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Lisa C. Tucker-Kellogg, PhD - Publications

Affiliations: 
2014-2023 Duke-NUS Graduate Medical School, Singapore, Singapore, Singapore 
Area:
Computational Modeling, Molecular Bioolgy, Cancer, Wound Healing
Website:
https://www.duke-nus.edu.sg/cscb/the-team/primary-faculty/details/Detail/lisa-tucker-kellogg
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56 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Sin WX, Jagannathan NS, Teo DBL, Kairi F, Fong SY, Tan JHL, Sandikin D, Cheung KW, Luah YH, Wu X, Raymond JJ, Lim FLWI, Lee YH, Seng MS, Soh SY, ... ... Tucker-Kellogg L, et al. A high-density microfluidic bioreactor for the automated manufacturing of CAR T cells. Nature Biomedical Engineering. PMID 38834752 DOI: 10.1038/s41551-024-01219-1  0.255
2024 Cheng RK, Jagannathan NS, Kathrada AI, Jesuthasan S, Tucker-Kellogg L. Computational modeling of light processing in the habenula and dorsal raphe based on laser ablation of functionally-defined cells. Bmc Neuroscience. 25: 22. PMID 38627616 DOI: 10.1186/s12868-024-00866-z  0.236
2023 Aloweni FBAB, Lim SH, Agus NLB, Ang SY, Goh MM, Yong P, Fook-Chong S, Tucker-Kellogg L, Soh CR. Evaluation of an Evidence-Based Care Bundle for Preventing Hospital-Acquired Pressure Injuries in High-Risk Surgical Patients. Aorn Journal. 118: 306-320. PMID 37882600 DOI: 10.1002/aorn.14021  0.203
2023 Nasir NJM, Heemskerk H, Jenkins J, Hamadee NH, Bunte R, Tucker-Kellogg L. Myoglobin-derived iron causes wound enlargement and impaired regeneration in pressure injuries of muscle. Elife. 12. PMID 37267120 DOI: 10.7554/eLife.85633  0.219
2022 Ng JWK, Ong EHQ, Tucker-Kellogg L, Tucker-Kellogg G. Deep learning for de-convolution of Smad2 versus Smad3 binding sites. Bmc Genomics. 23: 525. PMID 35858839 DOI: 10.1186/s12864-022-08565-x  0.309
2022 Nasir NJM, Corrias A, Heemskerk H, Ang ET, Jenkins JH, Sebastin SJ, Tucker-Kellogg L. The panniculus carnosus muscle: a missing link in the chronicity of heel pressure ulcers? Journal of the Royal Society, Interface. 19: 20210631. PMID 35193390 DOI: 10.1098/rsif.2021.0631  0.232
2022 Lim LJ, Lim AJW, Ooi BNS, Tan JWL, Koh ET, Chong SS, Khor CC, Tucker-Kellogg L, Lee CG, Leong KP. Machine Learning using Genetic and Clinical Data Identifies a Signature that Robustly Predicts Methotrexate Response in Rheumatoid Arthritis. Rheumatology (Oxford, England). PMID 35094058 DOI: 10.1093/rheumatology/keac032  0.226
2022 Lim AJW, Lim LJ, Ooi BNS, Koh ET, Tan JWL, Chong SS, Khor CC, Tucker-Kellogg L, Leong KP, Lee CG. Functional coding haplotypes and machine-learning feature elimination identifies predictors of Methotrexate Response in Rheumatoid Arthritis patients. Ebiomedicine. 75: 103800. PMID 35022146 DOI: 10.1016/j.ebiom.2021.103800  0.214
2021 Surendran A, Forbes Dewey C, Low BC, Tucker-Kellogg L. A computational model of mutual antagonism in the mechano-signaling network of RhoA and nitric oxide. Bmc Molecular and Cell Biology. 22: 47. PMID 34635055 DOI: 10.1186/s12860-021-00383-5  0.266
2021 Rouers A, Chng MHY, Lee B, Rajapakse MP, Kaur K, Toh YX, Sathiakumar D, Loy T, Thein TL, Lim VWX, Singhal A, Yeo TW, Leo YS, Vora KA, Casimiro D, ... ... Tucker-Kellogg L, et al. Immune cell phenotypes associated with disease severity and long-term neutralizing antibody titers after natural dengue virus infection. Cell Reports. Medicine. 2: 100278. PMID 34095880 DOI: 10.1016/j.xcrm.2021.100278  0.256
2021 Jagannathan NS, Hogue CWV, Tucker-Kellogg L. Computational modeling suggests binding-induced expansion of Epsin disordered regions upon association with AP2. Plos Computational Biology. 17: e1008474. PMID 33406091 DOI: 10.1371/journal.pcbi.1008474  0.283
2020 Gupta K, Ng IC, Balachander GM, Nguyen BP, Tucker-Kellogg L, Low BC, Yu H. Bile canaliculi contract autonomously by releasing calcium into hepatocytes via mechanosensitive calcium channel. Biomaterials. 259: 120283. PMID 32827796 DOI: 10.1016/J.Biomaterials.2020.120283  0.521
2020 Zhang S, Reljić B, Liang C, Kerouanton B, Francisco JC, Peh JH, Mary C, Jagannathan NS, Olexiouk V, Tang C, Fidelito G, Nama S, Cheng RK, Wee CL, Wang LC, ... ... Tucker-Kellogg L, et al. Mitochondrial peptide BRAWNIN is essential for vertebrate respiratory complex III assembly. Nature Communications. 11: 1312. PMID 32161263 DOI: 10.1038/S41467-020-14999-2  0.359
2020 Jagannathan NS, Ihsan MO, Kin XX, Welsch RE, Clément M, Tucker-Kellogg L. Transcompp: Understanding phenotypic plasticity by estimating Markov transition rates for cell state transitions. Bioinformatics. 36: 2813-2820. PMID 31971581 DOI: 10.1093/Bioinformatics/Btaa021  0.377
2020 Jagannathan NS, Hogue CWV, Tucker-Kellogg L. De novo ensemble modeling suggests that AP2-binding to disordered regions can increase steric volume of Epsin but not Eps15. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 25: 183-194. PMID 31797596  0.27
2019 Hirpara JL, Subramaniam K, Bellot G, Qu J, Seah S, Loh T, Tucker-Kellogg L, Clement MV, Pervaiz S. Superoxide induced inhibition of death receptor signaling is mediated via induced expression of apoptosis inhibitory protein cFLIP. Redox Biology. 30: 101403. PMID 31954371 DOI: 10.1016/J.Redox.2019.101403  0.39
2019 Li C, Chng KR, Kwah JS, Av-Shalom TV, Tucker-Kellogg L, Nagarajan N. An expectation-maximization algorithm enables accurate ecological modeling using longitudinal microbiome sequencing data. Microbiome. 7: 118. PMID 31439018 DOI: 10.1186/S40168-019-0729-Z  0.354
2018 Aloweni F, Ang SY, Fook-Chong S, Agus N, Yong P, Goh MM, Tucker-Kellogg L, Soh RC. A prediction tool for hospital-acquired pressure ulcers among surgical patients: Surgical pressure ulcer risk score. International Wound Journal. PMID 30289624 DOI: 10.1111/iwj.13007  0.218
2018 Saputra EC, Huang L, Chen Y, Tucker-Kellogg L. Combination Therapy and the Evolution of Resistance: The Theoretical Merits of Synergism and Antagonism in Cancer. Cancer Research. PMID 29686021 DOI: 10.1158/0008-5472.Can-17-1201  0.359
2018 Saputra EC, Huang L, Tucker-Kellogg L. Abstract 1185: Synergistic drug combinations promote expansion of partially-resistant subpopulations in computational modeling of cancer heterogeneity and graded plasticity Cancer Research. 78: 1185-1185. DOI: 10.1158/1538-7445.Am2018-1185  0.362
2017 Li H, Venkatraman L, Narmada BC, White JK, Yu H, Tucker-Kellogg L. Computational analysis reveals the coupling between bistability and the sign of a feedback loop in a TGF-β1 activation model. Bmc Systems Biology. 11: 136. PMID 29322934 DOI: 10.1186/S12918-017-0508-Z  0.586
2017 Pontes B, Monzo P, Gole L, Le Roux AL, Kosmalska AJ, Tam ZY, Luo W, Kan S, Viasnoff V, Roca-Cusachs P, Tucker-Kellogg L, Gauthier NC. Membrane tension controls adhesion positioning at the leading edge of cells. The Journal of Cell Biology. PMID 28687667 DOI: 10.1083/Jcb.201611117  0.35
2017 Yan J, Yu Y, Kang JW, Tam ZY, Xu S, Fong ELS, Singh SP, Song Z, Tucker-Kellogg L, So PTC, Yu H. Development of a classification model for non-alcoholic steatohepatitis (NASH) using confocal Raman micro-spectroscopy. Journal of Biophotonics. PMID 28635128 DOI: 10.1002/Jbio.201600303  0.541
2017 Chua HE, Bhowmick SS, Tucker-Kellogg L. Synergistic Target Combination Prediction From Curated Signaling Networks: Machine Learning Meets Systems Biology and Pharmacology. Methods (San Diego, Calif.). PMID 28552265 DOI: 10.1016/J.Ymeth.2017.05.015  0.368
2017 Alok A, Lei Z, Jagannathan NS, Kaur S, Rozen SG, Tucker-Kellogg L, Virshup DM. Wnts synergize to activate β-catenin signaling. Journal of Cell Science. PMID 28289266 DOI: 10.1242/Jcs.198093  0.407
2017 Alok A, Lei Z, Jagannathan NS, Kaur S, Harmston N, Rozen SG, Tucker-Kellogg L, Virshup DM. Wnt proteins synergize to activate β-catenin signaling Development. 144: e1.1-e1.1. DOI: 10.1242/Dev.154112  0.398
2016 Nguyen BP, Heemskerk H, So PT, Tucker-Kellogg L. Superpixel-based segmentation of muscle fibers in multi-channel microscopy. Bmc Systems Biology. 10: 124. PMID 28105947 DOI: 10.1186/S12918-016-0372-2  0.327
2016 Jagannathan NS, Tucker-Kellogg L. Membrane permeability during pressure ulcer formation: A computational model of dynamic competition between cytoskeletal damage and repair. Journal of Biomechanics. 49: 1311-1320. PMID 26772800 DOI: 10.1016/J.Jbiomech.2015.12.022  0.366
2015 Nim TH, Luo L, White JK, Clément MV, Tucker-Kellogg L. Non-canonical Activation of Akt in Serum-Stimulated Fibroblasts, Revealed by Comparative Modeling of Pathway Dynamics. Plos Computational Biology. 11: e1004505. PMID 26554359 DOI: 10.1371/Journal.Pcbi.1004505  0.422
2015 Ngeow J, Yu W, Yehia L, Niazi F, Chen J, Tang X, Heald B, Lei J, Romigh T, Tucker-Kellogg L, Lim KH, Song H, Eng C. Exome Sequencing Reveals Germline SMAD9 Mutation that Reduces PTEN Expression and is Associated with Hamartomatous Polyposis and Gastrointestinal Ganglioneuromas. Gastroenterology. PMID 26122142 DOI: 10.1053/J.Gastro.2015.06.027  0.33
2015 Chua HE, Bhowmick SS, Tucker-Kellogg L, Dewey CF. TENET: topological feature-based target characterization in signalling networks. Bioinformatics (Oxford, England). 31: 3306-14. PMID 26079348 DOI: 10.1093/Bioinformatics/Btv360  0.352
2014 Wang J, Tucker-Kellogg L, Ng IC, Jia R, Thiagarajan PS, White JK, Yu H. The self-limiting dynamics of TGF-β signaling in silico and in vitro, with negative feedback through PPM1A upregulation. Plos Computational Biology. 10: e1003573. PMID 24901250 DOI: 10.1371/Journal.Pcbi.1003573  0.589
2014 Bahl N, Winarsih I, Tucker-Kellogg L, Ding JL. Extracellular haemoglobin upregulates and binds to tissue factor on macrophages: implications for coagulation and oxidative stress. Thrombosis and Haemostasis. 111: 67-78. PMID 24108579 DOI: 10.1160/Th13-03-0220  0.38
2013 Venkatraman L, Tucker-Kellogg L. The CD47-binding peptide of thrombospondin-1 induces defenestration of liver sinusoidal endothelial cells. Liver International. 33: 1386-1397. PMID 23799952 DOI: 10.1111/Liv.12231  0.392
2013 Nim TH, White JK, Tucker-Kellogg L. SPEDRE: a web server for estimating rate parameters for cell signaling dynamics in data-rich environments. Nucleic Acids Research. 41: W187-91. PMID 23742908 DOI: 10.1093/Nar/Gkt459  0.364
2013 Suet Ting Tan R, Lin B, Liu Q, Tucker-Kellogg L, Ho B, Leung BP, Ling Ding J. The synergy in cytokine production through MyD88-TRIF pathways is co-ordinated with ERK phosphorylation in macrophages. Immunology and Cell Biology. 91: 377-87. PMID 23567895 DOI: 10.1038/Icb.2013.13  0.332
2013 Narmada BC, Kang Y, Venkatraman L, Peng Q, Sakban RB, Nugraha B, Jiang X, Bunte RM, So PT, Tucker-Kellogg L, Mao HQ, Yu H. Hepatic stellate cell-targeted delivery of hepatocyte growth factor transgene via bile duct infusion enhances its expression at fibrotic foci to regress dimethylnitrosamine-induced liver fibrosis. Human Gene Therapy. 24: 508-19. PMID 23527815 DOI: 10.1089/Hum.2012.158  0.563
2013 Nim TH, Luo L, Clément MV, White JK, Tucker-Kellogg L. Systematic parameter estimation in data-rich environments for cell signalling dynamics. Bioinformatics (Oxford, England). 29: 1044-51. PMID 23426255 DOI: 10.1093/Bioinformatics/Btt083  0.393
2013 Subramaniam K, Hirpara JL, Tucker-Kellogg L, Tucker-Kellogg G, Pervaiz S. FLIP: a flop for execution signals. Cancer Letters. 332: 151-5. PMID 22781394 DOI: 10.1016/J.Canlet.2012.07.005  0.405
2013 Narmada BC, Chia SM, Tucker-Kellogg L, Yu H. HGF regulates the activation of TGF-β1 in rat hepatocytes and hepatic stellate cells. Journal of Cellular Physiology. 228: 393-401. PMID 22718393 DOI: 10.1002/Jcp.24143  0.595
2012 Shi Y, Mellier G, Huang S, White J, Pervaiz S, Tucker-Kellogg L. Computational modelling of LY303511 and TRAIL-induced apoptosis suggests dynamic regulation of cFLIP. Bioinformatics (Oxford, England). 29: 347-54. PMID 23239672 DOI: 10.1093/Bioinformatics/Bts702  0.401
2012 Venkatraman L, Chia SM, Narmada BC, White JK, Bhowmick SS, Forbes Dewey C, So PT, Tucker-Kellogg L, Yu H. Plasmin triggers a switch-like decrease in thrombospondin-dependent activation of TGF-β1. Biophysical Journal. 103: 1060-8. PMID 23009856 DOI: 10.1016/J.Bpj.2012.06.050  0.598
2012 Tucker-Kellogg L, Shi Y, White JK, Pervaiz S. Reactive oxygen species (ROS) and sensitization to TRAIL-induced apoptosis, in Bayesian network modelling of HeLa cell response to LY303511. Biochemical Pharmacology. 84: 1307-17. PMID 22982511 DOI: 10.1016/J.Bcp.2012.08.028  0.37
2012 Venkatraman L, Chia S, Narmada B, Siang Poh L, White JK, Saha Bhowmick S, Dewey CF, So PT, Yu H, Tucker-Kellogg L. Plasmin Antagonizes Positive Feedback Between TGF-β1 and TSP1 : Steady States and Dynamics Biophysical Journal. 102: 730a-731a. DOI: 10.1016/J.Bpj.2011.11.3964  0.582
2011 Zheng B, Tan L, Mo X, Yu W, Wang Y, Tucker-Kellogg L, Welsch RE, So PT, Yu H. Predicting in vivo anti-hepatofibrotic drug efficacy based on in vitro high-content analysis. Plos One. 6: e26230. PMID 22073152 DOI: 10.1371/Journal.Pone.0026230  0.55
2011 Venkatraman L, Li H, Dewey CF, White JK, Bhowmick SS, Yu H, Tucker-Kellogg L. Steady states and dynamics of urokinase-mediated plasmin activation in silico and in vitro. Biophysical Journal. 101: 1825-34. PMID 22004735 DOI: 10.1016/J.Bpj.2011.08.054  0.593
2011 Bahl N, Du R, Winarsih I, Ho B, Tucker-Kellogg L, Tidor B, Ding JL. Delineation of lipopolysaccharide (LPS)-binding sites on hemoglobin: From in silico predictions to biophysical characterization Journal of Biological Chemistry. 286: 37793-37803. PMID 21900232 DOI: 10.1074/Jbc.M111.245472  0.552
2011 Huang L, Pan CQ, Li B, Tucker-Kellogg L, Tidor B, Chen Y, Low BC. Simulating EGFR-ERK signaling control by scaffold proteins KSR and MP1 reveals differential Ligand-Sensitivity Co-Regulated by CBL-CIN85 and Endophilin Plos One. 6. PMID 21829671 DOI: 10.1371/Journal.Pone.0022933  0.59
2011 Shi Y, Tucker-Kellogg L, White J, Pervaiz S. Abstract 4913: Systematic analysis of LY30-induced sensitization of cancer cells to TRAIL Cancer Research. 71: 4913-4913. DOI: 10.1158/1538-7445.Am2011-4913  0.409
2010 Zhang W, Tucker-Kellogg L, Narmada BC, Venkatraman L, Chang S, Lu Y, Tan N, White JK, Jia R, Bhowmick SS, Shen S, Dewey CF, Yu H. Cell-delivery therapeutics for liver regeneration. Advanced Drug Delivery Reviews. 62: 814-26. PMID 20193722 DOI: 10.1016/J.Addr.2010.02.005  0.548
2010 Venkatraman L, Yu H, Bhowmick SS, Dewey F, Tucker-Kellogg L. The steady states and dynamics of urokinase-mediated plasmin activation. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 190-200. PMID 19908371  0.55
2008 Nigham A, Tucker-Kellogg L, Mihalek I, Verma C, Hsu D. pFlexAna: detecting conformational changes in remotely related proteins. Nucleic Acids Research. 36: W246-51. PMID 18477634 DOI: 10.1093/Nar/Gkn259  0.35
2003 Rienstra C, Griffin R, Lozano-Perez T, Tidor B, McMahon M, Reif B, Hohwy M, Tucker-Kellogg L, Jaroniec C. 13C and 15N Chemical Shift Assignments for f-MLF-OH Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr5934  0.518
2002 Rienstra CM, Tucker-Kellogg L, Jaroniec CP, Hohwy M, Reif B, McMahon MT, Tidor B, Lozano-Pérez T, Griffin RG. De novo determination of peptide structure with solid-state magic-angle spinning NMR spectroscopy. Proceedings of the National Academy of Sciences of the United States of America. 99: 10260-5. PMID 12149447 DOI: 10.1073/Pnas.152346599  0.701
1997 Tucker-Kellogg L, Rould MA, Chambers KA, Ades SE, Sauer RT, Pabo CO. Engrailed (Gln50-->Lys) homeodomain-DNA complex at 1.9 A resolution: structural basis for enhanced affinity and altered specificity. Structure (London, England : 1993). 5: 1047-54. PMID 9309220 DOI: 10.1016/S0969-2126(97)00256-6  0.61
1994 Berger B, Shor PW, Tucker-Kellogg L, King J. Local rule-based theory of virus shell assembly Proceedings of the National Academy of Sciences of the United States of America. 91: 7732-7736. PMID 8052652 DOI: 10.1073/Pnas.91.16.7732  0.605
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