DOI: 10.1002/1873-3468.13800 |
0.422 |
|
| 2020 |
Sakamoto A, Sahara J, Kawai G, Yamamoto K, Ishihama A, Uemura T, Igarashi K, Kashiwagi K, Terui Y. Cytotoxic Mechanism of Excess Polyamines Functions through Translational Repression of Specific Proteins Encoded by Polyamine Modulon. International Journal of Molecular Sciences. 21. PMID 32244348 DOI: 10.3390/Ijms21072406 |
0.379 |
|
| 2019 |
Shimada T, Yokoyama Y, Anzai T, Yamamoto K, Ishihama A. Regulatory Role of PlaR (YiaJ) for Plant Utilization in Escherichia coli K-12. Scientific Reports. 9: 20415. PMID 31892694 DOI: 10.1038/S41598-019-56886-X |
0.307 |
|
| 2019 |
Yoshida H, Wada A, Shimada T, Maki Y, Ishihama A. Coordinated Regulation of Rsd and RMF for Simultaneous Hibernation of Transcription Apparatus and Translation Machinery in Stationary-Phase . Frontiers in Genetics. 10: 1153. PMID 31867037 DOI: 10.3389/Fgene.2019.01153 |
0.451 |
|
| 2019 |
Ogasawara H, Ishizuka T, Yamaji K, Kato Y, Shimada T, Ishihama A. Regulatory Role of Pyruvate-Sensing BtsSR in Biofilm Formation by Escherichia coli K-12. Fems Microbiology Letters. PMID 31834370 DOI: 10.1093/Femsle/Fnz251 |
0.372 |
|
| 2019 |
Miyake Y, Inaba T, Watanabe H, Teramoto J, Yamamoto K, Ishihama A. Regulatory Roles of Pyruvate-Sensing Two-Component System PyrSR (YpdAB) in Escherichia coli K-12. Fems Microbiology Letters. PMID 30624637 DOI: 10.1093/Femsle/Fnz009 |
0.355 |
|
| 2018 |
Shimada T, Yamamoto K, Nakano M, Watanabe H, Schleheck D, Ishihama A. Regulatory role of CsqR (YihW) in transcription of the genes for catabolism of the anionic sugar sulfoquinovose (SQ) in Escherichia coli K-12. Microbiology (Reading, England). PMID 30372406 DOI: 10.1099/Mic.0.000740 |
0.443 |
|
| 2018 |
Yoshida H, Shimada T, Ishihama A. Coordinated Hibernation of Transcriptional and Translational Apparatus during Growth Transition of Escherichia coli to Stationary Phase. Msystems. 3. PMID 30225374 DOI: 10.1128/mSystems.00057-18 |
0.345 |
|
| 2018 |
Shimada T, Ogasawara H, Ishihama A. Genomic SELEX Screening of Regulatory Targets of Escherichia coli Transcription Factors. Methods in Molecular Biology (Clifton, N.J.). 1837: 49-69. PMID 30109605 DOI: 10.1007/978-1-4939-8675-0_4 |
0.422 |
|
| 2018 |
Yamanaka Y, Winardhi RS, Yamauchi E, Nishiyama SI, Sowa Y, Yan J, Kawagishi I, Ishihama A, Yamamoto K. The dimerization site-2 of the bacterial DNA-binding protein H-NS is required for gene silencing and stiffened nucleoprotein filament formation. The Journal of Biological Chemistry. PMID 29695505 DOI: 10.1074/Jbc.Ra117.001425 |
0.398 |
|
| 2018 |
Shimada T, Ogasawara H, Ishihama A. Single-target regulators form a minor group of transcription factors in Escherichia coli K-12. Nucleic Acids Research. 46: 3921-3936. PMID 29529243 DOI: 10.1093/Nar/Gky138 |
0.355 |
|
| 2018 |
Yamamoto K, Yamanaka Y, Shimada T, Sarkar P, Yoshida M, Bhardwaj N, Watanabe H, Taira Y, Chatterji D, Ishihama A. Altered Distribution of RNA Polymerase Lacking the Omega Subunit within the Prophages along theK-12 Genome. Msystems. 3. PMID 29468196 DOI: 10.1128/mSystems.00172-17 |
0.402 |
|
| 2018 |
Ishihama A. Building a complete image of genome regulation in the model organism Escherichia coli. The Journal of General and Applied Microbiology. 63: 311-324. PMID 28904250 DOI: 10.2323/Jgam.2017.01.002 |
0.419 |
|
| 2017 |
Shimada T, Momiyama E, Yamanaka Y, Watanabe H, Yamamoto K, Ishihama A. Regulatory role of XynR (YagI) in catabolism of xylonate in Escherichia coli K-12. Fems Microbiology Letters. PMID 29087459 DOI: 10.1093/Femsle/Fnx220 |
0.409 |
|
| 2017 |
Shimada T, Tanaka K, Ishihama A. The whole set of the constitutive promoters recognized by four minor sigma subunits of Escherichia coli RNA polymerase. Plos One. 12: e0179181. PMID 28666008 DOI: 10.1371/Journal.Pone.0179181 |
0.498 |
|
| 2017 |
Sugino H, Usui T, Shimada T, Nakano M, Ogasawara H, Ishihama A, Hirata A. A structural sketch of RcdA, a transcription factor controlling the master regulator of biofilm formation. Febs Letters. 591: 2019-2031. PMID 28608551 DOI: 10.1002/1873-3468.12713 |
0.383 |
|
| 2016 |
Takada H, Shimada T, Dey D, Quyyum MZ, Nakano M, Ishiguro A, Yoshida H, Yamamoto K, Sen R, Ishihama A. Differential Regulation of rRNA and tRNA Transcription from the rRNA-tRNA Composite Operon in Escherichia coli. Plos One. 11: e0163057. PMID 28005933 DOI: 10.1371/Journal.Pone.0163057 |
0.509 |
|
| 2016 |
Urano H, Yoshida M, Ogawa A, Yamamoto K, Ishihama A, Ogasawara H. Cross-Regulation between Two Common Ancestral Response Regulators, HprR and CusR, in Escherichia coli. Microbiology (Reading, England). PMID 27983483 DOI: 10.1099/Mic.0.000410 |
0.377 |
|
| 2016 |
Shimada T, Tanaka K, Ishihama A. Transcription factor DecR (YbaO) controls detoxification of L-cysteine in Escherichia coli. Microbiology (Reading, England). PMID 27435271 DOI: 10.1099/Mic.0.000337 |
0.449 |
|
| 2016 |
Yoshida T, Sakamoto A, Terui Y, Takao K, Sugita Y, Yamamoto K, Ishihama A, Igarashi K, Kashiwagi K. Effect of Spermidine Analogues on Cell Growth of Escherichia coli Polyamine Requiring Mutant MA261. Plos One. 11: e0159494. PMID 27434546 DOI: 10.1371/Journal.Pone.0159494 |
0.338 |
|
| 2016 |
Yamanaka Y, Shimada T, Yamamoto K, Ishihama A. Transcription factor CecR (YbiH) regulates a set of genes affecting the sensitivity of Escherichia coli against cefoperazone and chloramphenicol. Microbiology (Reading, England). 162: 1253-64. PMID 27112147 DOI: 10.1099/Mic.0.000292 |
0.468 |
|
| 2016 |
Ishiguro A, Kimura N, Watanabe Y, Watanabe S, Ishihama A. TDP-43 binds and transports G-quadruplex-containing mRNAs into neurites for local translation. Genes to Cells : Devoted to Molecular & Cellular Mechanisms. PMID 26915990 DOI: 10.1111/Gtc.12352 |
0.39 |
|
| 2016 |
Ishihama A, Shimada T, Yamazaki Y. Transcription profile of Escherichia coli: genomic SELEX search for regulatory targets of transcription factors. Nucleic Acids Research. 44: 2058-74. PMID 26843427 DOI: 10.1093/Nar/Gkw051 |
0.462 |
|
| 2016 |
Yamamoto K, Nonaka G, Ozawa T, Takumi K, Ishihama A. Induction of the Escherichia coli yije gene expression by cystine Bioscience, Biotechnology and Biochemistry. 79: 218-222. PMID 25346166 DOI: 10.1080/09168451.2014.972328 |
0.34 |
|
| 2016 |
Yamanaka Y, Shimada T, Yamamoto K, Ishihama A. Transcription factor CecR (YbiH) regulates a set of genes affecting the sensitivity of Escherichia coli against cefoperazone and chloramphenicol Microbiology (United Kingdom). 162: 1253-1264. DOI: 10.1099/mic.0.000292 |
0.363 |
|
| 2015 |
Maeda M, Shimada T, Ishihama A. Strength and Regulation of Seven rRNA Promoters in Escherichia coli. Plos One. 10: e0144697. PMID 26717514 DOI: 10.1371/Journal.Pone.0144697 |
0.442 |
|
| 2015 |
Shimada T, Takada H, Yamamoto K, Ishihama A. Expanded roles of two-component response regulator OmpR in Escherichia coli: genomic SELEX search for novel regulation targets. Genes to Cells : Devoted to Molecular & Cellular Mechanisms. 20: 915-31. PMID 26332955 DOI: 10.1111/Gtc.12282 |
0.378 |
|
| 2015 |
Talukder A, Ishihama A. Growth phase dependent changes in the structure and protein composition of nucleoid in Escherichia coli. Science China. Life Sciences. 58: 902-11. PMID 26208826 DOI: 10.1007/S11427-015-4898-0 |
0.343 |
|
| 2015 |
Sakamoto A, Terui Y, Yoshida T, Yamamoto T, Suzuki H, Yamamoto K, Ishihama A, Igarashi K, Kashiwagi K. Three members of polyamine modulon under oxidative stress conditions: two transcription factors (SoxR and EmrR) and a glutathione synthetic enzyme (GshA). Plos One. 10: e0124883. PMID 25898225 DOI: 10.1371/Journal.Pone.0124883 |
0.357 |
|
| 2015 |
Ogasawara H, Ohe S, Ishihama A. Role of transcription factor NimR (YeaM) in sensitivity control of Escherichia coli to 2-nitroimidazole. Fems Microbiology Letters. 362: 1-8. PMID 25790494 DOI: 10.1093/Femsle/Fnu013 |
0.441 |
|
| 2015 |
Urano H, Umezawa Y, Yamamoto K, Ishihama A, Ogasawara H. Cooperative regulation of the common target genes between H₂O₂-sensing YedVW and Cu²⁺-sensing CusSR in Escherichia coli. Microbiology (Reading, England). 161: 729-38. PMID 25568260 DOI: 10.1099/Mic.0.000026 |
0.402 |
|
| 2015 |
Yamamoto K, Nakano M, Ishihama A. Regulatory role of transcription factor SutR (YdcN) in sulfur utilization in Escherichia coli. Microbiology (Reading, England). 161: 99-111. PMID 25406449 DOI: 10.1099/Mic.0.083550-0 |
0.389 |
|
| 2014 |
Yamanaka Y, Oshima T, Ishihama A, Yamamoto K. Characterization of the YdeO regulon in Escherichia coli. Plos One. 9: e111962. PMID 25375160 DOI: 10.1371/Journal.Pone.0111962 |
0.377 |
|
| 2014 |
Yamamoto K, Watanabe H, Ishihama A. Expression levels of transcription factors in Escherichia coli: growth phase- and growth condition-dependent variation of 90 regulators from six families. Microbiology (Reading, England). 160: 1903-13. PMID 25037164 DOI: 10.1099/Mic.0.079889-0 |
0.456 |
|
| 2014 |
Conway T, Creecy JP, Maddox SM, Grissom JE, Conkle TL, Shadid TM, Teramoto J, San Miguel P, Shimada T, Ishihama A, Mori H, Wanner BL. Unprecedented high-resolution view of bacterial operon architecture revealed by RNA sequencing. Mbio. 5: e01442-14. PMID 25006232 DOI: 10.1128/Mbio.01442-14 |
0.517 |
|
| 2014 |
Ishihama A, Kori A, Koshio E, Yamada K, Maeda H, Shimada T, Makinoshima H, Iwata A, Fujita N. Intracellular concentrations of 65 species of transcription factors with known regulatory functions in Escherichia coli. Journal of Bacteriology. 196: 2718-27. PMID 24837290 DOI: 10.1128/Jb.01579-14 |
0.516 |
|
| 2014 |
Nakano M, Ogasawara H, Shimada T, Yamamoto K, Ishihama A. Involvement of cAMP-CRP in transcription activation and repression of the pck gene encoding PEP carboxykinase, the key enzyme of gluconeogenesis. Fems Microbiology Letters. 355: 93-9. PMID 24814025 DOI: 10.1111/1574-6968.12466 |
0.431 |
|
| 2014 |
Shimada T, Shimada K, Matsui M, Kitai Y, Igarashi J, Suga H, Ishihama A. Roles of cell division control factor SdiA: recognition of quorum sensing signals and modulation of transcription regulation targets. Genes to Cells : Devoted to Molecular & Cellular Mechanisms. 19: 405-18. PMID 24645791 DOI: 10.1111/Gtc.12139 |
0.39 |
|
| 2014 |
Shimada T, Yamazaki Y, Tanaka K, Ishihama A. The whole set of constitutive promoters recognized by RNA polymerase RpoD holoenzyme of Escherichia coli. Plos One. 9: e90447. PMID 24603758 DOI: 10.1371/Journal.Pone.0090447 |
0.504 |
|
| 2014 |
Shiratsuchi A, Shimamoto N, Nitta M, Tuan TQ, Firdausi A, Gawasawa M, Yamamoto K, Ishihama A, Nakanishi Y. Role for σ38 in prolonged survival of escherichia coli in Drosophila melanogaster Journal of Immunology. 192: 666-675. PMID 24337747 DOI: 10.4049/Jimmunol.1300968 |
0.4 |
|
| 2014 |
Dudin O, Geiselmann J, Ogasawara H, Ishihama A, Lacour S. Repression of flagellar genes in exponential phase by CsgD and CpxR, two crucial modulators of Escherichia coli biofilm formation. Journal of Bacteriology. 196: 707-15. PMID 24272779 DOI: 10.1128/Jb.00938-13 |
0.407 |
|
| 2014 |
Talukder AA, Ishihama A. Dps Is a Stationary Phase-Specific Protein of Escherichia coli Nucleoid Ai Magazine. 4: 1095-1104. DOI: 10.4236/Aim.2014.415120 |
0.373 |
|
| 2013 |
Shimada K, Ogasawara H, Yamada K, Shimura M, Kori A, Shimada T, Yamanaka Y, Yamamoto K, Ishihama A. Screening of promoter-specific transcription factors: multiple regulators for the sdiA gene involved in cell division control and quorum sensing. Microbiology (Reading, England). 159: 2501-12. PMID 24025606 DOI: 10.1099/Mic.0.067538-0 |
0.458 |
|
| 2013 |
Sato YT, Watanabe S, Kenmotsu T, Ichikawa M, Yoshikawa Y, Teramoto J, Imanaka T, Ishihama A, Yoshikawa K. Structural change of DNA induced by nucleoid proteins: growth phase-specific Fis and stationary phase-specific Dps. Biophysical Journal. 105: 1037-44. PMID 23972855 DOI: 10.1016/J.Bpj.2013.07.025 |
0.307 |
|
| 2013 |
Kurata T, Katayama A, Hiramatsu M, Kiguchi Y, Takeuchi M, Watanabe T, Ogasawara H, Ishihama A, Yamamoto K. Identification of the set of genes, including nonannotated morA, under the direct control of ModE in Escherichia coli. Journal of Bacteriology. 195: 4496-505. PMID 23913318 DOI: 10.1128/Jb.00304-13 |
0.409 |
|
| 2013 |
Pukklay P, Nakanishi Y, Nitta M, Yamamoto K, Ishihama A, Shiratsuchi A. Involvement of EnvZ-OmpR two-component system in virulence control of Escherichia coli in Drosophila melanogaster. Biochemical and Biophysical Research Communications. 438: 306-11. PMID 23886953 DOI: 10.1016/J.Bbrc.2013.07.062 |
0.36 |
|
| 2013 |
Shimada T, Kori A, Ishihama A. Involvement of the ribose operon repressor RbsR in regulation of purine nucleotide synthesis in Escherichia coli. Fems Microbiology Letters. 344: 159-65. PMID 23651393 DOI: 10.1111/1574-6968.12172 |
0.378 |
|
| 2013 |
Shimada T, Yoshida H, Ishihama A. Involvement of cyclic AMP receptor protein in regulation of the rmf gene encoding the ribosome modulation factor in Escherichia coli. Journal of Bacteriology. 195: 2212-9. PMID 23475967 DOI: 10.1128/Jb.02279-12 |
0.465 |
|
| 2013 |
Shimada T, Yamazaki K, Ishihama A. Novel regulator PgrR for switch control of peptidoglycan recycling in Escherichia coli. Genes to Cells : Devoted to Molecular & Cellular Mechanisms. 18: 123-34. PMID 23301696 DOI: 10.1111/Gtc.12026 |
0.324 |
|
| 2012 |
Shimada T, Katayama Y, Kawakita S, Ogasawara H, Nakano M, Yamamoto K, Ishihama A. A novel regulator RcdA of the csgD gene encoding the master regulator of biofilm formation in Escherichia coli. Microbiologyopen. 1: 381-94. PMID 23233451 DOI: 10.1002/mbo3.42 |
0.328 |
|
| 2012 |
Ishihama A. Prokaryotic genome regulation: a revolutionary paradigm. Proceedings of the Japan Academy. Series B, Physical and Biological Sciences. 88: 485-508. PMID 23138451 DOI: DN/JST.JSTAGE/pjab/88.485 |
0.312 |
|
| 2012 |
Sakamoto A, Terui Y, Yamamoto T, Kasahara T, Nakamura M, Tomitori H, Yamamoto K, Ishihama A, Michael AJ, Igarashi K, Kashiwagi K. Enhanced biofilm formation and/or cell viability by polyamines through stimulation of response regulators UvrY and CpxR in the two-component signal transducing systems, and ribosome recycling factor. The International Journal of Biochemistry & Cell Biology. 44: 1877-86. PMID 22814172 DOI: 10.1016/J.Biocel.2012.07.010 |
0.353 |
|
| 2012 |
Yamanaka Y, Ishihama A, Yamamoto K. Induction of YdeO, a regulator for acid resistance genes, by ultraviolet irradiation in Escherichia coli. Bioscience, Biotechnology, and Biochemistry. 76: 1236-8. PMID 22790954 DOI: 10.1271/Bbb.120041 |
0.36 |
|
| 2012 |
Ogasawara H, Shinohara S, Yamamoto K, Ishihama A. Novel regulation targets of the metal-response BasS-BasR two-component system of Escherichia coli. Microbiology (Reading, England). 158: 1482-92. PMID 22442305 DOI: 10.1099/Mic.0.057745-0 |
0.41 |
|
| 2012 |
Terui Y, Akiyama M, Sakamoto A, Tomitori H, Yamamoto K, Ishihama A, Igarashi K, Kashiwagi K. Increase in cell viability by polyamines through stimulation of the synthesis of ppGpp regulatory protein and ω protein of RNA polymerase in Escherichia coli. The International Journal of Biochemistry & Cell Biology. 44: 412-22. PMID 22138225 DOI: 10.1016/J.Biocel.2011.11.017 |
0.399 |
|
| 2011 |
Yamamoto K, Oshima T, Nonaka G, Ito H, Ishihama A. Induction of the Escherichia coli cysK gene by genetic and environmental factors. Fems Microbiology Letters. 323: 88-95. PMID 22092684 DOI: 10.1111/J.1574-6968.2011.02364.X |
0.333 |
|
| 2011 |
Shimada T, Bridier A, Briandet R, Ishihama A. Novel roles of LeuO in transcription regulation of E. coli genome: antagonistic interplay with the universal silencer H-NS. Molecular Microbiology. 82: 378-97. PMID 21883529 DOI: 10.1111/J.1365-2958.2011.07818.X |
0.374 |
|
| 2011 |
Mitobe J, Yanagihara I, Ohnishi K, Yamamoto S, Ohnishi M, Ishihama A, Watanabe H. RodZ regulates the post-transcriptional processing of the Shigella sonnei type III secretion system. Embo Reports. 12: 911-6. PMID 21779005 DOI: 10.1038/Embor.2011.132 |
0.461 |
|
| 2011 |
Shimada T, Fujita N, Yamamoto K, Ishihama A. Novel roles of cAMP receptor protein (CRP) in regulation of transport and metabolism of carbon sources. Plos One. 6: e20081. PMID 21673794 DOI: 10.1371/Journal.Pone.0020081 |
0.374 |
|
| 2011 |
Ogasawara H, Yamamoto K, Ishihama A. Role of the biofilm master regulator CsgD in cross-regulation between biofilm formation and flagellar synthesis. Journal of Bacteriology. 193: 2587-97. PMID 21421764 DOI: 10.1128/Jb.01468-10 |
0.413 |
|
| 2011 |
Yamamoto K, Ishihama A, Busby SJ, Grainger DC. The Escherichia coli K-12 MntR miniregulon includes dps, which encodes the major stationary-phase DNA-binding protein. Journal of Bacteriology. 193: 1477-80. PMID 21239586 DOI: 10.1128/Jb.01230-10 |
0.417 |
|
| 2011 |
Shimada T, Yamamoto K, Ishihama A. Novel members of the Cra regulon involved in carbon metabolism in Escherichia coli. Journal of Bacteriology. 193: 649-59. PMID 21115656 DOI: 10.1128/Jb.01214-10 |
0.322 |
|
| 2010 |
Teramoto J, Yamanishi Y, Magdy el-SH, Hasegawa A, Kori A, Nakajima M, Arai F, Fukuda T, Ishihama A. Single live-bacterial cell assay of promoter activity and regulation. Genes to Cells : Devoted to Molecular & Cellular Mechanisms. 15: 1111-22. PMID 20964794 DOI: 10.1111/J.1365-2443.2010.01449.X |
0.334 |
|
| 2010 |
Ogasawara H, Yamamoto K, Ishihama A. Regulatory role of MlrA in transcription activation of csgD, the master regulator of biofilm formation in Escherichia coli. Fems Microbiology Letters. 312: 160-8. PMID 20874755 DOI: 10.1111/J.1574-6968.2010.02112.X |
0.4 |
|
| 2010 |
Terui Y, Tabei Y, Akiyama M, Higashi K, Tomitori H, Yamamoto K, Ishihama A, Igarashi K, Kashiwagi K. Ribosome modulation factor, an important protein for cell viability encoded by the polyamine modulon. The Journal of Biological Chemistry. 285: 28698-707. PMID 20628056 DOI: 10.1074/Jbc.M110.111195 |
0.393 |
|
| 2010 |
Ishihama A. Prokaryotic genome regulation: multifactor promoters, multitarget regulators and hierarchic networks. Fems Microbiology Reviews. 34: 628-45. PMID 20491932 DOI: 10.1111/J.1574-6976.2010.00227.X |
0.426 |
|
| 2010 |
Ogasawara H, Yamada K, Kori A, Yamamoto K, Ishihama A. Regulation of the Escherichia coli csgD promoter: interplay between five transcription factors. Microbiology (Reading, England). 156: 2470-83. PMID 20466769 DOI: 10.1099/Mic.0.039131-0 |
0.442 |
|
| 2010 |
Teramoto J, Yoshimura SH, Takeyasu K, Ishihama A. A novel nucleoid protein of Escherichia coli induced under anaerobiotic growth conditions. Nucleic Acids Research. 38: 3605-18. PMID 20156994 DOI: 10.1093/Nar/Gkq077 |
0.395 |
|
| 2010 |
Sato Y, Yoshikawa Y, Ichikawa M, Ishihama A, Yoshikawa K. 1P134 Difference in the action of Escherichia Coli nucleoid proteins, Fis and Dps, on DNA conformation(Nucleic acid:Interaction & Complex formation,The 48th Annual Meeting of the Biophysical Society of Japan) Seibutsu Butsuri. 50. DOI: 10.2142/Biophys.50.S43_1 |
0.324 |
|
| 2009 |
Ishii D, Ishihama A, Yamamoto K. Two modes of autoregulation of the murR repressor in Escherichia coli. Bioscience, Biotechnology, and Biochemistry. 73: 2528-30. PMID 19897902 DOI: 10.1271/Bbb.90421 |
0.356 |
|
| 2009 |
Ishida Y, Kori A, Ishihama A. Participation of regulator AscG of the beta-glucoside utilization operon in regulation of the propionate catabolism operon. Journal of Bacteriology. 191: 6136-44. PMID 19633077 DOI: 10.1128/Jb.00663-09 |
0.44 |
|
| 2009 |
Terui Y, Higashi K, Tabei Y, Tomitori H, Yamamoto K, Ishihama A, Igarashi K, Kashiwagi K. Enhancement of the synthesis of RpoE and StpA by polyamines at the level of translation in escherichia coli under heat shock conditions. Journal of Bacteriology. 191: 5348-57. PMID 19542278 DOI: 10.1128/Jb.00387-09 |
0.357 |
|
| 2009 |
Mitobe J, Morita-Ishihara T, Ishihama A, Watanabe H. Involvement of RNA-binding protein Hfq in the osmotic-response regulation of invE gene expression in Shigella sonnei. Bmc Microbiology. 9: 110. PMID 19476612 DOI: 10.1186/1471-2180-9-110 |
0.423 |
|
| 2009 |
Shimada T, Yamamoto K, Ishihama A. Involvement of the leucine response transcription factor LeuO in regulation of the genes for sulfa drug efflux. Journal of Bacteriology. 191: 4562-71. PMID 19429622 DOI: 10.1128/Jb.00108-09 |
0.362 |
|
| 2009 |
Yamamoto K, Matsumoto F, Minagawa S, Oshima T, Fujita N, Ogasawara N, Ishihama A. Characterization of CitA-CitB signal transduction activating genes involved in anaerobic citrate catabolism in Escherichia coli. Bioscience, Biotechnology, and Biochemistry. 73: 346-50. PMID 19202292 DOI: 10.1271/Bbb.80586 |
0.355 |
|
| 2008 |
Yamamoto K, Matsumoto F, Oshima T, Fujita N, Ogasawara N, Ishihama A. Anaerobic regulation of citrate fermentation by CitAB in Escherichia coli. Bioscience, Biotechnology, and Biochemistry. 72: 3011-4. PMID 18997424 DOI: 10.1271/Bbb.80301 |
0.424 |
|
| 2008 |
Hasegawa A, Ogasawara H, Kori A, Teramoto J, Ishihama A. The transcription regulator AllR senses both allantoin and glyoxylate and controls a set of genes for degradation and reutilization of purines. Microbiology (Reading, England). 154: 3366-78. PMID 18957590 DOI: 10.1099/Mic.0.2008/020016-0 |
0.335 |
|
| 2008 |
Umezawa Y, Shimada T, Kori A, Yamada K, Ishihama A. The uncharacterized transcription factor YdhM is the regulator of the nemA gene, encoding N-ethylmaleimide reductase. Journal of Bacteriology. 190: 5890-7. PMID 18567656 DOI: 10.1128/Jb.00459-08 |
0.443 |
|
| 2008 |
Shimada T, Ishihama A, Busby SJ, Grainger DC. The Escherichia coli RutR transcription factor binds at targets within genes as well as intergenic regions. Nucleic Acids Research. 36: 3950-5. PMID 18515344 DOI: 10.1093/Nar/Gkn339 |
0.406 |
|
| 2008 |
Mitobe J, Morita-Ishihara T, Ishihama A, Watanabe H. Involvement of RNA-binding protein Hfq in the post-transcriptional regulation of invE gene expression in Shigella sonnei. The Journal of Biological Chemistry. 283: 5738-47. PMID 18156173 DOI: 10.1074/Jbc.M710108200 |
0.464 |
|
| 2008 |
Yamamoto K, Ogasawara H, Ishihama A. Involvement of multiple transcription factors for metal-induced spy gene expression in Escherichia coli. Journal of Biotechnology. 133: 196-200. PMID 17884222 DOI: 10.1016/J.Jbiotec.2007.08.002 |
0.375 |
|
| 2008 |
Yamamoto K, Yata K, Fujita N, Ishihama A. Novel mode of transcription regulation by SdiA, an Escherichia coli homologue of the quorum-sensing regulator. Molecular Microbiology. 41: 1187-1198. PMID 11555297 DOI: 10.1046/J.1365-2958.2001.02585.X |
0.555 |
|
| 2008 |
Talukder AA, Hossain MA, Yamada M, Ishihama A. Nucleoids Dynamic in Escherichia coli: A Growth Phase Dependent Process Bangladesh Journal of Microbiology. 23: 81-88. DOI: 10.3329/Bjm.V23I2.867 |
0.35 |
|
| 2007 |
Shimada T, Hirao K, Kori A, Yamamoto K, Ishihama A. RutR is the uracil/thymine-sensing master regulator of a set of genes for synthesis and degradation of pyrimidines. Molecular Microbiology. 66: 744-57. PMID 17919280 DOI: 10.1111/J.1365-2958.2007.05954.X |
0.449 |
|
| 2007 |
Yang J, Ogawa Y, Camakaris H, Shimada T, Ishihama A, Pittard AJ. folA, a new member of the TyrR regulon in Escherichia coli K-12. Journal of Bacteriology. 189: 6080-4. PMID 17557822 DOI: 10.1128/Jb.00482-07 |
0.486 |
|
| 2007 |
Ogasawara H, Ishida Y, Yamada K, Yamamoto K, Ishihama A. PdhR (pyruvate dehydrogenase complex regulator) controls the respiratory electron transport system in Escherichia coli. Journal of Bacteriology. 189: 5534-41. PMID 17513468 DOI: 10.1128/Jb.00229-07 |
0.385 |
|
| 2007 |
Ogasawara H, Hasegawa A, Kanda E, Miki T, Yamamoto K, Ishihama A. Genomic SELEX search for target promoters under the control of the PhoQP-RstBA signal relay cascade. Journal of Bacteriology. 189: 4791-9. PMID 17468243 DOI: 10.1128/Jb.00319-07 |
0.405 |
|
| 2007 |
Okada K, Ichihara H, Takahashi H, Fujita N, Ishihama A, Hakoshima T. Preparation and preliminary X-ray diffraction analysis of crystals of bacterial flagellar sigma factor sigma 28 in complex with the sigma 28-binding region of its antisigma factor, FlgM. Acta Crystallographica. Section F, Structural Biology and Crystallization Communications. 63: 196-9. PMID 17329813 DOI: 10.1107/S174430910700509X |
0.357 |
|
| 2007 |
Honda A, Okamoto T, Ishihama A. Host factor Ebp1: selective inhibitor of influenza virus transcriptase. Genes to Cells : Devoted to Molecular & Cellular Mechanisms. 12: 133-42. PMID 17295834 DOI: 10.1111/J.1365-2443.2007.01047.X |
0.499 |
|
| 2007 |
Chatterji D, Ogawa Y, Shimada T, Ishihama A. The role of the omega subunit of RNA polymerase in expression of the relA gene in Escherichia coli. Fems Microbiology Letters. 267: 51-5. PMID 17233676 DOI: 10.1111/J.1574-6968.2006.00532.X |
0.468 |
|
| 2007 |
Terui Y, Higashi K, Taniguchi S, Shigemasa A, Nishimura K, Yamamoto K, Kashiwagi K, Ishihama A, Igarashi K. Enhancement of the synthesis of RpoN, Cra, and H-NS by polyamines at the level of translation in Escherichia coli cultured with glucose and glutamate. Journal of Bacteriology. 189: 2359-68. PMID 17220219 DOI: 10.1128/Jb.01562-06 |
0.354 |
|
| 2006 |
Ohniwa RL, Morikawa K, Kim J, Ohta T, Ishihama A, Wada C, Takeyasu K. Dynamic state of DNA topology is essential for genome condensation in bacteria. The Embo Journal. 25: 5591-602. PMID 17093499 DOI: 10.1038/Sj.Emboj.7601414 |
0.337 |
|
| 2006 |
Yamamoto K, Ishihama A. Characterization of copper-inducible promoters regulated by CpxA/CpxR in Escherichia coli. Bioscience, Biotechnology, and Biochemistry. 70: 1688-95. PMID 16861804 DOI: 10.1271/Bbb.60024 |
0.386 |
|
| 2006 |
Higashi K, Kashiwagi K, Taniguchi S, Terui Y, Yamamoto K, Ishihama A, Igarashi K. Enhancement of +1 frameshift by polyamines during translation of polypeptide release factor 2 in Escherichia coli. The Journal of Biological Chemistry. 281: 9527-37. PMID 16476727 DOI: 10.1074/Jbc.M513752200 |
0.369 |
|
| 2005 |
Yamamoto K, Ishihama A. Transcriptional response of Escherichia coli to external zinc. Journal of Bacteriology. 187: 6333-40. PMID 16159766 DOI: 10.1128/Jb.187.18.6333-6340.2005 |
0.373 |
|
| 2005 |
Ogasawara H, Teramoto J, Yamamoto S, Hirao K, Yamamoto K, Ishihama A, Utsumi R. Negative regulation of DNA repair gene (uvrA) expression by ArcA/ArcB two-component system in Escherichia coli. Fems Microbiology Letters. 251: 243-9. PMID 16140472 DOI: 10.1016/J.Femsle.2005.08.006 |
0.396 |
|
| 2005 |
Shimada T, Fujita N, Maeda M, Ishihama A. Systematic search for the Cra-binding promoters using genomic SELEX system. Genes to Cells : Devoted to Molecular & Cellular Mechanisms. 10: 907-18. PMID 16115199 DOI: 10.1111/J.1365-2443.2005.00888.X |
0.451 |
|
| 2005 |
Yamamoto K, Ishihama A. Transcriptional response of Escherichia coli to external copper. Molecular Microbiology. 56: 215-27. PMID 15773991 DOI: 10.1111/J.1365-2958.2005.04532.X |
0.383 |
|
| 2005 |
Hayashi K, Watanabe T, Tanaka A, Furumoto T, Sato-Tsuchiya C, Kimura M, Yokoi M, Ishihama A, Hanaoka F, Ohkuma Y. Studies of Schizosaccharomyces pombe TFIIE indicate conformational and functional changes in RNA polymerase II at transcription initiation. Genes to Cells : Devoted to Molecular & Cellular Mechanisms. 10: 207-24. PMID 15743411 DOI: 10.1111/J.1365-2443.2005.00833.X |
0.52 |
|
| 2005 |
Imazawa Y, Hisatake K, Mitsuzawa H, Matsumoto M, Tsukui T, Nakagawa K, Nakadai T, Shimada M, Ishihama A, Nogi Y. The fission yeast protein Ker1p is an ortholog of RNA polymerase I subunit A14 in Saccharomyces cerevisiae and is required for stable association of Rrn3p and RPA21 in RNA polymerase I. The Journal of Biological Chemistry. 280: 11467-74. PMID 15647272 DOI: 10.1074/Jbc.M411150200 |
0.384 |
|
| 2005 |
Mitsuzawa H, Kimura M, Kanda E, Ishihama A. Glyceraldehyde-3-phosphate dehydrogenase and actin associate with RNA polymerase II and interact with its Rpb7 subunit. Febs Letters. 579: 48-52. PMID 15620689 DOI: 10.1016/J.Febslet.2004.11.045 |
0.451 |
|
| 2004 |
Kimura M, Ishihama A. Tfg3, a subunit of the general transcription factor TFIIF in Schizosaccharomyces pombe, functions under stress conditions. Nucleic Acids Research. 32: 6706-15. PMID 15616156 DOI: 10.1093/Nar/Gkh1000 |
0.451 |
|
| 2004 |
Ogasawara H, Teramoto J, Hirao K, Yamamoto K, Ishihama A, Utsumi R. Negative regulation of DNA repair gene (ung) expression by the CpxR/CpxA two-component system in Escherichia coli K-12 and induction of mutations by increased expression of CpxR. Journal of Bacteriology. 186: 8317-25. PMID 15576781 DOI: 10.1128/Jb.186.24.8317-8325.2004 |
0.404 |
|
| 2004 |
Shimada T, Makinoshima H, Ogawa Y, Miki T, Maeda M, Ishihama A. Classification and strength measurement of stationary-phase promoters by use of a newly developed promoter cloning vector. Journal of Bacteriology. 186: 7112-22. PMID 15489422 DOI: 10.1128/Jb.186.21.7112-7122.2004 |
0.403 |
|
| 2004 |
Yoshida M, Kashiwagi K, Shigemasa A, Taniguchi S, Yamamoto K, Makinoshima H, Ishihama A, Igarashi K. A unifying model for the role of polyamines in bacterial cell growth, the polyamine modulon. The Journal of Biological Chemistry. 279: 46008-13. PMID 15326188 DOI: 10.1074/Jbc.M404393200 |
0.397 |
|
| 2004 |
King T, Ishihama A, Kori A, Ferenci T. A regulatory trade-off as a source of strain variation in the species Escherichia coli. Journal of Bacteriology. 186: 5614-20. PMID 15317765 DOI: 10.1128/Jb.186.17.5614-5620.2004 |
0.344 |
|
| 2004 |
Kolpashchikov DM, Honda A, Ishihama A. Structure-function relationship of the influenza virus RNA polymerase: primer-binding site on the PB1 subunit. Biochemistry. 43: 5882-5887. PMID 15134462 DOI: 10.1021/Bi036139E |
0.465 |
|
| 2004 |
Eguchi Y, Okada T, Minagawa S, Oshima T, Mori H, Yamamoto K, Ishihama A, Utsumi R. Signal Transduction Cascade between EvgA/EvgS and PhoP/PhoQ Two-Component Systems of Escherichia coli Journal of Bacteriology. 186: 3006-3014. PMID 15126461 DOI: 10.1128/Jb.186.10.3006-3014.2004 |
0.37 |
|
| 2004 |
Kim J, Yoshimura SH, Hizume K, Ohniwa RL, Ishihama A, Takeyasu K. Fundamental structural units of the Escherichia coli nucleoid revealed by atomic force microscopy Nucleic Acids Research. 32: 1982-1992. PMID 15060178 DOI: 10.1093/Nar/Gkh512 |
0.302 |
|
| 2004 |
Yang JI, Hwang JS, Camakaris H, Irawaty W, Ishihama A, Pittard J. Mode of action of the TyrR protein: Repression and activation of the tyrP promoter of Eschenchia coli Molecular Microbiology. 52: 243-256. PMID 15049824 DOI: 10.1111/J.1365-2958.2003.03965.X |
0.479 |
|
| 2004 |
Mitsuzawa H, Ishihama A. RNA polymerase II transcription apparatus in Schizosaccharomyces pombe. Current Genetics. 44: 287-294. PMID 14574615 DOI: 10.1007/S00294-003-0446-8 |
0.483 |
|
| 2003 |
Meares CF, Datwyler SA, Schmidt BD, Owens J, Ishihama A. Principles and methods of affinity cleavage in studying transcription. Methods in Enzymology. 371: 82-106. PMID 14712693 DOI: 10.1016/S0076-6879(03)71006-4 |
0.384 |
|
| 2003 |
Johnson DC, Ishihama A, Stevens AM. Involvement of region 4 of the sigma70 subunit of RNA polymerase in transcriptional activation of the lux operon during quorum sensing. Fems Microbiology Letters. 228: 193-201. PMID 14638424 DOI: 10.1016/S0378-1097(03)00750-X |
0.524 |
|
| 2003 |
Eguchi Y, Oshima T, Mori H, Aono R, Yamamoto K, Ishihama A, Utsumi R. Transcriptional regulation of drug efflux genes by EvgAS, a two-component system in Escherichia coli. Microbiology. 149: 2819-2828. PMID 14523115 DOI: 10.1099/Mic.0.26460-0 |
0.426 |
|
| 2003 |
Aketani S, Tanaka K, Yamamoto K, Ishihama A, Cao H, Tengeiji A, Shionoya M. Role of a non-natural beta-C-nucleotide unit in DNA as a template for DNA and RNA syntheses and as a substrate for nucleolytic digestion. European Journal of Pharmaceutical Sciences : Official Journal of the European Federation For Pharmaceutical Sciences. 20: 43-51. PMID 13678792 DOI: 10.1016/S0928-0987(03)00166-0 |
0.436 |
|
| 2003 |
Mitsuzawa H, Kanda E, Ishihama A. Rpb7 subunit of RNA polymerase II interacts with an RNA-binding protein involved in processing of transcripts Nucleic Acids Research. 31: 4696-4701. PMID 12907709 DOI: 10.1093/Nar/Gkg688 |
0.501 |
|
| 2003 |
Nakagawa K, Hisatake K, Imazawa Y, Ishiguro A, Matsumoto M, Pape L, Ishihama A, Nogi Y. The fission yeast RPA51 is a functional homolog of the budding yeast A49 subunit of RNA polymerase I and required for maximizing transcription of ribosomal DNA Genes & Genetic Systems. 78: 199-209. PMID 12893961 DOI: 10.1266/Ggs.78.199 |
0.489 |
|
| 2003 |
Minagawa S, Ogasawara H, Kato A, Yamamoto K, Eguchi Y, Oshima T, Mori H, Ishihama A, Utsumi R. Identification and Molecular Characterization of the Mg2+ Stimulon of Escherichia coli Journal of Bacteriology. 185: 3696-3702. PMID 12813061 DOI: 10.1128/Jb.185.13.3696-3702.2003 |
0.394 |
|
| 2003 |
Macchi R, Montesissa L, Murakami K, Ishihama A, De Lorenzo V, Bertoni G. Recruitment of sigma54-RNA polymerase to the Pu promoter of Pseudomonas putida through integration host factor-mediated positioning switch of alpha subunit carboxyl-terminal domain on an UP-like element. The Journal of Biological Chemistry. 278: 27695-702. PMID 12754257 DOI: 10.1074/Jbc.M303031200 |
0.657 |
|
| 2003 |
Burrows PC, Severinov K, Ishihama A, Buck M, Wigneshweraraj SR. Mapping σ54-RNA polymerase interactions at the -24 consensus promoter element Journal of Biological Chemistry. 278: 29728-29743. PMID 12750380 DOI: 10.1074/Jbc.M303596200 |
0.507 |
|
| 2003 |
Gowrishankar J, Yamamoto K, Subbarayan PR, Ishihama A. In Vitro Properties of RpoS (σS) Mutants of Escherichia coli with Postulated N-Terminal Subregion 1.1 or C-Terminal Region 4 Deleted Journal of Bacteriology. 185: 2673-2679. PMID 12670993 DOI: 10.1128/Jb.185.8.2673-2679.2003 |
0.396 |
|
| 2003 |
Makinoshima H, Aizawa S, Hayashi H, Miki T, Nishimura A, Ishihama A. Growth phase-coupled alterations in cell structure and function of Escherichia coli. Journal of Bacteriology. 185: 1338-45. PMID 12562804 DOI: 10.1128/Jb.185.4.1338-1345.2003 |
0.357 |
|
| 2002 |
Yamamoto K, Ishihama A. Two different modes of transcription repression of the Escherichia coli acetate operon by IclR. Molecular Microbiology. 47: 183-194. PMID 12492863 DOI: 10.1046/J.1365-2958.2003.03287.X |
0.535 |
|
| 2002 |
Aketani S, Tanaka K, Yamamoto K, Ishihama A, Cao H, Tengeiji A, Hiraoka S, Shiro M, Shionoya M. Syntheses and structure-activity relationships of nonnatural beta-C-nucleoside 5'-triphosphates bearing an aromatic nucleobase with phenolic hydroxy groups: inhibitory activities against DNA polymerases. Journal of Medicinal Chemistry. 45: 5594-603. PMID 12459026 DOI: 10.1021/Jm020193W |
0.311 |
|
| 2002 |
Samuel Raj V, Füll C, Yoshida M, Sakata K, Kashiwagi K, Ishihama A, Igarashi K. Decrease in cell viability in an RMF, sigma(38), and OmpC triple mutant of Escherichia coli. Biochemical and Biophysical Research Communications. 299: 252-7. PMID 12437978 DOI: 10.1016/S0006-291X(02)02627-X |
0.384 |
|
| 2002 |
Honda A, Mizumoto K, Ishihama A. Minimum molecular architectures for transcription and replication of the influenza virus Proceedings of the National Academy of Sciences of the United States of America. 99: 13166-13171. PMID 12271117 DOI: 10.1073/Pnas.152456799 |
0.477 |
|
| 2002 |
Yoshida M, Kashiwagi K, Kawai G, Ishihama A, Igarashi K. Polyamines Enhance Synthesis of the RNA Polymerase ς38Subunit by Suppression of an Amber Termination Codon in the Open Reading Frame Journal of Biological Chemistry. 277: 37139-37146. PMID 12147703 DOI: 10.1074/Jbc.M206668200 |
0.396 |
|
| 2002 |
Finney AH, Blick RJ, Murakami K, Ishihama A, Stevens AM. Role of the C-terminal domain of the alpha subunit of RNA polymerase in LuxR-dependent transcriptional activation of the lux operon during quorum sensing. Journal of Bacteriology. 184: 4520-8. PMID 12142422 DOI: 10.1128/Jb.184.16.4520-4528.2002 |
0.656 |
|
| 2002 |
Yamamoto K, Ogasawara H, Fujita N, Utsumi R, Ishihama A. Novel mode of transcription regulation of divergently overlapping promoters by PhoP, the regulator of two-component system sensing external magnesium availability. Molecular Microbiology. 45: 423-438. PMID 12123454 DOI: 10.1046/J.1365-2958.2002.03017.X |
0.515 |
|
| 2002 |
Katayama A, Tsujii A, Wada A, Nishino T, Ishihama A. Systematic search for zinc-binding proteins in Escherichia coli. European Journal of Biochemistry. 269: 2403-13. PMID 11985624 DOI: 10.1046/J.1432-1033.2002.02900.X |
0.36 |
|
| 2002 |
Mitsuzawa H, Ishihama A. Identification of histone H4-like TAF in Schizosaccharomyces pombe as a protein that interacts with WD repeat-containing TAF Nucleic Acids Research. 30: 1952-1958. PMID 11972332 DOI: 10.1093/Nar/30.9.1952 |
0.39 |
|
| 2002 |
Sakurai H, Ishihama A. Level of the RNA polymerase II in the fission yeast stays constant but phosphorylation of its carboxyl terminal domain varies depending on the phase and rate of cell growth. Genes to Cells. 7: 273-284. PMID 11918671 DOI: 10.1046/J.1365-2443.2002.00522.X |
0.465 |
|
| 2002 |
Colland F, Fujita N, Ishihama A, Kolb A. The interaction between sigmaS, the stationary phase sigma factor, and the core enzyme of Escherichia coli RNA polymerase. Genes to Cells. 7: 233-247. PMID 11918668 DOI: 10.1046/J.1365-2443.2002.00517.X |
0.481 |
|
| 2002 |
Kimura M, Suzuki H, Ishihama A. Formation of a carboxy-terminal domain phosphatase (Fcp1)/TFIIF/RNA polymerase II (pol II) complex in Schizosaccharomyces pombe involves direct interaction between Fcp1 and the Rpb4 subunit of pol II. Molecular and Cellular Biology. 22: 1577-1588. PMID 11839823 DOI: 10.1128/Mcb.22.5.1577-1588.2002 |
0.412 |
|
| 2001 |
Ozoline ON, Fujita N, Ishihama A. Mode of DNA–protein interaction between the C-terminal domain of Escherichia coli RNA polymerase α subunit and T7D promoter UP element Nucleic Acids Research. 29: 4909-4919. PMID 11812819 DOI: 10.1093/Nar/29.24.4909 |
0.442 |
|
| 2001 |
Shin M, Kang S, Hyun S, Fujita N, Ishihama A, Valentin‐Hansen P, Choy HE. Repression of deoP2 in Escherichia coli by CytR: conversion of a transcription activator into a repressor The Embo Journal. 20: 5392-5399. PMID 11574471 DOI: 10.1093/Emboj/20.19.5392 |
0.521 |
|
| 2001 |
Ghosh P, Ishihama A, Chatterji D. Escherichia coli RNA polymerase subunit ω and its N‐terminal domain bind full‐length β′ to facilitate incorporation into the α2β subassembly Febs Journal. 268: 4621-4627. PMID 11531998 DOI: 10.1046/J.1432-1327.2001.02381.X |
0.449 |
|
| 2001 |
Mitobe J, Mitsuzawa H, Ishihama A. Functional analysis of RNA polymerase II Rpb3 mutants of the fission yeast Schizosaccharomyces pombe. Current Genetics. 39: 210-221. PMID 11453250 DOI: 10.1007/S002940100203 |
0.5 |
|
| 2001 |
Raj VS, Tomitori H, Yoshida M, Apirakaramwong A, Kashiwagi K, Takio K, Ishihama A, Igarashi K. Properties of a revertant of Escherichia coli viable in the presence of spermidine accumulation: increase in L-glycerol 3-phosphate. Journal of Bacteriology. 183: 4493-8. PMID 11443083 DOI: 10.1128/Jb.183.15.4493-4498.2001 |
0.396 |
|
| 2001 |
Culham DE, Lu A, Jishage M, Krogfelt KA, Ishihama A, Wood JM. The osmotic stress response and virulence in pyelonephritis isolates of Escherichia coli: contributions of RpoS, ProP, ProU and other systems. Microbiology (Reading, England). 147: 1657-1670. PMID 11390697 DOI: 10.1099/00221287-147-6-1657 |
0.317 |
|
| 2001 |
Honda A, Endo A, Mizumoto K, Ishihama A. Differential roles of viral RNA and cRNA in functional modulation of the influenza virus RNA polymerase. Journal of Biological Chemistry. 276: 31179-31185. PMID 11373286 DOI: 10.1074/Jbc.M102856200 |
0.484 |
|
| 2001 |
Jishage M, Dasgupta D, Ishihama A. Mapping of the Rsd contact site on the sigma 70 subunit of Escherichia coli RNA polymerase Journal of Bacteriology. 183: 2952-2956. PMID 11292818 DOI: 10.1128/Jb.183.9.2952-2956.2001 |
0.467 |
|
| 2001 |
Mitsuzawa H, Seino H, Yamao F, Ishihama A. Two WD Repeat-containing TATA-binding Protein-associated Factors in Fission Yeast That Suppress Defects in the Anaphase-promoting Complex Journal of Biological Chemistry. 276: 17117-17124. PMID 11279037 DOI: 10.1074/Jbc.M100248200 |
0.411 |
|
| 2001 |
Yoshida M, Kashiwagi K, Kawai G, Ishihama A, Igarashi K. Polyamine Enhancement of the Synthesis of Adenylate Cyclase at the Translational Level and the Consequential Stimulation of the Synthesis of the RNA Polymerase ς28Subunit Journal of Biological Chemistry. 276: 16289-16295. PMID 11278825 DOI: 10.1074/Jbc.M011059200 |
0.392 |
|
| 2001 |
Wigneshweraraj SR, Chaney MK, Ishihama A, Buck M. Regulatory sequences in sigma 54 localise near the start of DNA melting. Journal of Molecular Biology. 306: 681-701. PMID 11243780 DOI: 10.1006/Jmbi.2000.4393 |
0.461 |
|
| 2001 |
Yasuno K, Yamazaki T, Tanaka Y, Kodama TS, Matsugami A, Katahira M, Ishihama A, Kyogoku Y. Interaction of the C-terminal domain of the E. coli RNA polymerase α subunit with the UP element: recognizing the backbone structure in the minor groove surface Journal of Molecular Biology. 306: 213-225. PMID 11237595 DOI: 10.1006/Jmbi.2000.4369 |
0.437 |
|
| 2001 |
Wigneshweraraj SR, Ishihama A, Buck M. In vitro roles of invariant helix–turn–helix motif residue R383 in σ54 (σN) Nucleic Acids Research. 29: 1163-1174. PMID 11222766 DOI: 10.1093/Nar/29.5.1163 |
0.386 |
|
| 2001 |
Sujatha S, Ishihama A, Chatterji D. Functional complementation between mutations at two distant positions in Escherichia coli RNA polymerase as revealed by second-site suppression Molecular Genetics and Genomics. 264: 531-538. PMID 11212907 DOI: 10.1007/S004380000353 |
0.44 |
|
| 2001 |
Sakurai H, Ishihama A. Transcription organization and mRNA levels of the genes for all 12 subunits of the fission yeast RNA polymerase II. Genes to Cells. 6: 25-36. PMID 11168594 DOI: 10.1046/J.1365-2443.2001.00394.X |
0.472 |
|
| 2001 |
Kimura M, Sakurai H, Ishihama A. Intracellular contents and assembly states of all 12 subunits of the RNA polymerase II in the fission yeast Schizosaccharomyces pombe. European Journal of Biochemistry. 268: 612-9. PMID 11168400 DOI: 10.1046/J.1432-1327.2001.01911.X |
0.447 |
|
| 2000 |
Hatta M, Asano Y, Masunaga K, Ito T, Okazaki K, Toyoda T, Kawaoka Y, Ishihama A, Kida H. Mapping of functional domains on the influenza A virus RNA polymerase PB2 molecule using monoclonal antibodies. Archives of Virology. 145: 1947-1961. PMID 11043953 DOI: 10.1007/S007050070068 |
0.377 |
|
| 2000 |
Ishihama A. Functional modulation of Escherichia coli RNA polymerase Annual Review of Microbiology. 54: 499-518. PMID 11018136 DOI: 10.1146/Annurev.Micro.54.1.499 |
0.528 |
|
| 2000 |
Maeda H, Fujita N, Ishihama A. Competition among seven Escherichia coli sigma subunits: relative binding affinities to the core RNA polymerase. Nucleic Acids Research. 28: 3497-503. PMID 10982868 DOI: 10.1093/Nar/28.18.3497 |
0.474 |
|
| 2000 |
Azam TA, Hiraga S, Ishihama A. Two types of localization of the DNA-binding proteins within the Escherichia coli nucleoid. Genes to Cells. 5: 613-626. PMID 10947847 DOI: 10.1046/J.1365-2443.2000.00350.X |
0.387 |
|
| 2000 |
Otomo T, Yamazaki T, Murakami K, Ishihama A, Kyogoku Y. Structural study of the N-terminal domain of the alpha subunit of Escherichia coli RNA polymerase solubilized with non-denaturing detergents. Journal of Biochemistry. 128: 337-344. PMID 10920271 DOI: 10.1093/Oxfordjournals.Jbchem.A022758 |
0.562 |
|
| 2000 |
Ohnuma M, Fujita N, Ishihama A, Tanaka K, Takahashi H. A Carboxy-Terminal 16-Amino-Acid Region of ς38 ofEscherichia coli Is Important for Transcription under High-Salt Conditions and Sigma Activities In Vivo Journal of Bacteriology. 182: 4628-4631. PMID 10913098 DOI: 10.1128/Jb.182.16.4628-4631.2000 |
0.506 |
|
| 2000 |
Wigneshweraraj SR, Fujita N, Ishihama A, Buck M. Conservation of sigma-core RNA polymerase proximity relationships between the enhancer-independent and enhancer-dependent sigma classes. The Embo Journal. 19: 3038-3048. PMID 10856247 DOI: 10.1093/Emboj/19.12.3038 |
0.467 |
|
| 2000 |
Fujita N, Endo S, Ishihama A. Structural requirements for the interdomain linker of alpha subunit of Escherichia coli RNA polymerase. Biochemistry. 39: 6243-6249. PMID 10821700 DOI: 10.1021/Bi000020D |
0.508 |
|
| 2000 |
Yamamoto K, Nagura R, Tanabe H, Fujita N, Ishihama A, Utsumi R. Negative regulation of the bolA1p of Escherichia coli K‐12 by the transcription factor OmpR for osmolarity response genes Fems Microbiology Letters. 186: 257-262. PMID 10802181 DOI: 10.1111/J.1574-6968.2000.Tb09114.X |
0.445 |
|
| 2000 |
Bown JA, Kolb A, Meares CF, Ishihama A, Minchin SD, Busby SJ. Positioning of region 4 of the Escherichia coli RNA polymerase sigma(70) subunit by a transcription activator. Journal of Bacteriology. 182: 2982-4. PMID 10781573 DOI: 10.1128/Jb.182.10.2982-2984.2000 |
0.508 |
|
| 2000 |
Wada A, Mikkola R, Kurland CG, Ishihama A. Growth phase-coupled changes of the ribosome profile in natural isolates and laboratory strains of Escherichia coli. Journal of Bacteriology. 182: 2893-9. PMID 10781560 DOI: 10.1128/Jb.182.10.2893-2899.2000 |
0.326 |
|
| 2000 |
Hwang J, Yamada K, Honda A, Nakade K, Ishihama A. Expression of Functional Influenza Virus RNA Polymerase in the Methylotrophic Yeast Pichia pastoris Journal of Virology. 74: 4074-4084. PMID 10756019 DOI: 10.1128/Jvi.74.9.4074-4084.2000 |
0.472 |
|
| 2000 |
Shpakovski GV, Gadal O, Labarre-Mariotte S, Lebedenko EN, Miklos I, Sakurai H, Proshkin SA, Van Mullem V, Ishihama A, Thuriaux P. Functional conservation of RNA polymerase II in fission and budding yeasts. Journal of Molecular Biology. 295: 1119-27. PMID 10653691 DOI: 10.1006/Jmbi.1999.3399 |
0.461 |
|
| 2000 |
Katayama A, Fujita N, Ishihama A. Mapping of Subunit-Subunit Contact Surfaces on the β′ Subunit of Escherichia coli RNA Polymerase Journal of Biological Chemistry. 275: 3583-3592. PMID 10652354 DOI: 10.1074/Jbc.275.5.3583 |
0.484 |
|
| 2000 |
Kimura M, Ishihama A. Involvement of multiple subunit–subunit contacts in the assembly of RNA polymerase II Nucleic Acids Research. 28: 952-959. PMID 10648788 DOI: 10.1093/Nar/28.4.952 |
0.463 |
|
| 2000 |
Ishiguro A, Nogi Y, Hisatake K, Muramatsu M, Ishihama A. The Rpb6 Subunit of Fission Yeast RNA Polymerase II Is a Contact Target of the Transcription Elongation Factor TFIIS Molecular and Cellular Biology. 20: 1263-1270. PMID 10648612 DOI: 10.1128/Mcb.20.4.1263-1270.2000 |
0.525 |
|
| 2000 |
Maeda H, Jishage M, Nomura T, Fujita N, Ishihama A. Two Extracytoplasmic Function Sigma Subunits, ςE and ςFecI, of Escherichia coli: Promoter Selectivity and Intracellular Levels Journal of Bacteriology. 182: 1181-1184. PMID 10648550 DOI: 10.1128/Jb.182.4.1181-1184.2000 |
0.447 |
|
| 2000 |
Ozoline ON, Fujita N, Ishihama A. Transcription activation mediated by the carboxyl-terminal domain of the RNA polymerase alpha-subunit. Multipoint monitoring using a fluorescent probe. Journal of Biological Chemistry. 275: 1119-1127. PMID 10625654 DOI: 10.1074/Jbc.275.2.1119 |
0.448 |
|
| 2000 |
Ishihama A. Molecular anatomy of RNA polymerase using protein-conjugated metal probes with nuclease and protease activities Chemical Communications. 1091-1094. DOI: 10.1039/A908392H |
0.508 |
|
| 1999 |
Azam TA, Ishihama A. Twelve Species of the Nucleoid-associated Protein from Escherichia coli SEQUENCE RECOGNITION SPECIFICITY AND DNA BINDING AFFINITY Journal of Biological Chemistry. 274: 33105-33113. PMID 10551881 DOI: 10.1074/Jbc.274.46.33105 |
0.356 |
|
| 1999 |
Apirakaramwong A, Kashiwagi K, Raj VS, Sakata K, Kakinuma Y, Ishihama A, Igarashi K. Involvement of ppGpp, ribosome modulation factor, and stationary phase-specific sigma factor sigma(S) in the decrease in cell viability caused by spermidine. Biochemical and Biophysical Research Communications. 264: 643-7. PMID 10543985 DOI: 10.1006/Bbrc.1999.1556 |
0.322 |
|
| 1999 |
Honda A, Mizumoto K, Ishihama A. Two separate sequences of PB2 subunit constitute the RNA cap-binding site of influenza virus RNA polymerase. Genes to Cells. 4: 475-485. PMID 10526235 DOI: 10.1046/J.1365-2443.1999.00275.X |
0.503 |
|
| 1999 |
Sakurai H, Mitsuzawa H, Kimura M, Ishihama A. The Rpb4 Subunit of Fission Yeast Schizosaccharomyces pombe RNA Polymerase II Is Essential for Cell Viability and Similar in Structure to the Corresponding Subunits of Higher Eukaryotes Molecular and Cellular Biology. 19: 7511-7518. PMID 10523639 DOI: 10.1128/Mcb.19.11.7511 |
0.448 |
|
| 1999 |
Azam TA, Iwata A, Nishimura A, Ueda S, Ishihama A. Growth Phase-Dependent Variation in Protein Composition of the Escherichia coli Nucleoid Journal of Bacteriology. 181: 6361-6370. PMID 10515926 DOI: 10.1128/Jb.181.20.6361-6370.1999 |
0.38 |
|
| 1999 |
Mitobe J, Mitsuzawa H, Yasui K, Ishihama A. Isolation and characterization of temperature-sensitive mutations in the gene (rpb3) for subunit 3 of RNA polymerase II in the fission yeast Schizosaccharomyces pombe. Molecular Genetics and Genomics. 262: 73-84. PMID 10503538 DOI: 10.1007/S004380051061 |
0.452 |
|
| 1999 |
Stevens AM, Fujita N, Ishihama A, Greenberg EP. Involvement of the RNA polymerase alpha-subunit C-terminal domain in LuxR-dependent activation of the Vibrio fischeri luminescence genes. Journal of Bacteriology. 181: 4704-7. PMID 10419977 DOI: 10.1128/Jb.181.15.4704-4707.1999 |
0.512 |
|
| 1999 |
Colland F, Fujita N, Kotlarz D, Bown JA, Meares CF, Ishihama A, Kolb A. Positioning of sigma(S), the stationary phase sigma factor, in Escherichia coli RNA polymerase-promoter open complexes. The Embo Journal. 18: 4049-59. PMID 10406809 DOI: 10.1093/Emboj/18.14.4049 |
0.491 |
|
| 1999 |
Jishage M, Ishihama A. Transcriptional organization and in vivo role of the Escherichia coli rsd gene, encoding the regulator of RNA polymerase sigma D. Journal of Bacteriology. 181: 3768-3776. PMID 10368152 DOI: 10.1128/Jb.181.12.3768-3776.1999 |
0.541 |
|
| 1999 |
Ishihama A. Modulation of the nucleoid, the transcription apparatus, and the translation machinery in bacteria for stationary phase survival. Genes to Cells. 4: 135-143. PMID 10320479 DOI: 10.1046/J.1365-2443.1999.00247.X |
0.402 |
|
| 1999 |
Burns HD, Ishihama A, Minchin SD. Open complex formation during transcription initiation at the Escherichia coli galP1 promoter: the role of the RNA polymerase alpha subunit at promoters lacking an UP-element. Nucleic Acids Research. 27: 2051-6. PMID 10198440 DOI: 10.1093/Nar/27.9.2051 |
0.494 |
|
| 1999 |
Masunaga K, Mizumoto K, Kato H, Ishihama A, Toyoda T. Molecular mapping of influenza virus RNA polymerase by site-specific antibodies. Virology. 256: 130-141. PMID 10087233 DOI: 10.1006/Viro.1999.9625 |
0.433 |
|
| 1999 |
Watanabe T, Honda A, Iwata A, Ueda S, Hibi T, Ishihama A. Isolation from tobacco mosaic virus-infected tobacco of a solubilized template-specific RNA-dependent RNA polymerase containing a 126K/183K protein heterodimer. Journal of Virology. 73: 2633-40. PMID 10074108 DOI: 10.1128/Jvi.73.4.2633-2640.1999 |
0.468 |
|
| 1999 |
Ishihama A, Kimura M, Mitsuzawa H. Subunits of yeast RNA polymerases: structure and function. Current Opinion in Microbiology. 1: 190-6. PMID 10066472 DOI: 10.1016/s1369-5274(98)80010-6 |
0.41 |
|
| 1999 |
Wlassoff WA, Kimura M, Ishihama A. Functional organization of two large subunits of the fission yeast Schizosaccharomyces pombe RNA polymerase II. Location of the catalytic sites. The Journal of Biological Chemistry. 274: 5104-13. PMID 9988759 DOI: 10.1074/Jbc.274.8.5104 |
0.497 |
|
| 1999 |
Harada Y, Funatsu T, Murakami K, Nonoyama Y, Ishihama A, Yanagida T. Single-molecule imaging of RNA polymerase-DNA interactions in real time Biophysical Journal. 76: 709-715. PMID 9929475 DOI: 10.1016/S0006-3495(99)77237-1 |
0.611 |
|
| 1999 |
Prost JF, Nègre D, Oudot C, Murakami K, Ishihama A, Cozzone AJ, Cortay JC. Cra-dependent transcriptional activation of the icd gene of Escherichia coli. Journal of Bacteriology. 181: 893-8. PMID 9922253 DOI: 10.1128/Jb.181.3.893-898.1999 |
0.689 |
|
| 1999 |
Bown JA, Owens JT, Meares CF, Fujita N, Ishihama A, Busby SJ, Minchin SD. Organization of open complexes at Escherichia coli promoters. Location of promoter DNA sites close to region 2.5 of the sigma70 subunit of RNA polymerase. The Journal of Biological Chemistry. 274: 2263-70. PMID 9890989 DOI: 10.1074/Jbc.274.4.2263 |
0.492 |
|
| 1999 |
Prost J, Nègre D, Oudot C, Murakami K, Ishihama A, Cozzone AJ, Cortay J. Cra-Dependent Transcriptional Activation of theicd Gene of Escherichia coli Journal of Bacteriology. 181: 893-898. DOI: 10.1128/jb.181.3.893-898.1999 |
0.645 |
|
| 1999 |
Nomura T, Fujita N, Ishihama A. Mapping of Subunit−Subunit Contact Surfaces on the β Subunit ofEscherichia coliRNA Polymerase† Biochemistry. 38: 1346-1355. DOI: 10.1021/Bi982381N |
0.33 |
|
| 1998 |
Ryu S, Fujita N, Ishihama A, Adhya S. GalR-mediated repression and activation of hybrid lacUV5 promoter: differential contacts with RNA polymerase Gene. 223: 235-245. PMID 9858739 DOI: 10.1016/S0378-1119(98)00237-6 |
0.518 |
|
| 1998 |
Sakurai H, Kimura M, Ishihama A. Identification Of The Gene And The Protein Of Rna Polymerase Ii Subunit 9 (Rpb9) From The Fission Yeast Schizosaccharomyces Pombe Gene. 221: 11-16. PMID 9852944 DOI: 10.1016/S0378-1119(98)00449-1 |
0.488 |
|
| 1998 |
Apirakaramwong A, Fukuchi J, Kashiwagi K, Kakinuma Y, Ito E, Ishihama A, Igarashi K. Enhancement of cell death due to decrease in Mg2+ uptake by OmpC (cation-selective porin) deficiency in ribosome modulation factor-deficient mutant. Biochemical and Biophysical Research Communications. 251: 482-487. PMID 9792800 DOI: 10.1006/Bbrc.1998.9494 |
0.308 |
|
| 1998 |
Ballesteros M, Kusano S, Ishihama A, Vicente M. The ftsQ1p gearbox promoter of Escherichia coli is a major sigma S‐dependent promoter in the ddlB–ftsA region Molecular Microbiology. 30: 419-430. PMID 9791185 DOI: 10.1046/J.1365-2958.1998.01077.X |
0.527 |
|
| 1998 |
Wang P, Yang J, Ishihama A, Pittard AJ. Demonstration that the TyrR Protein and RNA Polymerase Complex Formed at the Divergent P3 Promoter Inhibits Binding of RNA Polymerase to the Major Promoter, P1, of the aroP Gene ofEscherichia coli Journal of Bacteriology. 180: 5466-5472. PMID 9765583 DOI: 10.1128/Jb.180.20.5466-5472.1998 |
0.426 |
|
| 1998 |
Miyao T, Honda A, Qu Z, Ishihama A. Mapping of Rpb3 and Rpb5 contact sites on two large subunits, Rpb1 and Rpb2, of the RNA polymerase II from fission yeast. Molecular Genetics and Genomics. 259: 123-129. PMID 9738888 DOI: 10.1007/S004380050796 |
0.485 |
|
| 1998 |
Honda A, Mizumoto K, Ishihama A. Identification of the 5' terminal structure of influenza virus genome RNA by a newly developed enzymatic method. Virus Research. 55: 199-206. PMID 9725672 DOI: 10.1016/S0168-1702(98)00048-3 |
0.465 |
|
| 1998 |
Bertoni G, Fujita N, Ishihama A, Lorenzo Vd. Active recruitment of σ54‐RNA polymerase to the Pu promoter of Pseudomonas putida: role of IHF and αCTD The Embo Journal. 17: 5120-5128. PMID 9724648 DOI: 10.1093/Emboj/17.17.5120 |
0.49 |
|
| 1998 |
Chatterji D, Fujita N, Ishihama A. The mediator for stringent control, ppGpp, binds to the β‐subunit of Escherichia coli RNA polymerase Genes to Cells. 3: 279-287. PMID 9685179 DOI: 10.1046/J.1365-2443.1998.00190.X |
0.523 |
|
| 1998 |
Mukherjee A, Cui Y, Ma W, Liu Y, Ishihama A, Eisenstark A, Chatterjee AK. RpoS (sigma-S) controls expression of rsmA, a global regulator of secondary metabolites, harpin, and extracellular proteins in Erwinia carotovora. Journal of Bacteriology. 180: 3629-34. PMID 9658007 DOI: 10.1128/Jb.180.14.3629-3634.1998 |
0.363 |
|
| 1998 |
Ozoline ON, Fujita N, Murakami K, Ishihama A. Monitoring Of Rna Polymerase-Dna Up Element Interaction By A Fluorescent Probe Conjugated To Alpha Subunit Febs Journal. 253: 371-381. PMID 9654086 DOI: 10.1046/J.1432-1327.1998.2530371.X |
0.639 |
|
| 1998 |
Nagai S, Yagihashi T, Ishihama A. An avian pathogenic Escherichia coli strain produces a hemolysin, the expression of which is dependent on cyclic AMP receptor protein gene function. Veterinary Microbiology. 60: 227-238. PMID 9646453 DOI: 10.1016/S0378-1135(98)00144-8 |
0.374 |
|
| 1998 |
Ishiguro A, Kimura M, Yasui K, Iwata A, Ueda S, Ishihama A. Two large subunits of the fission yeast RNA polymerase II provide platforms for the assembly of small subunits Journal of Molecular Biology. 279: 703-712. PMID 9642054 DOI: 10.1006/Jmbi.1998.1823 |
0.428 |
|
| 1998 |
Sun W, Hattman S, Fujita N, Ishihama A. Activation of Bacteriophage Mu momTranscription by C Protein Does Not Require Specific Interaction with the Carboxyl-Terminal Region of the α or ς70Subunit of Escherichia coli RNA Polymerase Journal of Bacteriology. 180: 3257-3259. PMID 9620983 DOI: 10.1128/Jb.180.12.3257-3259.1998 |
0.543 |
|
| 1998 |
Owens JT, Miyake R, Murakami K, Chmura AJ, Fujita N, Ishihama A, Meares CF. Mapping the sigma70 subunit contact sites on Escherichia coli RNA polymerase with a sigma70-conjugated chemical protease. Proceedings of the National Academy of Sciences of the United States of America. 95: 6021-6. PMID 9600910 DOI: 10.1073/Pnas.95.11.6021 |
0.576 |
|
| 1998 |
Jishage M, Ishihama A. A stationary phase protein in Escherichia coli with binding activity to the major σ subunit of RNA polymerase Proceedings of the National Academy of Sciences of the United States of America. 95: 4953-4958. PMID 9560209 DOI: 10.1073/Pnas.95.9.4953 |
0.501 |
|
| 1998 |
Yasui K, Ishiguro A, Ishihama A. Location of subunit-subunit contact sites on RNA polymerase II subunit 3 from the fission yeast Schizosaccharomyces pombe. Biochemistry. 37: 5542-5548. PMID 9548938 DOI: 10.1021/Bi972939B |
0.475 |
|
| 1998 |
Nègre D, Oudot C, Prost JF, Murakami K, Ishihama A, Cozzone AJ, Cortay JC. FruR-mediated transcriptional activation at the ppsA promoter of Escherichia coli. Journal of Molecular Biology. 276: 355-65. PMID 9512708 DOI: 10.1006/Jmbi.1997.1548 |
0.695 |
|
| 1998 |
Ozoline ON, Murakami K, Negishi T, Fujita N, Ishihama A. Specific fluorescent labeling of two functional domains in RNA polymerase alpha subunit. Proteins. 30: 183-92. PMID 9489926 DOI: 10.1002/(Sici)1097-0134(19980201)30:2<183::Aid-Prot8>3.0.Co;2-O |
0.6 |
|
| 1997 |
Thomas MS, Zo C, Ishihama A, Glass RE. The effect of a nested set of C-terminal substituted deletions on the function of the α subunit of escherichia coli RNA polymerase International Journal of Biochemistry and Cell Biology. 29: 1475-1483. PMID 9570142 DOI: 10.1016/S1357-2725(97)00091-5 |
0.324 |
|
| 1997 |
Rajkumari K, Ishihama A, Gowrishankar J. Evidence for transcription attenuation rendering cryptic a sigmaS-dependent promoter of the osmotically regulated proU operon of Salmonella typhimurium. Journal of Bacteriology. 179: 7169-73. PMID 9371467 DOI: 10.1128/jb.179.22.7169-7173.1997 |
0.388 |
|
| 1997 |
Kusano S, Ishihama A. Functional interaction of Escherichia coli RNA polymerase with inorganic polyphosphate Genes to Cells. 2: 433-441. PMID 9366549 DOI: 10.1046/J.1365-2443.1997.13203301320330.X |
0.507 |
|
| 1997 |
Asano Y, Ishihama A. Identification of two nucleotide-binding domains on the PB1 subunit of influenza virus RNA polymerase. Journal of Biochemistry. 122: 627-634. PMID 9348094 DOI: 10.1093/Oxfordjournals.Jbchem.A021799 |
0.441 |
|
| 1997 |
Murakami K, Owens JT, Belyaeva TA, Meares CF, Busby SJ, Ishihama A. Positioning of two alpha subunit carboxy-terminal domains of RNA polymerase at promoters by two transcription factors. Proceedings of the National Academy of Sciences of the United States of America. 94: 11274-8. PMID 9326599 DOI: 10.1073/Pnas.94.21.11274 |
0.65 |
|
| 1997 |
Kimura M, Ishiguro A, Ishihama A. RNA polymerase II subunits 2, 3, and 11 form a core subassembly with DNA binding activity. The Journal of Biological Chemistry. 272: 25851-5. PMID 9325316 DOI: 10.1074/Jbc.272.41.25851 |
0.503 |
|
| 1997 |
Choy HE, Hanger RR, Aki T, Mahoney M, Murakami K, Ishihama A, Adhya S. Repression and activation of promoter-bound RNA polymerase activity by Gal repressor. Journal of Molecular Biology. 272: 293-300. PMID 9325090 DOI: 10.1006/Jmbi.1997.1221 |
0.673 |
|
| 1997 |
Yang J, Murakami K, Camakaris H, Fujita N, Ishihama A, Pittard AJ. Amino acid residues in the alpha-subunit C-terminal domain of Escherichia coli RNA polymerase involved in activation of transcription from the mtr promoter. Journal of Bacteriology. 179: 6187-91. PMID 9324270 DOI: 10.1128/Jb.179.19.6187-6191.1997 |
0.671 |
|
| 1997 |
Sakurai H, Ishihama A. Gene Organization And Protein Sequence Of The Small Subunits Of Schizosaccharomyces Pombe Rna Polymerase Ii Gene. 196: 165-174. PMID 9322754 DOI: 10.1016/S0378-1119(97)00222-9 |
0.472 |
|
| 1997 |
McFall SM, Klem TJ, Fujita N, Ishihama A, Chakrabarty AM. DNase I footprinting, DNA bending and in vitro transcription analyses of ClcR and CatR interactions with the clcABD promoter: Evidence of a conserved transcriptional activation mechanism Molecular Microbiology. 24: 965-976. PMID 9220004 DOI: 10.1046/J.1365-2958.1997.4041763.X |
0.526 |
|
| 1997 |
Kundu TK, Kusano S, Ishihama A. Promoter selectivity of Escherichia coli RNA polymerase sigmaF holoenzyme involved in transcription of flagellar and chemotaxis genes. Journal of Bacteriology. 179: 4264-9. PMID 9209042 DOI: 10.1128/Jb.179.13.4264-4269.1997 |
0.692 |
|
| 1997 |
Kang JG, Hahn MY, Ishihama A, Roe JH. Identification of sigma factors for growth phase-related promoter selectivity of RNA polymerases from Streptomyces coelicolor A3(2). Nucleic Acids Research. 25: 2566-73. PMID 9185565 DOI: 10.1093/Nar/25.13.2566 |
0.394 |
|
| 1997 |
Kusano S, Ishihama A. Stimulatory effect of trehalose on formation and activity of Escherichia coli RNA polymerase E sigma38 holoenzyme. Journal of Bacteriology. 179: 3649-3654. PMID 9171412 DOI: 10.1128/Jb.179.11.3649-3654.1997 |
0.451 |
|
| 1997 |
Ishihama A. A multi-functional enzyme with RNA polymerase and RNase activities: molecular anatomy of influenza virus RNA polymerase. Biochimie. 78: 1097-102. PMID 9150890 DOI: 10.1016/S0300-9084(97)86735-1 |
0.383 |
|
| 1997 |
Jeon YH, Yamazaki T, Otomo T, Ishihama A, Kyogoku Y. Flexible linker in the RNA polymerase alpha subunit facilitates the independent motion of the C-terminal activator contact domain Journal of Molecular Biology. 267: 953-962. PMID 9135123 DOI: 10.1006/Jmbi.1997.0902 |
0.382 |
|
| 1997 |
Chugani SA, Parsek MR, Hershberger CD, Murakami K, Ishihama A, Chakrabarty AM. Activation of the catBCA promoter: Probing the interaction of CatR and RNA polymerase through in vitro transcription Journal of Bacteriology. 179: 2221-2227. PMID 9079907 DOI: 10.1128/Jb.179.7.2221-2227.1997 |
0.52 |
|
| 1997 |
Kimura M, Ishihama A. Subunit assembly in vivo of Escherichia coli RNA polymerase: role of the amino-terminal assembly domain of alpha subunit. Genes to Cells : Devoted to Molecular & Cellular Mechanisms. 1: 517-28. PMID 9078382 DOI: 10.1046/J.1365-2443.1996.D01-258.X |
0.425 |
|
| 1997 |
Luo J, Sharif KA, Jin R, Fujita N, Ishihama A, Krakow JS. Molecular anatomy of the beta' subunit of the E. coli RNA polymerase: identification of regions involved in polymerase assembly. Genes to Cells : Devoted to Molecular & Cellular Mechanisms. 1: 819-27. PMID 9077436 DOI: 10.1046/J.1365-2443.1996.700269.X |
0.422 |
|
| 1997 |
Murakami K, Kimura M, Owens JT, Meares CF, Ishihama A. The two alpha subunits of Escherichia coli RNA polymerase are asymmetrically arranged and contact different halves of the DNA upstream element. Proceedings of the National Academy of Sciences of the United States of America. 94: 1709-14. PMID 9050843 DOI: 10.1073/Pnas.94.5.1709 |
0.617 |
|
| 1997 |
Boucher PE, Murakami K, Ishihama A, Stibitz S. Nature of DNA binding and RNA polymerase interaction of the Bordetella pertussis BvgA transcriptional activator at the fha promoter. Journal of Bacteriology. 179: 1755-1763. PMID 9045838 DOI: 10.1128/Jb.179.5.1755-1763.1997 |
0.634 |
|
| 1997 |
Nègre D, Bonod-Bidaud C, Oudot C, Prost JF, Kolb A, Ishihama A, Cozzone AJ, Cortay JC. DNA flexibility of the UP element is a major determinant for transcriptional activation at the Escherichia coli acetate promoter. Nucleic Acids Research. 25: 713-8. PMID 9016619 DOI: 10.1093/Nar/25.4.713 |
0.539 |
|
| 1997 |
Jishage M, Ishihama A. Variation in RNA polymerase sigma subunit composition within different stocks of Escherichia coli W3110. Journal of Bacteriology. 179: 959-963. PMID 9006056 DOI: 10.1128/Jb.179.3.959-963.1997 |
0.425 |
|
| 1997 |
Tang Y, Murakami K, Ishihama A, deHaseth PL. Upstream interactions at the lambda pRM promoter are sequence nonspecific and activate the promoter to a lesser extent than an introduced UP element of an rRNA promoter. Journal of Bacteriology. 178: 6945-51. PMID 8955318 DOI: 10.1128/Jb.178.23.6945-6951.1996 |
0.651 |
|
| 1996 |
Miyao T, Yasui K, Sakurai H, Yamagishi M, Ishihama A. Molecular assembly of RNA polymerase II from the fission yeast Schizosaccharomyces pombe: subunit-subunit contact network involving Rpb5. Genes to Cells. 1: 843-854. PMID 9077438 DOI: 10.1046/J.1365-2443.1996.730274.X |
0.511 |
|
| 1996 |
Sakurai H, Miyao T, Ishihama A. Subunit composition of RNA polymerase II from the fission yeast Schizosaccharomyces pombe Gene. 180: 63-67. PMID 8973348 DOI: 10.1016/S0378-1119(96)00406-4 |
0.434 |
|
| 1996 |
Artsimovitch I, Murakami K, Ishihama A, Howe MM. Transcription activation by the bacteriophage Mu Mor protein requires the C-terminal regions of both alpha and sigma70 subunits of Escherichia coli RNA polymerase. The Journal of Biological Chemistry. 271: 32343-8. PMID 8943297 DOI: 10.1074/Jbc.271.50.32343 |
0.646 |
|
| 1996 |
Toyoda T, Kobayashi M, Nakada S, Ishihama A. Molecular dissection of influenza virus RNA polymerase: PB1 subunit alone is able to catalyze RNA synthesis. Virus Genes. 12: 155-163. PMID 8879132 DOI: 10.1007/Bf00572954 |
0.462 |
|
| 1996 |
Jair K, Fawcett WP, Fujita N, Ishihama A, Wolf RE. Ambidextrous transcriptional activation by SoxS: requirement for the C-terminal domain of the RNA polymerase alpha subunit in a subset of Escherichia coli superoxide-inducible genes. Molecular Microbiology. 19: 307-317. PMID 8825776 DOI: 10.1046/J.1365-2958.1996.368893.X |
0.533 |
|
| 1996 |
Toyoda T, Adyshev DM, Kobayashi M, Iwata A, Ishihama A. Molecular Assembly Of The Influenza Virus Rna Polymerase : Determination Of The Subunit-Subunit Contact Sites Journal of General Virology. 77: 2149-2157. PMID 8811014 DOI: 10.1099/0022-1317-77-9-2149 |
0.472 |
|
| 1996 |
Imamura R, Yamanaka K, Ogura T, Hiraga S, Fujita N, Ishihama A, Niki H. Identification of the cpdA gene encoding cyclic 3',5'-adenosine monophosphate phosphodiesterase in Escherichia coli. The Journal of Biological Chemistry. 271: 25423-9. PMID 8810311 DOI: 10.1074/Jbc.271.41.25423 |
0.407 |
|
| 1996 |
Jishage M, Iwata A, Ueda S, Ishihama A. Regulation of RNA polymerase sigma subunit synthesis in Escherichia coli: intracellular levels of four species of sigma subunit under various growth conditions. Journal of Bacteriology. 178: 5447-5451. PMID 8808934 DOI: 10.1128/Jb.178.18.5447-5451.1996 |
0.363 |
|
| 1996 |
Fujita N, Ishihama A. Reconstitution of RNA polymerase Methods in Enzymology. 273: 121-130. PMID 8791604 DOI: 10.1016/S0076-6879(96)73011-2 |
0.408 |
|
| 1996 |
Rajkumari K, Kusano S, Ishihama A, Mizuno T, Gowrishankar J. Effects of H-NS and potassium glutamate on sigmaS- and sigma70-directed transcription in vitro from osmotically regulated P1 and P2 promoters of proU in Escherichia coli. Journal of Bacteriology. 178: 4176-81. PMID 8763946 DOI: 10.1128/jb.178.14.4176-4181.1996 |
0.325 |
|
| 1996 |
Giladi H, Murakami K, Ishihama A, Oppenheim AB. Identification of an UP element within the IHF binding site at the PL1-PL2 tandem promoter of bacteriophage lambda. Journal of Molecular Biology. 260: 484-91. PMID 8759315 DOI: 10.1006/Jmbi.1996.0416 |
0.626 |
|
| 1996 |
Belyaeva TA, Bown JA, Fujita N, Ishihama A, Busby SJW. Location of the C-Terminal Domain of the RNA Polymerase α Subunit in Different Open Complexes at the Escherichia Coli Galactose Operon Regulatory Region Nucleic Acids Research. 24: 2243-2251. PMID 8710492 DOI: 10.1093/Nar/24.12.2243 |
0.495 |
|
| 1996 |
Kobayashi M, Toyoda T, Ishihama A. Influenza virus PB1 protein is the minimal and essential subunit of RNA polymerase Archives of Virology. 141: 525-539. PMID 8645093 DOI: 10.1007/Bf01718315 |
0.496 |
|
| 1996 |
Jair KW, Yu X, Skarstad K, Thöny B, Fujita N, Ishihama A, Wolf RE. Transcriptional activation of promoters of the superoxide and multiple antibiotic resistance regulons by Rob, a binding protein of the Escherichia coli origin of chromosomal replication Journal of Bacteriology. 178: 2507-2513. PMID 8626315 DOI: 10.1128/Jb.178.9.2507-2513.1996 |
0.521 |
|
| 1996 |
Kawagishi-Kobayashi M, Yamamoto M, Ishihama A. Mutational analysis of the RNase-like domain in subunit 2 of fission yeast RNA polymerase II. Molecular Genetics and Genomics. 250: 1-6. PMID 8569679 DOI: 10.1007/Bf02191819 |
0.471 |
|
| 1996 |
Kusano S, Ding Q, Fujita N, Ishihama A. Promoter Selectivity of Escherichia coli RNA Polymerase E and E Holoenzymes EFFECT OF DNA SUPERCOILING Journal of Biological Chemistry. 271: 1998-2004. PMID 8567650 DOI: 10.1074/Jbc.271.4.1998 |
0.432 |
|
| 1996 |
Kimura M, Ishihama A. Functional map of the alpha subunit of Escherichia coli RNA polymerase: amino acid substitution within the amino-terminal assembly domain. Journal of Molecular Biology. 254: 342-9. PMID 7490753 DOI: 10.1006/Jmbi.1995.0621 |
0.36 |
|
| 1996 |
Murakami K, Fujita N, Ishihama A. Transcription factor recognition surface on the RNA polymerase alpha subunit is involved in contact with the DNA enhancer element. The Embo Journal. 15: 4358-4367. DOI: 10.1002/J.1460-2075.1996.Tb00809.X |
0.645 |
|
| 1995 |
Toyoda T, Asano Y, Ishihama A. Role of GTPase activity of murine Mx1 protein in nuclear localization and anti-influenza virus activity Journal of General Virology. 76: 1867-1869. PMID 9049394 DOI: 10.1099/0022-1317-76-7-1867 |
0.322 |
|
| 1995 |
Shinkawa H, Fujita N, Shiina T, Tanaka K, Takahashi H, Ishihama A, Nimi O. Purification and characterization of RNA polymerase holoenzyme (E sigma B) from vegetative-phase mycelia of Streptomyces griseus. Journal of Biochemistry. 118: 488-493. PMID 8690706 DOI: 10.1093/Oxfordjournals.Jbchem.A124934 |
0.478 |
|
| 1995 |
Azuma Y, Yasui K, Yamagishi M, Ishihama A. Isolation of Thermolabile Mutant RNA Polymerase II from Fission Yeast Schizosaccharomyces pombe with Mutations in the Subunit 3 Gene Journal of Biochemistry. 118: 216-220. PMID 8537315 DOI: 10.1093/Oxfordjournals.Jbchem.A124881 |
0.491 |
|
| 1995 |
Nakagawa Y, Kimura N, Toyoda T, Mizumoto K, Ishihama A, Oda K, Nakada S. The RNA polymerase PB2 subunit is not required for replication of the influenza virus genome but is involved in capped mRNA synthesis. Journal of Virology. 69: 728-733. PMID 7815536 DOI: 10.1128/Jvi.69.2.728-733.1995 |
0.485 |
|
| 1995 |
Lawley B, Fujita N, Ishihama A, Pittard AJ. The TyrR protein of Escherichia coli is a class I transcription activator. Journal of Bacteriology. 177: 238-241. PMID 7798138 DOI: 10.1128/Jb.177.1.238-241.1995 |
0.523 |
|
| 1995 |
Kimura M, Ishihama A. Functional map of the alpha subunit of Escherichia coli RNA polymerase: insertion analysis of the amino-terminal assembly domain. Journal of Molecular Biology. 248: 756-67. PMID 7752238 DOI: 10.1006/Jmbi.1995.0258 |
0.388 |
|
| 1995 |
Negishi T, Fujita N, Ishihama A. Structural map of the alpha subunit of Escherichia coli RNA polymerase: structural domains identified by proteolytic cleavage. Journal of Molecular Biology. 248: 723-728. PMID 7752234 DOI: 10.1006/Jmbi.1995.0254 |
0.464 |
|
| 1995 |
Tanaka K, Kusano S, Fujita N, Ishihama A, Takahashi H. Promoter determinants for Escherichia coli RNA polymerase holoenzyme containing sigma 38 (the rpoS gene product). Nucleic Acids Research. 23: 827-834. PMID 7708499 DOI: 10.1093/Nar/23.5.827 |
0.491 |
|
| 1995 |
Kolb A, Kotlarz D, Kusano S, Ishihama A. Selectivity of the Escherichia coli RNA polymerase E sigma 38 for overlapping promoters and ability to support CRP activation. Nucleic Acids Research. 23: 819-826. PMID 7708498 DOI: 10.1093/Nar/23.5.819 |
0.434 |
|
| 1995 |
Wada A, Igarashi K, Yoshimura S, Aimoto S, Ishihama A. Ribosome Modulation Factor: Stationary Growth Phase-Specific Inhibitor of Ribosome Functions from Escherichia coli Biochemical and Biophysical Research Communications. 214: 410-417. PMID 7677746 DOI: 10.1006/Bbrc.1995.2302 |
0.371 |
|
| 1995 |
Kumar A, Williamson HS, Fujita N, Ishihama A, Hayward RS. A partially functional 245-amino-acid internal deletion derivative of Escherichia coli sigma 70. Journal of Bacteriology. 177: 5193-6. PMID 7665506 DOI: 10.1128/Jb.177.17.5193-5196.1995 |
0.419 |
|
| 1995 |
Liu X, Fujita N, Ishihama A, Matsumura P. The C-terminal region of the alpha subunit of Escherichia coli RNA polymerase is required for transcriptional activation of the flagellar level II operons by the FlhD/FlhC complex. Journal of Bacteriology. 177: 5186-8. PMID 7665504 DOI: 10.1128/Jb.177.17.5186-5188.1995 |
0.534 |
|
| 1995 |
Fukuchi J, Kashiwagi K, Yamagishi M, Ishihama A, Igarashi K. Decrease in Cell Viability Due to the Accumulation of Spermidine in Spermidine Acetyltransferase-deficient Mutant of Escherichia coli Journal of Biological Chemistry. 270: 18831-18835. PMID 7642535 DOI: 10.1074/Jbc.270.32.18831 |
0.391 |
|
| 1995 |
Asano Y, Mizumoto K, Maruyama T, Ishihama A. Photoaffinity labeling of influenza virus RNA polymerase PB1 subunit with 8-azido GTP. Journal of Biochemistry. 117: 677-682. PMID 7629040 DOI: 10.1093/Oxfordjournals.Jbchem.A124762 |
0.454 |
|
| 1995 |
Tao K, Zou C, Fujita N, Ishihama A. Mapping of the OxyR protein contact site in the C-terminal region of RNA polymerase alpha subunit. Journal of Bacteriology. 177: 6740-6744. PMID 7592462 DOI: 10.1128/Jb.177.23.6740-6744.1995 |
0.515 |
|
| 1995 |
Yamagishi M, Mizumoto K, Ishihama A. Isolation Of Temperature-Sensitive Mutants For Mrna Capping Enzyme In Saccharomyces Cerevisiae Molecular Genetics and Genomics. 249: 147-154. PMID 7500935 DOI: 10.1007/Bf00290360 |
0.363 |
|
| 1995 |
Jeon YH, Negishi T, Shirakawa M, Yamazaki T, Fujita N, Ishihama A, Kyogoku Y. Solution Structure of the Activator Contact Domain of the RNA Polymerase α Subunit Science. 270: 1495-1497. PMID 7491496 DOI: 10.1126/Science.270.5241.1495 |
0.477 |
|
| 1995 |
Ding Q, Kusano S, Villarejo M, Ishihama A. Promoter selectivity control of Escherichia coli RNA polymerase by ionic strength: differential recognition of osmoregulated promoters by E sigma D and E sigma S holoenzymes. Molecular Microbiology. 16: 649-656. PMID 7476160 DOI: 10.1111/J.1365-2958.1995.Tb02427.X |
0.488 |
|
| 1995 |
Choy HE, Park SW, Aki T, Parrack P, Fujita N, Ishihama A, Adhya S. Repression and activation of transcription by Gal and Lac repressors: involvement of alpha subunit of RNA polymerase. The Embo Journal. 14: 4523-4529. DOI: 10.1002/J.1460-2075.1995.Tb00131.X |
0.507 |
|
| 1994 |
Kumar A, Grimes B, Fujita N, Makino K, Malloch RA, Hayward RS, Ishihama A. Role of the sigma70 subunit of Escherichia coli RNA polymerase in transcription activation Journal of Molecular Biology. 235: 405-413. PMID 8289270 DOI: 10.1006/Jmbi.1994.1001 |
0.562 |
|
| 1994 |
Kajitani M, Kato A, Wada A, Inokuchi Y, Ishihama A. Regulation of the Escherichia coli hfq gene encoding the host factor for phage Q beta. Journal of Bacteriology. 176: 531-534. PMID 8288550 DOI: 10.1128/Jb.176.2.531-534.1994 |
0.395 |
|
| 1994 |
Fujita N, Mori H, Yura T, Ishihama A. Systematic sequencing of the Escherichia coli genome: analysis of the 2.4–4.1 min (110,917–193,643 bp) region Nucleic Acids Research. 22: 1637-1639. PMID 8202364 DOI: 10.1093/Nar/22.9.1637 |
0.327 |
|
| 1994 |
Ishihama A, Barbier P. Molecular anatomy of viral RNA-directed RNA polymerases. Archives of Virology. 134: 235-258. PMID 8129614 DOI: 10.1007/Bf01310564 |
0.431 |
|
| 1994 |
Zou C, Fujita N, Ishihama A. Asymmetric arrangement of two alpha subunits within Escherichia coli RNA polymerase Involvement of one alpha subunit in contact with cAMP receptor protein Journal of Molecular Biology. 236: 1283-1288. PMID 8126719 DOI: 10.1016/0022-2836(94)90057-4 |
0.455 |
|
| 1994 |
Takahashi K, Hattori T, Nakanishi T, Nohno T, Fujita N, Ishihama A, Taniguchi S. Repression of in vitro transcription of the Escherichia coli fnr and nar X genes by FNR protein Febs Letters. 340: 59-64. PMID 8119409 DOI: 10.1016/0014-5793(94)80173-8 |
0.442 |
|
| 1994 |
Kimura M, Fujita N, Ishihama A. Functional map of the alpha subunit of Escherichia coli RNA polymerase. Deletion analysis of the amino-terminal assembly domain. Journal of Molecular Biology. 242: 107-15. PMID 8089834 DOI: 10.1006/Jmbi.1994.1562 |
0.428 |
|
| 1994 |
Toyoda T, Kobayashi M, Ishihama A. Replication in vitro of the influenza virus genome: selective dissociation of RNA replicase from virus-infected cell ribonucleoprotein complexes. Archives of Virology. 136: 269-286. PMID 8031233 DOI: 10.1007/Bf01321057 |
0.436 |
|
| 1994 |
Toriyama S, Takahashi M, Sano Y, Shimizu T, Ishihama A. Nucleotide sequence of RNA 1, the largest genomic segment of rice stripe virus, the prototype of the tenuiviruses Journal of General Virology. 75: 3569-3579. PMID 7996149 DOI: 10.1099/0022-1317-75-12-3569 |
0.425 |
|
| 1994 |
Attey A, Belyaeva T, savery N, Hoggett J, Fujita N, Ishihama A, Busby S. Interactions between the cyclic AMP receptor protein and the Alpha subunit of RNA polymerase at the Escherichia Coli galactose operon P1 Promoter Nucleic Acids Research. 22: 4375-4380. PMID 7971267 DOI: 10.1093/Nar/22.21.4375 |
0.502 |
|
| 1994 |
Kobayashi M, Toyoda T, Adyshev DM, Azuma Y, Ishihama A. Molecular dissection of influenza virus nucleoprotein: deletion mapping of the RNA binding domain. Journal of Virology. 68: 8433-8436. PMID 7966640 DOI: 10.1128/Jvi.68.12.8433-8436.1994 |
0.437 |
|
| 1994 |
Hamamatsu C, Ishihama A. Ambisense RNA genome of rice stripe virus Uirusu. 44: 19-25. PMID 7856115 DOI: 10.2222/Jsv.44.19 |
0.33 |
|
| 1994 |
Busby S, West D, Lawes M, Webster C, Ishihama A, Kolb A. Transcription activation by the Escherichia coli cyclic AMP receptor protein. Receptors bound in tandem at promoters can interact synergistically. Journal of Molecular Biology. 241: 341-52. PMID 7520503 DOI: 10.1006/Jmbi.1994.1511 |
0.464 |
|
| 1993 |
Hamamatsu C, Toriyama S, Toyoda T, Ishihama A. Ambisense coding strategy of the rice stripe virus genome: in vitro translation studies. Journal of General Virology. 74: 1125-1131. PMID 8509762 DOI: 10.1099/0022-1317-74-6-1125 |
0.452 |
|
| 1993 |
Tao K, Fujita N, Ishihama A. Involvement of the RNA polymerase α subunit C-terminal region in co-operative interaction and transcriptional activation with OxyR protein Molecular Microbiology. 7: 859-864. PMID 8483417 DOI: 10.1111/J.1365-2958.1993.Tb01176.X |
0.546 |
|
| 1993 |
Tanaka K, Takayanagi Y, Fujita N, Ishihama A, Takahashi H. Heterogeneity of the principal sigma factor in Escherichia coli: the rpoS gene product, sigma 38, is a second principal sigma factor of RNA polymerase in stationary-phase Escherichia coli. Proceedings of the National Academy of Sciences of the United States of America. 90: 3511-3515. PMID 8475100 DOI: 10.1073/Pnas.90.8.3511 |
0.453 |
|
| 1993 |
Takahashi M, Toriyama S, Hamamatsu C, Ishihama A. Nucleotide sequence and possible ambisense coding strategy of rice stripe virus RNA segment 2 Journal of General Virology. 74: 769-773. PMID 8468559 DOI: 10.1099/0022-1317-74-4-769 |
0.423 |
|
| 1993 |
Sakumi K, Igarashi K, Sekiguchi M, Ishihama A. The Ada protein is a class I transcription factor of Escherichia coli. Journal of Bacteriology. 175: 2455-7. PMID 8468304 DOI: 10.1128/jb.175.8.2455-2457.1993 |
0.475 |
|
| 1993 |
Kawagishi M, Yamagishi M, Ishihama A. Cloning and sequence determination of the Schizosaccharomyces pombe rpb2 gene encoding the subunit 2 of RNA polymerase II. Nucleic Acids Research. 21: 469-73. PMID 8441660 DOI: 10.1093/NAR/21.3.469 |
0.348 |
|
| 1993 |
Kolb A, Igarashi K, Ishihama A, Lavigne M, Buckle M, Buc H. E.coli RNA polymerase, deleted in the C-terminal part of its α-subunit, interacts differently with the cAMP-CRP complex at the lacP1 and at the gaP1 promoter Nucleic Acids Research. 21: 319-326. PMID 8382795 DOI: 10.1093/Nar/21.2.319 |
0.519 |
|
| 1993 |
Azuma Y, Yamagishi M, Ishihama A. Subunits of the Schizosaccharomyces pombe RNA polymerase II: enzyme purification and structure of the subunit 3 gene. Nucleic Acids Research. 21: 3749-54. PMID 8367291 DOI: 10.1093/NAR/21.16.3749 |
0.39 |
|
| 1993 |
Kumar A, Malloch RA, Fujita N, Smillie DA, Ishihama A, Hayward RS. The minus 35-recognition region of Escherichia coli sigma 70 is inessential for initiation of transcription at an "extended minus 10" promoter. Journal of Molecular Biology. 232: 406-18. PMID 8345519 DOI: 10.1006/jmbi.1993.1400 |
0.383 |
|
| 1993 |
Ross W, Gosink KK, Salomon J, Igarashi K, Zou C, Ishihama A, Severinov K, Gourse RL. A third recognition element in bacterial promoters: DNA binding by the α subunit of RNA polymerase Science. 262: 1407-1413. PMID 8248780 DOI: 10.1126/Science.8248780 |
0.497 |
|
| 1993 |
Lee HS, Ishihama A, Kustu S. The C terminus of the alpha subunit of RNA polymerase is not essential for transcriptional activation of sigma 54 holoenzyme. Journal of Bacteriology. 175: 2479-82. PMID 8096842 DOI: 10.1128/Jb.175.8.2479-2482.1993 |
0.403 |
|
| 1993 |
Nagai S, Yagihashi T, Ishihama A. DNA sequence analysis of an allelic variant of the Actinobacillus pleuropneumoniae-RTX-toxin I (ApxIA) from serotype 10 Microbial Pathogenesis. 15: 485-495. PMID 8007819 DOI: 10.1006/Mpat.1993.1096 |
0.361 |
|
| 1993 |
Yamagishi M, Matsushima H, Wada A, Sakagami M, Fujita N, Ishihama A. Regulation of the Escherichia coli rmf gene encoding the ribosome modulation factor : growth phase- and growth rate-dependent control The Embo Journal. 12: 625-630. DOI: 10.1002/J.1460-2075.1993.Tb05695.X |
0.385 |
|
| 1992 |
Ozaki M, Fujita N, Wada A, Ishihama A. Promoter selectivity of the stationary-phase forms of Escherichia coli RNA polymerase and conversion in vitro of the S1 form enzyme into a log-phase enzyme like form Nucleic Acids Research. 20: 257-261. PMID 1741250 DOI: 10.1093/Nar/20.2.257 |
0.449 |
|
| 1992 |
Yura T, Mori H, Nagai H, Nagata T, Ishihama A, Fujita N, Isono K, Mizobuchi K, Nakata A. Systematic sequencing of the Escherichia coli genome: analysis of the 0 – 2.4 min region Nucleic Acids Research. 20: 3305-3308. PMID 1630901 DOI: 10.1093/Nar/20.13.3305 |
0.337 |
|
| 1992 |
Gussin GN, Olson C, Igarashi K, Ishihama A. Activation defects caused by mutations in Escherichia coli rpoA are promoter specific Journal of Bacteriology. 174: 5156-5160. PMID 1629175 DOI: 10.1128/jb.174.15.5156-5160.1992 |
0.351 |
|
| 1992 |
Kobayashi M, Tuchiya K, Nagata K, Ishihama A. Reconstitution of influenza virus RNA polymerase from three subunits expressed using recombinant baculovirus system. Virus Research. 22: 235-45. PMID 1626419 DOI: 10.1016/0168-1702(92)90055-E |
0.364 |
|
| 1992 |
Nakayama M, Nagata K, Ishihama A. Enzymatic properties of the mouse Mx1 protein-associated GTPase. Virus Research. 22: 227-234. PMID 1626418 DOI: 10.1016/0168-1702(92)90054-D |
0.326 |
|
| 1992 |
Seong BL, Kobayashi M, Nagata K, Brownlee GG, Ishihama A. Comparison of two reconstituted systems for in vitro transcription and replication of influenza virus. Journal of Biochemistry. 111: 496-9. PMID 1618740 DOI: 10.1093/Oxfordjournals.Jbchem.A123786 |
0.491 |
|
| 1992 |
Kimura N, Nishida M, Nagata K, Ishihama A, Oda K, Nakada S. Transcription of a recombinant influenza virus RNA in cells that can express the influenza virus RNA polymerase and nucleoprotein genes. Journal of General Virology. 73: 1321-1328. PMID 1607855 DOI: 10.1099/0022-1317-73-6-1321 |
0.456 |
|
| 1992 |
Ueshima R, Fujita N, Ishihama A. Identification of Escherichia coli proteins cross-reacting with antibodies against region 2.2 peptide of RNA polymerase sigma subunit. Biochemical and Biophysical Research Communications. 184: 634-639. PMID 1575737 DOI: 10.1016/0006-291X(92)90636-Y |
0.391 |
|
| 1992 |
Barbier P, Takahashi M, Nakamura I, Toriyama S, Ishihama A. Solubilization and promoter analysis of RNA polymerase from rice stripe virus. Journal of Virology. 66: 6171-4. PMID 1527854 DOI: 10.1128/jvi.66.10.6171-6174.1992 |
0.367 |
|
| 1992 |
Ishihama A. Role of the RNA polymerase α subunit in transcription activation Molecular Microbiology. 6: 3283-3288. PMID 1484484 DOI: 10.1111/J.1365-2958.1992.Tb02196.X |
0.539 |
|
| 1992 |
Giladi H, Igarashi K, Ishihama A, Oppenheim AB. Stimulation of the phage λ pL promoter by integration host factor requires the carboxy terminus of the α-subunit of RNA polymerase Journal of Molecular Biology. 227: 985-990. PMID 1433303 DOI: 10.1016/0022-2836(92)90514-K |
0.547 |
|
| 1992 |
Tuchiya K, Matsuura Y, Kawai A, Ishihama A, Ueda S. Characterization of rabies virus glycoprotein expressed by recombinant baculovirus. Virus Research. 25: 1-13. PMID 1413990 DOI: 10.1016/0168-1702(92)90095-Q |
0.303 |
|
| 1992 |
Zou C, Fujita N, Igarashi K, Ishihama A. Mapping the cAMP receptor protein contact site on the α subunit of Escherichia coli RNA polymerase Molecular Microbiology. 6: 2599-2605. PMID 1333035 DOI: 10.1111/J.1365-2958.1992.Tb01437.X |
0.482 |
|
| 1992 |
Iwata A, Ueda S, Ishihama A, Hirai K. Sequence determination of cDNA clones of transcripts from the tumor-associated region of the Marek's disease virus genome. Virology. 187: 805-808. PMID 1312278 DOI: 10.1016/0042-6822(92)90483-6 |
0.39 |
|
| 1991 |
Yamanaka K, Ogasawara N, Yoshikawa H, Ishihama A, Nagata K. In vivo analysis of the promoter structure of the influenza virus RNA genome using a transfection system with an engineered RNA. Proceedings of the National Academy of Sciences of the United States of America. 88: 5369-73. PMID 2052614 DOI: 10.1073/Pnas.88.12.5369 |
0.485 |
|
| 1991 |
Harada H, Sakagami H, Nagata K, Oh-hara T, Kawazoe Y, Ishihama A, Hata N, Misawa Y, Terada H, Konno K. Possible involvement of lignin structure in anti-influenza virus activity. Antiviral Research. 15: 41-49. PMID 2035999 DOI: 10.1016/0166-3542(91)90039-T |
0.323 |
|
| 1991 |
Kajitani M, Ishihama A. Identification and sequence determination of the host factor gene for bacteriophage Qβ Nucleic Acids Research. 19: 1063-1066. PMID 2020545 DOI: 10.1093/Nar/19.5.1063 |
0.444 |
|
| 1991 |
Azuma Y, Yamagishi M, Ueshima R, Ishihama A. Cloning and sequence determination of the Schizosaccharomyces pombe rpb1 gene encoding the largest subunit of RNA polymerase II Nucleic Acids Research. 19: 461-468. PMID 2011520 DOI: 10.1093/Nar/19.3.461 |
0.487 |
|
| 1991 |
Kubota M, Yamazaki Y, Ishihama A. Random screening of promoters from Escherichia coli and classification based on the promoter strength. The Japanese Journal of Genetics. 66: 399-409. PMID 1954034 DOI: 10.1266/Jjg.66.399 |
0.373 |
|
| 1991 |
Yamanaka K, Nagata K, Ishihama A. Temporal control for translation of influenza virus mRNAs. Archives of Virology. 120: 33-42. PMID 1929878 DOI: 10.1007/Bf01310947 |
0.332 |
|
| 1991 |
Hayward RS, Igarashi K, Ishihama A. Functional specialization within the alpha-subunit of Escherichia coli RNA polymerase. Journal of Molecular Biology. 221: 23-9. PMID 1920407 DOI: 10.1016/0022-2836(91)80197-3 |
0.437 |
|
| 1991 |
Igarashi K, Hanamura A, Makino K, Aiba H, Mizuno T, Nakata A, Ishihama A. Functional map of the alpha subunit of Escherichia coli RNA polymerase: two modes of transcription activation by positive factors. Proceedings of the National Academy of Sciences of the United States of America. 88: 8958-8962. PMID 1833768 DOI: 10.1073/Pnas.88.20.8958 |
0.548 |
|
| 1991 |
Ozakil M, Wada A, Fujita N, Ishihama A. Growth phase-dependent modification of RNA polymerase in Escherichia coli Molecular Genetics and Genomics. 230: 17-23. PMID 1745227 DOI: 10.1007/Bf00290644 |
0.443 |
|
| 1991 |
Igarashi K, Ishihama A. Bipartite functional map of the E. coli RNA polymerase α subunit: Involvement of the C-terminal region in transcription activation by cAMP-CRP Cell. 65: 1015-1022. PMID 1646077 DOI: 10.1016/0092-8674(91)90553-B |
0.508 |
|
| 1991 |
Igarashi K, Fujita N, Ishihama A. Identification of a subunit assembly domain in the alpha subunit of Escherichia coli RNA polymerase Journal of Molecular Biology. 218: 1-6. DOI: 10.1016/0022-2836(91)90865-4 |
0.471 |
|
| 1990 |
Hankins RW, Nagata K, Kato A, Ishihama A. Mechanism of influenza virus transcription inhibition by matrix (M1) protein. Research in Virology. 141: 305-314. PMID 2392615 DOI: 10.1016/0923-2516(90)90002-Z |
0.397 |
|
| 1990 |
Honda A, Mukaigawa J, Yokoiyama A, Kato A, Ueda S, Nagata K, Krystal M, Nayak DP, Ishihama A. Purification and molecular structure of RNA polymerase from influenza virus A/PRS Journal of Biochemistry. 107: 624-628. PMID 2358436 DOI: 10.1093/Oxfordjournals.Jbchem.A123097 |
0.435 |
|
| 1990 |
Nagata K, Sakagami H, Harada H, Nonoyama M, Ishihama A, Konno K. Inhibition of influenza virus infection by pine cone antitumor substances Antiviral Research. 13: 11-21. PMID 2334167 DOI: 10.1016/0166-3542(90)90041-5 |
0.36 |
|
| 1990 |
Takahashi M, Toriyama S, Kikuchi Y, Hayakawa T, Ishihama A. Complementarity Between the 5′- and 3′-terminal Sequences of Rice Stripe Virus RNAs Journal of General Virology. 71: 2817-2821. PMID 2273384 DOI: 10.1099/0022-1317-71-12-2817 |
0.398 |
|
| 1990 |
Kobayashi M, Nagata K, Ishihama A. Promoter selectivity of Escherichia coli RNA polymerase: effect of base substitutions in the promoter -35 region on promoter strength. Nucleic Acids Research. 18: 7367-7372. PMID 2259628 DOI: 10.1093/Nar/18.24.7367 |
0.476 |
|
| 1990 |
Sakagami H, Nagata K, Ishihama A, Oh-hara T, Kawazoe Y. Anti-influenza virus activity of synthetically polymerized phenylpropenoids. Biochemical and Biophysical Research Communications. 172: 1267-1272. PMID 2244910 DOI: 10.1016/0006-291X(90)91586-H |
0.319 |
|
| 1990 |
Igarashi K, Fujita N, Ishihama A. Sequence analysis of two temperature-sensitive mutations in the alpha subunit gene (rpoA) of Escherichia coli RNA polymerase Nucleic Acids Research. 18: 5945-5948. PMID 2235479 DOI: 10.1093/Nar/18.20.5945 |
0.502 |
|
| 1990 |
Yamanaka K, Ogasawara N, Ueda M, Yoshikawa H, Ishihama A, Nagata K. Characterization of a temperature-sensitive mutant in the RNA polymerase PB2 subunit gene of influenza A/WSN/33 virus. Archives of Virology. 114: 65-73. PMID 2222191 DOI: 10.1007/Bf01311012 |
0.474 |
|
| 1990 |
Wada A, Yamazaki Y, Fujita N, Ishihama A. Structure and probable genetic location of a "ribosome modulation factor" associated with 100S ribosomes in stationary-phase Escherichia coli cells. Proceedings of the National Academy of Sciences of the United States of America. 87: 2657-2661. PMID 2181444 DOI: 10.1073/Pnas.87.7.2657 |
0.418 |
|
| 1990 |
Barbier P, Ishihama A. Variation in the nucleotide sequence of a prolamin gene family in wild rice. Plant Molecular Biology. 15: 191-195. PMID 2103437 DOI: 10.1007/Bf00017744 |
0.301 |
|
| 1990 |
Ishihama A. Molecular assembly and functional modulation of Escherichia coli RNA polymerase. Advances in Biophysics. 26: 19-31. PMID 2082727 DOI: 10.1016/0065-227X(90)90005-E |
0.529 |
|
| 1989 |
Nagata K, Takeuchi K, Ishihama A. In vitro synthesis of influenza viral RNA: biochemical complementation assay of factors required for influenza virus replication. Journal of Biochemistry. 106: 205-208. PMID 2808317 DOI: 10.1093/Oxfordjournals.Jbchem.A122833 |
0.422 |
|
| 1989 |
Igarashi K, Fujita N, Ishihama A. Promoter selectivity of Escherichia coli RNA polymerase: omega factor is responsible for the ppGpp sensitivity Nucleic Acids Research. 17: 8755-8765. PMID 2685748 DOI: 10.1093/Nar/17.21.8755 |
0.505 |
|
| 1989 |
Ueshima R, Fujita N, Ishihama A. DNA supercoiling and temperature shift affect the promoter activity of the Escherichia coli rpoH gene encoding the heat-shock sigma subunit of RNA polymerase Molecular Genetics and Genomics. 215: 185-189. PMID 2651877 DOI: 10.1007/Bf00339716 |
0.448 |
|
| 1989 |
Ihara T, Kato A, Ueda S, Ishihama A, Hirai K. Comparison of the sequence of the secretory glycoprotein A (gA) gene in Md5 and BC-1 strains of Marek's disease virus type 1. Virus Genes. 3: 127-140. PMID 2559540 DOI: 10.1007/Bf00125125 |
0.313 |
|
| 1989 |
Hankins RW, Nagata K, Bucher DJ, Popple S, Ishihama A. Monoclonal antibody analysis of influenza virus matrix protein epitopes involved in transcription inhibition Virus Genes. 3: 111-126. PMID 2482574 DOI: 10.1007/Bf00125124 |
0.343 |
|
| 1989 |
Nakayama M, Fujita N, Ohama T, Osawa S, Ishihama A. Micrococcus luteus, a bacterium with a high genomic G + C content, contains Escherichia coli-type promoters. Molecular Genetics and Genomics. 218: 384-389. PMID 2479819 DOI: 10.1007/Bf00332399 |
0.42 |
|
| 1989 |
Parvin JD, Palese P, Honda A, Ishihama A, Krystal M. Promoter analysis of influenza virus RNA polymerase. Journal of Virology. 63: 5142-5152. DOI: 10.1128/Jvi.63.12.5142-5152.1989 |
0.467 |
|
| 1988 |
Yamao F, Iwagami S, Azumi Y, Muto A, Osawa S, Fujita N, Ishihama A. Evolutionary dynamics of tryptophan tRNAs in Mycoplasma capricolum. Molecular Genetics and Genomics. 212: 364-369. PMID 3405203 DOI: 10.1007/Bf00334708 |
0.371 |
|
| 1988 |
Ishihama A, Nagata K. Viral RNA polymerases. Crc Critical Reviews in Biochemistry. 23: 27-76. PMID 3284713 DOI: 10.3109/10409238809103119 |
0.353 |
|
| 1988 |
Honda A, Ueda K, Nagata K, Ishihama A. RNA polymerase of influenza virus: role of NP in RNA chain elongation Journal of Biochemistry. 104: 1021-1026. PMID 3243763 DOI: 10.1093/Oxfordjournals.Jbchem.A122569 |
0.45 |
|
| 1988 |
Ishihama A. Promoter selectivity of prokaryotic RNA polymerases. Trends in Genetics. 4: 282-286. PMID 3076288 DOI: 10.1016/0168-9525(88)90170-9 |
0.502 |
|
| 1988 |
Makino K, Shinagawa H, Amemura M, Kimura S, Nakata A, Ishihama A. Regulation of the phosphate regulon of Escherichia coli: Activation of pstS transcription by PhoB protein in vitro Journal of Molecular Biology. 203: 85-95. PMID 3054125 DOI: 10.1016/0022-2836(88)90093-9 |
0.494 |
|
| 1988 |
Glass RE, Ralphs NT, Fujita N, Ishihama A. Assambley of amber fragment of the β subunit of Escherichia coli RNA polymerase Febs Journal. 176: 403-407. PMID 3046946 DOI: 10.1111/J.1432-1033.1988.Tb14296.X |
0.462 |
|
| 1988 |
Yamanaka K, Ishihama A, Nagata K. Translational regulation of influenza virus mRNAs. Virus Genes. 2: 19-30. PMID 2852414 DOI: 10.1007/Bf00569734 |
0.354 |
|
| 1988 |
Nomura T, Ishihama A. A novel function of RNase P from Escherichia coli: processing of a suppressor tRNA precursor. The Embo Journal. 7: 3539-3545. DOI: 10.1002/J.1460-2075.1988.Tb03230.X |
0.382 |
|
| 1987 |
Takeuchi K, Nagata K, Ishihama A. In vitro synthesis of influenza viral RNA: characterization of an isolated nuclear system that supports transcription of influenza viral RNA. Journal of Biochemistry. 101: 837-845. PMID 3611043 DOI: 10.1093/Oxfordjournals.Jbchem.A121950 |
0.473 |
|
| 1987 |
Honda A, Uéda K, Nagata K, Ishihama A. Identification of the RNA polymerase-binding site on genome RNA of influenza virus. Journal of Biochemistry. 102: 1241-1249. PMID 3436966 DOI: 10.1093/Oxfordjournals.Jbchem.A122163 |
0.47 |
|
| 1987 |
Ishihama A, Fujita N, Glass RE. Subunit assembly and metabolic stability of E. coli RNA polymerase Proteins. 2: 42-53. PMID 3328858 DOI: 10.1002/Prot.340020106 |
0.493 |
|
| 1987 |
Fujita N, Ishihama A, Nagasawa Y, Ueda S. RNA polymerase sigma-related proteins in Escherichia coli: detection by antibodies against a synthetic peptide. Molecular Genetics and Genomics. 210: 5-9. PMID 3323839 DOI: 10.1007/Bf00337751 |
0.464 |
|
| 1987 |
Fujita N, Ishihama A. Heat-shock induction of RNA polymerase sigma-32 synthesis in Escherichia coli: Transcriptional control and a multiple promoter system Mgg Molecular &Amp; General Genetics. 210: 10-15. PMID 3323832 DOI: 10.1007/Bf00337752 |
0.504 |
|
| 1987 |
Glass RE, Jones ST, Nomura T, Ishihama A. Hierarchy of the strength of Escherichia coli stringent control signals Mgg Molecular &Amp; General Genetics. 210: 1-4. PMID 3323831 DOI: 10.1007/Bf00337750 |
0.477 |
|
| 1987 |
Ishihama A, Honda A, Nagasawa-Fujimori H, Glass RE, Maekawa T, Imamoto F. Multivalent regulation of the nusA operon of Escherichia coli. Molecular Genetics and Genomics. 206: 185-191. PMID 3035333 DOI: 10.1007/Bf00333573 |
0.507 |
|
| 1987 |
Nomura T, Fujita N, Ishihama A. Expression of the leuX gene in Escherichia coli. Regulation at transcription and tRNA processing steps. Journal of Molecular Biology. 197: 659-670. PMID 2448476 DOI: 10.1016/0022-2836(87)90472-4 |
0.451 |
|
| 1986 |
Nomura T, Fujita N, Ishihama A. Promoter selectivity of Escherichia coli RNA polymerase: alteration by fMet-tRNAfMet Nucleic Acids Research. 14: 6857-6870. PMID 3532031 DOI: 10.1093/Nar/14.17.6857 |
0.519 |
|
| 1986 |
Ishihama A. Transcription signals and factors in Escherichia coli Advances in Biophysics. 21: 163-173. PMID 3529848 DOI: 10.1016/0065-227X(86)90021-3 |
0.54 |
|
| 1986 |
Glass RE, Honda A, Ishihama A. Genetic studies on the β subunit of Escherichia coli RNA polymerase: IX. The role of the carboxy-terminus in enzyme assembly Molecular Genetics and Genomics. 203: 492-495. PMID 3528752 DOI: 10.1007/Bf00422075 |
0.464 |
|
| 1986 |
Glass RE, Jones ST, Nene V, Nomura T, Fujita N, Ishihama A. Genetic studies on the beta subunit of Escherichia coli RNA polymerase. VIII. Localisation of a region involved in promoter selectivity. Molecular Genetics and Genomics. 203: 487-491. PMID 3528751 DOI: 10.1007/Bf00422074 |
0.496 |
|
| 1986 |
Glass RE, Jones ST, Ishihama A. Genetic studies on the β subunit of Escherichia coli RNA polymerase - VII. RNA polymerase is a target for ppGpp Mgg Molecular &Amp; General Genetics. 203: 265-268. PMID 3016480 DOI: 10.1007/Bf00333964 |
0.473 |
|
| 1986 |
Honda A, Mizumoto K, Ishihama A. RNA polymerase of influenza virus. Dinucleotide-primed initiation of transcription at specific positions on viral RNA. Journal of Biological Chemistry. 261: 5987-5991. DOI: 10.1016/s0021-9258(17)38482-x |
0.339 |
|
| 1986 |
Glass RE, Jones ST, Nene V, Nomura T, Fujita N, Ishihama A. Genetic studies on the β subunit of Escherichia coli RNA polymerase - VIII. Localisation of a region involved in promoter selectivity Mgg Molecular &Amp; General Genetics. 205: 383. DOI: 10.1007/BF00430456 |
0.331 |
|
| 1985 |
Kawakami K, Mizumoto K, Ishihama A, Shinozaki-Yamaguchi K, Miura K. Activation of influenza virus-associated RNA polymerase by cap-1 structure (m7GpppNm). Journal of Biochemistry. 97: 655-661. PMID 4008472 DOI: 10.1093/Oxfordjournals.Jbchem.A135101 |
0.464 |
|
| 1985 |
Izui K, Miwa T, Kajitani M, Fujita N, Sabe H, Ishihama A, Katsuki H. Promoter analysis of the phosphoenolpyruvate carboxylase gene of Escherichia coli. Nucleic Acids Research. 13: 59-71. PMID 3889833 DOI: 10.1093/Nar/13.1.59 |
0.429 |
|
| 1985 |
Kato A, Mizumoto K, Ishihama A. Purification and enzymatic properties of an RNA polymerase-RNA complex from influenza virus. Virus Research. 3: 115-127. PMID 3840635 DOI: 10.1016/0168-1702(85)90002-4 |
0.469 |
|
| 1985 |
Nomura T, Fujita N, Ishihama A. Promoter selectivity of E. coli RNA polymerase: analysis of the promoter system of convergently-transcribed dnaQ-rnh genes Nucleic Acids Research. 13: 7647-7661. PMID 2999701 DOI: 10.1093/Nar/13.21.7647 |
0.516 |
|
| 1985 |
Enami M, Fukuda R, Ishihama A. Transcription and replication of eight RNA segments of influenza virus. Virology. 142: 68-77. PMID 2997982 DOI: 10.1016/0042-6822(85)90423-4 |
0.321 |
|
| 1985 |
Tachibana H, Ishihama A. Correlation between the rate of productive transcription initiation and the strand-melting property of Escherichia coli promoters. Nucleic Acids Research. 13: 9031-9042. PMID 2417199 DOI: 10.1093/Nar/13.24.9031 |
0.409 |
|
| 1984 |
Pedersen S, Skouv J, Kajitani M, Ishihama A. Transcriptional organization of the rpsA operon of Escherichia coli. Molecular & General Genetics : Mgg. 196: 135-40. PMID 6384724 DOI: 10.1007/BF00334105 |
0.312 |
|
| 1984 |
Nomura T, Ishihama A, Kajitani M, Takahashi T, Nakada N, Yoshinaga K. Promoter selectivity of Escherichia coli RNA polymerase. II: Altered promoter selection by mutant holoenzymes. Molecular & General Genetics : Mgg. 193: 8-16. PMID 6361500 DOI: 10.1007/BF00327407 |
0.41 |
|
| 1984 |
Tatei K, Takemura K, Mayeda A, Fujiwara Y, Tanaka H, Ishihama A, Ohshima Y. U1 RNA-protein complex preferentially binds to both 5' and 3' splice junction sequences in RNA or single-stranded DNA. Proceedings of the National Academy of Sciences of the United States of America. 81: 6281-5. PMID 6208548 DOI: 10.1073/Pnas.81.20.6281 |
0.507 |
|
| 1984 |
Kajitani M, Ishihama A. Promoter selectivity of Escherichia coli RNA polymerase. Differential stringent control of the multiple promoters from ribosomal RNA and protein operons. Journal of Biological Chemistry. 259: 1951-1957. DOI: 10.1016/s0021-9258(17)43499-5 |
0.396 |
|
| 1983 |
Kawakami K, Ishihama A. RNA Polymerase of Influenza Virus. III. Isolation of RNA Polymerase-RNA Complexes from Influenza Virus PR8 Journal of Biochemistry. 93: 989-996. PMID 6863242 DOI: 10.1093/Oxfordjournals.Jbchem.A134254 |
0.445 |
|
| 1983 |
Kawakami K, Mizumoto K, Ishihama A. RNA polymerase of influenza virus. IV. Catalytic properties of the capped RNA endonuclease associated with the RNA polymerase Nucleic Acids Research. 11: 3637-3649. PMID 6856461 DOI: 10.1093/Nar/11.11.3637 |
0.466 |
|
| 1983 |
Kajitani M, Ishihama A. Determination of the promoter strength in the mixed transcription system, II. Promoters of ribosomal RNA, ribosomal protein S1 and recA protein operons from Escherichia coli Nucleic Acids Research. 11: 3873-3888. PMID 6346267 DOI: 10.1093/Nar/11.12.3873 |
0.491 |
|
| 1983 |
Aiba H, Kawamukai M, Ishihama A. Cloning and promoter analysis of the Escherichia coli adenylate cyclase gene Nucleic Acids Research. 11: 3451-3465. PMID 6344011 DOI: 10.1093/Nar/11.11.3451 |
0.463 |
|
| 1983 |
Kajitani M, Ishihama A. Determination of the promoter strength in the mixed transcription system: promoters of lactose, tryplophan and ribosomal protein L10 operons from Excherichia Coli Nucleic Acids Research. 11: 671-686. PMID 6300761 DOI: 10.1093/Nar/11.3.671 |
0.444 |
|
| 1982 |
Enami M, Ishihama A. Biosynthesis of RNA polymerase in Escherichia coli. XII. Noncoordinate synthesis of core enzyme subunits after suppression of cell growth. Molecular Genetics and Genomics. 185: 373-378. PMID 7048023 DOI: 10.1007/Bf00334127 |
0.403 |
|
| 1982 |
Fukui T, Ishihama A, Ohtsuka E, Ikehara M, Fukuda R. Reverse transcriptase associated with avian sarcoma-leukosis viruses. III. Influence of primer chain length on the initiation of DNA synthesis. Journal of Biochemistry. 91: 331-339. PMID 6175625 DOI: 10.1093/Oxfordjournals.Jbchem.A133692 |
0.308 |
|
| 1982 |
Ueno A, Ishihama A. Reverse transcriptase associated with avian sarcoma-leukosis viruses. II. Comparison of subunit structure and catalytic properties. Journal of Biochemistry. 91: 323-330. PMID 6175624 DOI: 10.1093/Oxfordjournals.Jbchem.A133691 |
0.38 |
|
| 1982 |
Ueno A, Ishihama A, Toyoshima K. Reverse Transcriptase Associated with Avian Sarcoma-Leukosis Viruses. I. Comparison of Intra-Virion Content of Multiple Enzyme Forms Journal of Biochemistry. 91: 311-322. PMID 6175623 DOI: 10.1093/Oxfordjournals.Jbchem.A133690 |
0.348 |
|
| 1981 |
Kawakami K, Ishihama A, Ohtsuka E, Tanaka T, Takashima H, Ikehara M. RNA polymerase of influenza virus. II. Influence of oligonucleotide chain length on the priming activity of RNA synthesis by virion-associated RNA polymerase. Journal of Biochemistry. 89: 1759-1768. PMID 7287650 DOI: 10.1093/Oxfordjournals.Jbchem.A133375 |
0.474 |
|
| 1981 |
Ishihama A, Fukuda R. Autogenous and post-transcriptional regulation of RNA polymerase synthesis. Molecular and Cellular Biochemistry. 31: 177-96. PMID 7003354 DOI: 10.1007/BF00225850 |
0.439 |
|
| 1981 |
Kawakami K, Ishihama A, Hamaguchi M. RNA polymerase of influenza virus. I. Comparison of the virion-associated RNA polymerase activity of various strains of influenza virus. Journal of Biochemistry. 89: 1751-1757. PMID 6270072 DOI: 10.1093/Oxfordjournals.Jbchem.A133374 |
0.426 |
|
| 1981 |
Kajitani M, Fukuda R, Ishihama A. Autogenous and post-transcriptional regulation of Escherichia coli RNA polymerase synthesis in vitro. Molecular & General Genetics : Mgg. 179: 489-96. PMID 6160369 DOI: 10.1007/BF00271738 |
0.42 |
|
| 1980 |
Kawakami K, Ishihama A. Defective assembly of ribonucleic acid polymerase subunits in a temperature-sensitive alpha-subunit mutant of Escherichia coli. Biochemistry. 19: 3491-3495. PMID 6996704 DOI: 10.1021/Bi00556A013 |
0.419 |
|
| 1980 |
Ishihama A, Enami M, Nishijima Y, Fukui T, Ohtsuka E, Ikehara M. 2′-Deoxy-2′-Azidoadenosine Triphosphate and 2′-Deoxy-2′-Fluoroadenosine Triphosphate as Substrates and Inhibitors for Escherichia coli DNA-dependent RNA Polymerase Journal of Biochemistry. 87: 825-830. PMID 6156150 DOI: 10.1093/Oxfordjournals.Jbchem.A132812 |
0.42 |
|
| 1980 |
Ishihama A, Shimamoto N, Aiba H, Kawakami K, Nashimoto H, Tsugawa A, Uchida H. Temperature-sensitive mutations in the alpha subunit gene of Escherichia coli RNA polymerase. Journal of Molecular Biology. 137: 137-50. PMID 6154799 DOI: 10.1016/0022-2836(80)90321-6 |
0.334 |
|
| 1979 |
Kawakami K, Saitoh T, Ishihama A. Biosynthesis of RNA polymerase in Escherichia coli. IX. Growth-dependent variations in the synthesis rate, content and distribution of RNA polymerase. Molecular Genetics and Genomics. 174: 107-116. PMID 386039 DOI: 10.1007/Bf00268348 |
0.447 |
|
| 1979 |
Ishihama A, Saitoh T. Subunits of RNA polymerase in function and structure. IX. Regulation of RNA polymerase activity by stringent starvation protein (SSP). Journal of Molecular Biology. 129: 517-30. PMID 383996 DOI: 10.1016/0022-2836(79)90466-2 |
0.387 |
|
| 1979 |
Saitoh T, Ishihama A. Subunits of RNA polymerase in function and structure. 8. Catalytic properties of self-reactivated core enzyme. Biochemistry. 18: 979-983. PMID 371671 DOI: 10.1021/Bi00573A007 |
0.439 |
|
| 1979 |
Ishihama A, Aiba H, Saitoh T, Takahashi S. Subunits of RNA polymerase in function and structure. 7. Structure of premature core enzyme. Biochemistry. 18: 972-978. PMID 371670 DOI: 10.1021/Bi00573A006 |
0.405 |
|
| 1979 |
Taketo M, Fukuda R, Ishihama A. Biosynthesis of RNA polymerase in Escherichia coli. VII. Regulation of betabeta' operon on lambda transducing phage in assembly-defective mutants. Molecular & General Genetics : Mgg. 165: 7-14. PMID 362166 DOI: 10.1007/BF00270370 |
0.361 |
|
| 1979 |
Ueno A, Kohno M, Ishihama A, Toyoshima K. Purification of Viral Proteins from Avian Sarcoma Virus QV2 Journal of Biochemistry. 86: 929-942. PMID 115857 DOI: 10.1093/Oxfordjournals.Jbchem.A132625 |
0.357 |
|
| 1979 |
Yura T, Ishihama A. Genetics Of Bacterial Rna Polymerases Annual Review of Genetics. 13: 59-97. PMID 94253 DOI: 10.1146/Annurev.Ge.13.120179.000423 |
0.4 |
|
| 1979 |
Kohno M, Ishihama A. Purification and properties of RNA-dependent DNA polymerase from cytoplasmic A-type particles of murine mammary tumor virus. European Journal of Biochemistry. 97: 257-66. PMID 89959 DOI: 10.1111/J.1432-1033.1979.TB13110.X |
0.309 |
|
| 1978 |
Saitoh T, Ishihama A. Biosynthesis of RNA polymerase in Escherichia coli VI. Distribution of RNA polymerase subunits between nucleoid and cytoplasm. Journal of Molecular Biology. 115: 403-16. PMID 338912 DOI: 10.1016/0022-2836(77)90162-0 |
0.367 |
|
| 1977 |
Fukuda R, Ishihama A, Saitoh T, Taketo M. Comparative studies of RNA polymerase subunits from various bacteria. Molecular & General Genetics : Mgg. 154: 135-44. PMID 408600 DOI: 10.1007/BF00330829 |
0.349 |
|
| 1977 |
Taketo M, Ishihama A. Biosynthesis of RNA polymerase in Escherichia coli. V. Defects of the subunit assembly in a temperature-sensitive beta subunit mutant. Journal of Molecular Biology. 112: 65-74. PMID 328895 DOI: 10.1016/S0022-2836(77)80156-3 |
0.305 |
|
| 1977 |
Ishihama A. Control of RNA Polymerase Formation Seibutsu Butsuri. 17: 277-279. DOI: 10.2142/Biophys.17.277 |
0.422 |
|
| 1976 |
Ito K, Iwakura Y, Ishihama A. Biosynthesis of RNA polymerase in Escherichia coli. III. Identification of intermediates in the assembly of RNA polymerase. Journal of Molecular Biology. 96: 257-71. PMID 1100844 DOI: 10.1016/0022-2836(75)90347-2 |
0.362 |
|
| 1976 |
Taketo M, Ishihama A. Peptide analysis of RNA polymerase alpha subunit from Escherichia coli: comparison of free with assembled form. Molecular & General Genetics : Mgg. 145: 311-6. PMID 781518 DOI: 10.1007/BF00325829 |
0.314 |
|
| 1976 |
Saitoh T, Ishihama A. Subunits of RNA polymerase in function and structure. VI. Sequence of the assembly in vitro of Escherichia coli RNA polymerase. Journal of Molecular Biology. 104: 621-35. PMID 781297 DOI: 10.1016/0022-2836(76)90125-X |
0.373 |
|
| 1976 |
Taketo M, Ishihama A. Biosynthesis of RNA polymerase in Escherichia coli. IV. Accumulation of intermediates in mutants defective in the subunit assembly. Journal of Molecular Biology. 102: 297-310. PMID 775104 DOI: 10.1016/S0022-2836(76)80055-1 |
0.354 |
|
| 1976 |
Ishihama A, Ikeuchi T, Matsumoto A, Yamamoto S. A novel adenosine triphosphatase isolated from RNA polymerase preparations of Escherichia coli. II. Enzymatic properties and molecular structure. Journal of Biochemistry. 79: 927-936. PMID 134030 DOI: 10.1093/Oxfordjournals.Jbchem.A131160 |
0.425 |
|
| 1976 |
Ishihama A, Ikeuchi T, Yura T. A novel adenosine triphosphatase isolated from RNA polymerase preparations of Escherichia coli. I. Copurification and separation. Journal of Biochemistry. 79: 917-925. PMID 134029 DOI: 10.1093/Oxfordjournals.Jbchem.A131159 |
0.429 |
|
| 1975 |
Fukuda R, Ishihama A. Subunits of RNA polymerase in function and structure; Maturation in vitro of core enzyme from Escherichia coli. Journal of Molecular Biology. 87: 523-40. PMID 4613838 DOI: 10.1016/0022-2836(74)90102-8 |
0.341 |
|
| 1975 |
Iwakura Y, Ito K, Ishihama A. Biosynthesis of RNA polymerase in Escherichia coli. I. Control of RNA polymerase content at various growth rates. Molecular & General Genetics : Mgg. 133: 1-23. PMID 4214991 DOI: 10.1007/BF00268673 |
0.34 |
|
| 1975 |
Naito S, Ishihama A. Isolation and properties of the transcription complex of Escherichia coli RNA polymerase Bba Section Nucleic Acids and Protein Synthesis. 402: 88-104. PMID 1098697 DOI: 10.1016/0005-2787(75)90373-1 |
0.424 |
|
| 1975 |
Iwakura Y, Ishihama A. Biosynthesis of RNA polymerase in Escherichia coli Molecular and General Genetics Mgg. 142: 67-84. DOI: 10.1007/BF00268756 |
0.369 |
|
| 1973 |
Ishihama A, Fukuda R, Ito K. Subunits of RNA polymerase in function and structure. IV. Enhancing role of sigma in the subunit assembly of Escherichia coli RNA polymerase. Journal of Molecular Biology. 79: 127-36. PMID 4583369 DOI: 10.1016/0022-2836(73)90274-X |
0.381 |
|
| 1973 |
Ishihama A, Ito K. Subunits of RNA polymerase in function and structure. II. Reconstitution of Escherichia coli RNA polymerase from isolated subunits. Journal of Molecular Biology. 72: 111-23. PMID 4567397 DOI: 10.1016/0022-2836(72)90073-3 |
0.37 |
|
| 1972 |
Ishihama A. Subunits of ribonucleic acid polymerase in function and structure. I. Reversible dissociations of Escherichia coli ribonucleic acid polymerase. Biochemistry. 11: 1250-1258. PMID 4552051 DOI: 10.1021/Bi00757A021 |
0.346 |
|
| 1971 |
Ishihama A, Murakami S, Fukuda R, Matsukage A, Kameyama T. The nature of initiation sites on DNA for the core RNA polymerase. Molecular & General Genetics : Mgg. 111: 66-76. PMID 5087425 DOI: 10.1007/BF00286555 |
0.324 |
|
| 1971 |
Ishihama A, Yura T. The RNA polymerase of Escherichia coli Seibutsu Butsuri. 11: 211-225. DOI: 10.2142/Biophys.11.211 |
0.468 |
|
| 1970 |
Ishihama A. Subunits of E. coli RNA polymerase in function and structure. Journal of Cellular Physiology. 74: Suppl 1:223-4. PMID 4902820 DOI: 10.1002/JCP.1040740423 |
0.344 |
|
| 1968 |
Ishihama A. RNA polymerase of HeLa cells. Biochimica Et Biophysica Acta. 145: 272-83. PMID 6070748 DOI: 10.1016/0005-2787(67)90045-7 |
0.317 |
|
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