James W. Thomas - Publications

Affiliations: 
Emory University Emory University, Atlanta, GA 

45 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2015 Zinzow-Kramer WM, Horton BM, McKee CD, Michaud JM, Tharp GK, Thomas JW, Tuttle EM, Yi S, Maney DL. Genes located in a chromosomal inversion are correlated with territorial song in white-throated sparrows. Genes, Brain, and Behavior. PMID 26463687 DOI: 10.1111/gbb.12252  0.76
2015 Francica JR, Sheng Z, Zhang Z, Nishimura Y, Shingai M, Ramesh A, Keele BF, Schmidt SD, Flynn BJ, Darko S, Lynch RM, Yamamoto T, Matus-Nicodemos R, Wolinsky D, et al. Analysis of immunoglobulin transcripts and hypermutation following SHIV(AD8) infection and protein-plus-adjuvant immunization. Nature Communications. 6: 6565. PMID 25858157 DOI: 10.1038/ncomms7565  0.76
2014 Horton BM, Hudson WH, Ortlund EA, Shirk S, Thomas JW, Young ER, Zinzow-Kramer WM, Maney DL. Estrogen receptor α polymorphism in a species with alternative behavioral phenotypes. Proceedings of the National Academy of Sciences of the United States of America. 111: 1443-8. PMID 24474771 DOI: 10.1073/pnas.1317165111  0.76
2013 Horton BM, Hu Y, Martin CL, Bunke BP, Matthews BS, Moore IT, Thomas JW, Maney DL. Behavioral characterization of a white-throated sparrow homozygous for the ZAL2(m) chromosomal rearrangement. Behavior Genetics. 43: 60-70. PMID 23264208 DOI: 10.1007/s10519-012-9574-6  0.76
2012 McGraw LA, Davis JK, Thomas PJ, Young LJ, Thomas JW. BAC-based sequencing of behaviorally-relevant genes in the prairie vole. Plos One. 7: e29345. PMID 22238603 DOI: 10.1371/journal.pone.0029345  0.76
2011 Keebaugh AC, Mitchell HA, Gaval-Cruz M, Freeman KG, Edwards GL, Weinshenker D, Thomas JW. PRTFDC1 is a genetic modifier of HPRT-deficiency in the mouse. Plos One. 6: e22381. PMID 21818316 DOI: 10.1371/journal.pone.0022381  0.76
2011 McGraw LA, Davis JK, Young LJ, Thomas JW. A genetic linkage map and comparative mapping of the prairie vole (Microtus ochrogaster) genome. Bmc Genetics. 12: 60. PMID 21736755 DOI: 10.1186/1471-2156-12-60  0.76
2011 Davis JK, Mittel LB, Lowman JJ, Thomas PJ, Maney DL, Martin CL, Thomas JW. Haplotype-based genomic sequencing of a chromosomal polymorphism in the white-throated sparrow (Zonotrichia albicollis). The Journal of Heredity. 102: 380-90. PMID 21613376 DOI: 10.1093/jhered/esr043  0.76
2011 Huynh LY, Maney DL, Thomas JW. Chromosome-wide linkage disequilibrium caused by an inversion polymorphism in the white-throated sparrow (Zonotrichia albicollis). Heredity. 106: 537-46. PMID 20571514 DOI: 10.1038/hdy.2010.85  0.76
2010 Huynh LY, Maney DL, Thomas JW. Contrasting population genetic patterns within the white-throated sparrow genome (Zonotrichia albicollis). Bmc Genetics. 11: 96. PMID 21029465 DOI: 10.1186/1471-2156-11-96  0.76
2010 Davis JK, Lowman JJ, Thomas PJ, ten Hallers BF, Koriabine M, Huynh LY, Maney DL, de Jong PJ, Martin CL, Thomas JW. Evolution of a bitter taste receptor gene cluster in a New World sparrow. Genome Biology and Evolution. 2: 358-70. PMID 20624740 DOI: 10.1093/gbe/evq027  0.76
2010 Davis JK, Thomas PJ, Thomas JW. A W-linked palindrome and gene conversion in New World sparrows and blackbirds. Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. 18: 543-53. PMID 20535633 DOI: 10.1007/s10577-010-9134-y  0.76
2010 McGraw LA, Davis JK, Lowman JJ, ten Hallers BF, Koriabine M, Young LJ, de Jong PJ, Rudd MK, Thomas JW. Development of genomic resources for the prairie vole (Microtus ochrogaster): construction of a BAC library and vole-mouse comparative cytogenetic map. Bmc Genomics. 11: 70. PMID 20109198 DOI: 10.1186/1471-2164-11-70  0.76
2010 Keebaugh AC, Thomas JW. The evolutionary fate of the genes encoding the purine catabolic enzymes in hominoids, birds, and reptiles. Molecular Biology and Evolution. 27: 1359-69. PMID 20106906 DOI: 10.1093/molbev/msq022  0.76
2009 Keebaugh AC, Thomas JW. The genomes of the South American opossum (Monodelphis domestica) and platypus (Ornithorhynchus anatinus) encode a more complete purine catabolic pathway than placental mammals. Comparative Biochemistry and Physiology. Part D, Genomics & Proteomics. 4: 174-8. PMID 20161190 DOI: 10.1016/j.cbd.2009.02.003  0.76
2009 Carney AE, Sanders RD, Garza KR, McGaha LA, Bean LJ, Coffee BW, Thomas JW, Cutler DJ, Kurtkaya NL, Fridovich-Keil JL. Origins, distribution and expression of the Duarte-2 (D2) allele of galactose-1-phosphate uridylyltransferase. Human Molecular Genetics. 18: 1624-32. PMID 19224951 DOI: 10.1093/hmg/ddp080  0.76
2008 Yang SH, Cheng PH, Sullivan RT, Thomas JW, Chan AW. Lentiviral integration preferences in transgenic mice. Genesis (New York, N.Y. : 2000). 46: 711-8. PMID 18821598 DOI: 10.1002/dvg.20435  0.76
2008 Thomas JW. Comparative physical mapping: Universal overgo hybridization probe design and BAC library hybridization. Methods in Molecular Biology (Clifton, N.J.). 422: 119-32. PMID 18629664 DOI: 10.1007/978-1-59745-581-7_8  0.76
2008 Thomas JW, Cáceres M, Lowman JJ, Morehouse CB, Short ME, Baldwin EL, Maney DL, Martin CL. The chromosomal polymorphism linked to variation in social behavior in the white-throated sparrow (Zonotrichia albicollis) is a complex rearrangement and suppressor of recombination. Genetics. 179: 1455-68. PMID 18562641 DOI: 10.1534/genetics.108.088229  0.76
2008 Sullivan RT, Morehouse CB, Thomas JW. Uprobe 2008: an online resource for universal overgo hybridization-based probe retrieval and design. Nucleic Acids Research. 36: W149-53. PMID 18515352 DOI: 10.1093/nar/gkn293  0.76
2007 Cáceres M, Sullivan RT, Thomas JW. A recurrent inversion on the eutherian X chromosome. Proceedings of the National Academy of Sciences of the United States of America. 104: 18571-6. PMID 18003915 DOI: 10.1073/pnas.0706604104  0.76
2007 Cáceres M, Suwyn C, Maddox M, Thomas JW, Preuss TM. Increased cortical expression of two synaptogenic thrombospondins in human brain evolution. Cerebral Cortex (New York, N.Y. : 1991). 17: 2312-21. PMID 17182969 DOI: 10.1093/cercor/bhl140  0.76
2007 Keebaugh AC, Sullivan RT, Thomas JW. Gene duplication and inactivation in the HPRT gene family. Genomics. 89: 134-42. PMID 16928426 DOI: 10.1016/j.ygeno.2006.07.003  0.76
2007 Michopoulos V, Maney DL, Morehouse CB, Thomas JW. A genotyping assay to determine plumage morph in the white-throated Sparrow (Zonotrichia albicollis) Auk. 124: 1330-1335. DOI: 10.1642/0004-8038(2007)124[1330:AGATDP]2.0.CO;2  0.76
2006 Elango N, Thomas JW, Yi SV. Variable molecular clocks in hominoids. Proceedings of the National Academy of Sciences of the United States of America. 103: 1370-5. PMID 16432233 DOI: 10.1073/pnas.0510716103  0.76
2006 Cáceres M, Thomas JW. The gene of retroviral origin Syncytin 1 is specific to hominoids and is inactive in Old World monkeys. The Journal of Heredity. 97: 100-6. PMID 16424151 DOI: 10.1093/jhered/esj011  0.76
2005 Kellner WA, Sullivan RT, Carlson BH, Thomas JW. Uprobe: a genome-wide universal probe resource for comparative physical mapping in vertebrates. Genome Research. 15: 166-73. PMID 15590945 DOI: 10.1101/gr.3066805  0.76
2004 Marquès-Bonet T, Cáceres M, Bertranpetit J, Preuss TM, Thomas JW, Navarro A. Chromosomal rearrangements and the genomic distribution of gene-expression divergence in humans and chimpanzees. Trends in Genetics : Tig. 20: 524-9. PMID 15475109 DOI: 10.1016/j.tig.2004.08.009  0.76
2003 Thomas JW, Green ED. Comparative sequence analysis of a single-gene conserved segment in mouse and human. Mammalian Genome : Official Journal of the International Mammalian Genome Society. 14: 673-8. PMID 14694903 DOI: 10.1007/s00335-003-2300-1  0.76
2003 Thomas JW, Touchman JW, Blakesley RW, Bouffard GG, Beckstrom-Sternberg SM, Margulies EH, Blanchette M, Siepel AC, Thomas PJ, McDowell JC, Maskeri B, Hansen NF, Schwartz MS, Weber RJ, Kent WJ, et al. Comparative analyses of multi-species sequences from targeted genomic regions. Nature. 424: 788-93. PMID 12917688 DOI: 10.1038/nature01858  0.76
2003 Thomas JW, Schueler MG, Summers TJ, Blakesley RW, McDowell JC, Thomas PJ, Idol JR, Maduro VV, Lee-Lin SQ, Touchman JW, Bouffard GG, Beckstrom-Sternberg SM, Green ED. Pericentromeric duplications in the laboratory mouse. Genome Research. 13: 55-63. PMID 12529306 DOI: 10.1101/gr.791403  0.76
2002 Jackson T, Thomas J, Green ED, Noben-Trauth K. Genetic and physical maps of jerker (Espnje) on mouse chromosome 4 Biochemical and Biophysical Research Communications. 296: 1143-1147. PMID 12207892 DOI: 10.1016/S0006-291X(02)02023-5  0.76
2002 Thomas JW, Prasad AB, Summers TJ, Lee-Lin SQ, Maduro VV, Idol JR, Ryan JF, Thomas PJ, McDowell JC, Green ED. Parallel construction of orthologous sequence-ready clone contig maps in multiple species. Genome Research. 12: 1277-85. PMID 12176935 DOI: 10.1101/gr.283202  0.76
2002 Lipkin SM, Moens PB, Wang V, Lenzi M, Shanmugarajah D, Gilgeous A, Thomas J, Cheng J, Touchman JW, Green ED, Schwartzberg P, Collins FS, Cohen PE. Meiotic arrest and aneuploidy in MLH3-deficient mice Nature Genetics. 31: 385-390. PMID 12091911 DOI: 10.1038/ng931  0.76
2002 Thomas JW, Touchman JW. Vertebrate genome sequencing: building a backbone for comparative genomics. Trends in Genetics : Tig. 18: 104-8. PMID 11818143 DOI: 10.1016/S0168-9525(02)02599-4  0.76
2002 DeSilva U, Elnitski L, Idol JR, Doyle JL, Gan W, Thomas JW, Schwartz S, Dietrich NL, Beckstrom-Sternberg SM, McDowell JC, Blakesley RW, Bouffard GG, Thomas PJ, Touchman JW, Miller W, et al. Generation and comparative analysis of approximately 3.3 Mb of mouse genomic sequence orthologous to the region of human chromosome 7q11.23 implicated in Williams syndrome. Genome Research. 12: 3-15. PMID 11779826 DOI: 10.1101/gr.214802  0.76
2001 Summers TJ, Thomas JW, Lee-Lin SQ, Maduro VV, Idol JR, Green ED. Comparative physical mapping of targeted regions of the rat genome. Mammalian Genome : Official Journal of the International Mammalian Genome Society. 12: 508-12. PMID 11420612 DOI: 10.1007/s003350020021  0.76
2001 Sahoo T, Goenaga-Diaz E, Serebriiskii IG, Thomas JW, Kotova E, Cuellar JG, Peloquin JM, Golemis E, Beitinjaneh F, Green ED, Johnson EW, Marchuk DA. Computational and experimental analyses reveal previously undetected coding exons of the KRIT1 (CCM1) gene. Genomics. 71: 123-6. PMID 11161805 DOI: 10.1006/geno.2000.6426  0.76
2000 Jamison DC, Thomas JW, Green ED. ComboScreen facilitates the multiplex hybridization-based screening of high-density clone arrays. Bioinformatics (Oxford, England). 16: 678-84. PMID 11099254  0.76
2000 Thomas JW, Summers TJ, Lee-Lin SQ, Maduro VV, Idol JR, Mastrian SD, Ryan JF, Jamison DC, Green ED. Comparative genome mapping in the sequence-based era: early experience with human chromosome 7. Genome Research. 10: 624-33. PMID 10810084 DOI: 10.1101/gr.10.5.624  0.76
1999 Sahoo T, Johnson EW, Thomas JW, Kuehl PM, Jones TL, Dokken CG, Touchman JW, Gallione CJ, Lee-Lin SQ, Kosofsky B, Kurth JH, Louis DN, Mettler G, Morrison L, Gil-Nagel A, et al. Mutations in the gene encoding KRIT1, a Krev-1/rap1a binding protein, cause cerebral cavernous malformations (CCM1). Human Molecular Genetics. 8: 2325-33. PMID 10545614 DOI: 10.1093/hmg/8.12.2325  0.76
1999 Thomas JW, Lee-Lin SQ, Green ED. Human-mouse comparative mapping of the genomic region containing CDK6: Localization of an evolutionary breakpoint Mammalian Genome. 10: 764-767. PMID 10384057 DOI: 10.1007/s003359901088  0.76
1998 Thomas JW, Lamantia C, Magnuson T. X-ray-induced mutations in mouse embryonic stem cells Proceedings of the National Academy of Sciences of the United States of America. 95: 1114-1119. PMID 9448294 DOI: 10.1073/pnas.95.3.1114  0.76
1995 Holdener BC, Thomas JW, Schumacher A, Potter MD, Rinchik EM, Sharan SK, Magnuson T. Physical localization of eed: a region of mouse chromosome 7 required for gastrulation. Genomics. 27: 447-56. PMID 7558026 DOI: 10.1006/geno.1995.1076  0.76
1994 Thomas JW, Holdener BC, Magnuson T. Sequence analysis of a radiation-induced deletion breakpoint fusion in mouse Mammalian Genome. 5: 518-519. PMID 7949739 DOI: 10.1007/BF00369324  0.76
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