Fei Chen, Ph.D. - Publications

Affiliations: 
2011-2017 Biological Engineering Massachusetts Institute of Technology, Cambridge, MA, United States 
Website:
https://insitubiology.org

53 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Klughammer J, Abravanel DL, Segerstolpe Å, Blosser TR, Goltsev Y, Cui Y, Goodwin DR, Sinha A, Ashenberg O, Slyper M, Vigneau S, Jané-Valbuena J, Alon S, Caraccio C, Chen J, ... ... Chen F, et al. A multi-modal single-cell and spatial expression map of metastatic breast cancer biopsies across clinicopathological features. Nature Medicine. PMID 39478111 DOI: 10.1038/s41591-024-03215-z  0.495
2024 Labade AS, Chiang ZD, Comenho C, Reginato PL, Payne AC, Earl AS, Shrestha R, Duarte FM, Habibi E, Zhang R, Church GM, Boyden ES, Chen F, Buenrostro JD. Expansion genome sequencing links nuclear abnormalities to hotspots of aberrant euchromatin repression. Biorxiv : the Preprint Server For Biology. PMID 39386718 DOI: 10.1101/2024.09.24.614614  0.524
2024 Ludin A, Stirtz GL, Tal A, Nirmal AJ, Besson N, Jones SM, Pfaff KL, Manos M, Liu S, Barrera I, Gong Q, Rodrigues CP, Sahu A, Jerison E, Alessi JV, ... ... Chen F, et al. Craters on the melanoma surface facilitate tumor-immune interactions and demonstrate pathologic response to checkpoint blockade in humans. Biorxiv : the Preprint Server For Biology. PMID 39345527 DOI: 10.1101/2024.09.18.613595  0.601
2024 Coté A, O'Farrell A, Dardani I, Dunagin M, Coté C, Wan Y, Bayatpour S, Drexler HL, Alexander KA, Chen F, Wassie AT, Patel R, Pham K, Boyden ES, Berger S, et al. Post-transcriptional splicing can occur in a slow-moving zone around the gene. Elife. 12. PMID 38577979 DOI: 10.7554/eLife.91357  0.46
2023 Russell AJC, Weir JA, Nadaf NM, Shabet M, Kumar V, Kambhampati S, Raichur R, Marrero GJ, Liu S, Balderrama KS, Vanderburg CR, Shanmugam V, Tian L, Iorgulescu JB, Yoon CH, ... ... Chen F, et al. Publisher Correction: Slide-tags enables single-nucleus barcoding for multimodal spatial genomics. Nature. PMID 38110579 DOI: 10.1038/s41586-023-06961-1  0.591
2023 Russell AJC, Weir JA, Nadaf NM, Shabet M, Kumar V, Kambhampati S, Raichur R, Marrero GJ, Liu S, Balderrama KS, Vanderburg CR, Shanmugam V, Tian L, Iorgulescu JB, Yoon CH, ... ... Chen F, et al. Slide-tags enables single-nucleus barcoding for multimodal spatial genomics. Nature. PMID 38093010 DOI: 10.1038/s41586-023-06837-4  0.655
2023 Pigoni M, Uzquiano A, Paulsen B, Kedaigle A, Yang SM, Symvoulidis P, Adiconis X, Velasco S, Sartore R, Kim K, Tucewicz A, Tropp SY, Tsafou K, Jin X, Barrett L, ... Chen F, et al. Cell-type specific defects in PTEN-mutant cortical organoids converge on abnormal circuit activity. Human Molecular Genetics. PMID 37384417 DOI: 10.1093/hmg/ddad107  0.707
2023 Russell AJC, Weir JA, Nadaf NM, Shabet M, Kumar V, Kambhampati S, Raichur R, Marrero GJ, Liu S, Balderrama KS, Vanderburg CR, Shanmugam V, Tian L, Wu CJ, Yoon CH, ... ... Chen F, et al. Slide-tags: scalable, single-nucleus barcoding for multi-modal spatial genomics. Biorxiv : the Preprint Server For Biology. PMID 37066158 DOI: 10.1101/2023.04.01.535228  0.651
2022 Liu S, Iorgulescu JB, Li S, Borji M, Barrera-Lopez IA, Shanmugam V, Lyu H, Morriss JW, Garcia ZN, Murray E, Reardon DA, Yoon CH, Braun DA, Livak KJ, Wu CJ, ... Chen F, et al. Spatial maps of T cell receptors and transcriptomes reveal distinct immune niches and interactions in the adaptive immune response. Immunity. 55: 1940-1952.e5. PMID 36223726 DOI: 10.1016/j.immuni.2022.09.002  0.62
2021 Liu S, Punthambaker S, Iyer EPR, Ferrante T, Goodwin D, Fürth D, Pawlowski AC, Jindal K, Tam JM, Mifflin L, Alon S, Sinha A, Wassie AT, Chen F, Cheng A, et al. Barcoded oligonucleotides ligated on RNA amplified for multiplexed and parallel in situ analyses. Nucleic Acids Research. PMID 33693773 DOI: 10.1093/nar/gkab120  0.517
2021 Alon S, Goodwin DR, Sinha A, Wassie AT, Chen F, Daugharthy ER, Bando Y, Kajita A, Xue AG, Marrett K, Prior R, Cui Y, Payne AC, Yao CC, Suk HJ, et al. Expansion sequencing: Spatially precise in situ transcriptomics in intact biological systems. Science (New York, N.Y.). 371. PMID 33509999 DOI: 10.1126/science.aax2656  0.543
2020 Payne AC, Chiang ZD, Reginato PL, Mangiameli SM, Murray EM, Yao CC, Markoulaki S, Earl AS, Labade AS, Jaenisch R, Church GM, Boyden ES, Buenrostro JD, Chen F. In situ genome sequencing resolves DNA sequence and structure in intact biological samples. Science (New York, N.Y.). PMID 33384301 DOI: 10.1126/science.aay3446  0.472
2020 Rodriques SG, Chen LM, Liu S, Zhong ED, Scherrer JR, Boyden ES, Chen F. RNA timestamps identify the age of single molecules in RNA sequencing. Nature Biotechnology. PMID 33077959 DOI: 10.1038/s41587-020-0704-z  0.662
2020 Yu CJ, Barry NC, Wassie AT, Sinha A, Bhattacharya A, Asano S, Zhang C, Chen F, Hobert O, Goodman MB, Haspel G, Boyden ES. Expansion microscopy of . Elife. 9. PMID 32356725 DOI: 10.7554/Elife.46249  0.582
2020 Yu C(, Barry NC, Wassie AT, Sinha A, Bhattacharya A, Asano S, Zhang C, Chen F, Hobert O, Goodman MB, Haspel G, Boyden ES. Author response: Expansion microscopy of C. elegans Elife. DOI: 10.7554/Elife.46249.Sa2  0.463
2019 Zou L, Ge M, Zhao C, Meng Q, Wang H, Liu X, Lin CH, Xiao X, Lee WK, Shen Q, Chen F, Chen-Wiegart YK. Designing Multiscale Porous Metal by Simple Dealloying with 3D Morphological Evolution Mechanism Revealed via X-ray Nano-tomography. Acs Applied Materials & Interfaces. PMID 31846299 DOI: 10.1021/Acsami.9B16392  0.303
2019 Chen H, Liu S, Padula S, Lesman D, Griswold K, Lin A, Zhao T, Marshall JL, Chen F. Efficient, continuous mutagenesis in human cells using a pseudo-random DNA editor. Nature Biotechnology. PMID 31844291 DOI: 10.1038/S41587-019-0331-8  0.642
2019 Tillberg PW, Chen F. Expansion Microscopy: Scalable and Convenient Super-Resolution Microscopy. Annual Review of Cell and Developmental Biology. PMID 31424964 DOI: 10.1146/Annurev-Cellbio-100818-125320  0.362
2019 Rodriques SG, Stickels RR, Goeva A, Martin CA, Murray E, Vanderburg CR, Welch J, Chen LM, Chen F, Macosko EZ. Slide-seq: A scalable technology for measuring genome-wide expression at high spatial resolution. Science (New York, N.Y.). 363: 1463-1467. PMID 30923225 DOI: 10.1126/Science.Aaw1219  0.308
2019 Cho YK, Park D, Yang A, Chen F, Chuong AS, Klapoetke NC, Boyden ES. Multidimensional screening yields channelrhodopsin variants having improved photocurrent and order-of-magnitude reductions in calcium and proton currents. The Journal of Biological Chemistry. PMID 30610117 DOI: 10.1074/Jbc.Ra118.006996  0.495
2019 Zhang C, Chen F, Huang Z, Jia M, Chen G, Ye Y, Lin Y, Liu W, Chen B, Shen Q, Zhang L, Lavernia EJ. Additive manufacturing of functionally graded materials: A review Materials Science and Engineering a-Structural Materials Properties Microstructure and Processing. 764: 138209. DOI: 10.1016/J.Msea.2019.138209  0.312
2019 Gu T, Chen F, Shen Q, Zhang L. Low-temperature preparation of porous SiC ceramics using phosphoric acid as a pore-forming agent and a binder Ceramics International. 45: 16470-16475. DOI: 10.1016/J.Ceramint.2019.05.179  0.323
2018 Oran D, Rodriques SG, Gao R, Asano S, Skylar-Scott MA, Chen F, Tillberg PW, Marblestone AH, Boyden ES. 3D nanofabrication by volumetric deposition and controlled shrinkage of patterned scaffolds. Science (New York, N.Y.). 362: 1281-1285. PMID 30545883 DOI: 10.1126/Science.Aau5119  0.482
2018 Asano SM, Gao R, Wassie AT, Tillberg PW, Chen F, Boyden ES. Expansion Microscopy: Protocols for Imaging Proteins and RNA in Cells and Tissues. Current Protocols in Cell Biology. e56. PMID 30070431 DOI: 10.1002/Cpcb.56  0.595
2018 Gu T, Chen F, Yuan HL, Shen Q, Zhang LM. Low-Temperature Sintering of Porous Silicon Carbide Ceramics with H3PO4 as an Additive Solid State Phenomena. 281: 311-315. DOI: 10.4028/Www.Scientific.Net/Ssp.281.311  0.31
2017 Zhao Y, Bucur O, Irshad H, Chen F, Weins A, Stancu AL, Oh EY, DiStasio M, Torous V, Glass B, Stillman IE, Schnitt SJ, Beck AH, Boyden ES. Nanoscale imaging of clinical specimens using pathology-optimized expansion microscopy. Nature Biotechnology. PMID 28714966 DOI: 10.1038/Nbt.3892  0.615
2017 Chang JB, Chen F, Yoon YG, Jung EE, Babcock H, Kang JS, Asano S, Suk HJ, Pak N, Tillberg PW, Wassie AT, Cai D, Boyden ES. Iterative expansion microscopy. Nature Methods. PMID 28417997 DOI: 10.1038/Nmeth.4261  0.737
2017 Chen F, Yang D, Zha W, Zhu B, Zhang Y, Li J, Gu Y, Shen Q, Zhang L, Sadoway DR. Solid polymer electrolytes incorporating cubic Li7La3Zr2O12 for all-solid-state lithium rechargeable batteries Electrochimica Acta. 258: 1106-1114. DOI: 10.1016/J.Electacta.2017.11.164  0.305
2016 Chen F, Wassie AT, Cote AJ, Sinha A, Alon S, Asano S, Daugharthy ER, Chang JB, Marblestone A, Church GM, Raj A, Boyden ES. Nanoscale imaging of RNA with expansion microscopy. Nature Methods. 13: 679-84. PMID 27376770 DOI: 10.1038/Nmeth.3899  0.566
2016 Tillberg PW, Chen F, Piatkevich KD, Zhao Y, Yu CJ, English BP, Gao L, Martorell A, Suk HJ, Yoshida F, DeGennaro EM, Roossien DH, Gong G, Seneviratne U, Tannenbaum SR, et al. Protein-retention expansion microscopy of cells and tissues labeled using standard fluorescent proteins and antibodies. Nature Biotechnology. PMID 27376584 DOI: 10.1038/Nbt.3625  0.738
2016 Zhang YS, Chang JB, Alvarez MM, Trujillo-de Santiago G, Aleman J, Batzaya B, Krishnadoss V, Ramanujam AA, Kazemzadeh-Narbat M, Chen F, Tillberg PW, Dokmeci MR, Boyden ES, Khademhosseini A. Hybrid Microscopy: Enabling Inexpensive High-Performance Imaging through Combined Physical and Optical Magnifications. Scientific Reports. 6: 22691. PMID 26975883 DOI: 10.1038/Srep22691  0.54
2016 Xu MH, Song JG, Wang RH, Li SB, Wang N, Yu SY, Yan HX, Xiao TT, Chen F. Effect of Sintering Aids on the Properties of Porous YAG Ceramics Key Engineering Materials. 697: 178-181. DOI: 10.4028/Www.Scientific.Net/Kem.697.178  0.31
2016 Xu MH, Song JG, Du DM, Wang F, Li YL, Ji GC, Chen F. The Mechanism of Controlling Pore Microstructure for YAG Porous Ceramics Key Engineering Materials. 680: 216-219. DOI: 10.4028/Www.Scientific.Net/Kem.680.216  0.301
2016 Hu S, Chen F, Li JG, Shen Q, Huang ZX, Zhang LM. The ceramifying process and mechanical properties of silicone rubber/ ammonium polyphosphate/ aluminium hydroxide/ mica composites Polymer Degradation and Stability. 126: 196-203. DOI: 10.1016/J.Polymdegradstab.2016.02.010  0.316
2016 Liu D, Xiong Y, Li P, Lin Y, Chen F, Zhang L, Schoenung JM, Lavernia EJ. Microstructure and mechanical behavior of NS/UFG aluminum prepared by cryomilling and spark plasma sintering Journal of Alloys and Compounds. 679: 426-435. DOI: 10.1016/J.Jallcom.2016.04.073  0.3
2015 Chen F, Tillberg PW, Boyden ES. Optical imaging. Expansion microscopy. Science (New York, N.Y.). 347: 543-8. PMID 25592419 DOI: 10.1126/Science.1260088  0.545
2015 Zhang Y, Cai J, Chen F, Tu R, Shen Q, Zhang X, Zhang L. Preparation of cubic Li7La3Zr2O12 solid electrolyte using a nano-sized core-shell structured precursor Journal of Alloys and Compounds. 644: 793-798. DOI: 10.1016/J.Jallcom.2015.05.085  0.331
2014 Schmidt D, Tillberg PW, Chen F, Boyden ES. A fully genetically encoded protein architecture for optical control of peptide ligand concentration. Nature Communications. 5: 3019. PMID 24407101 DOI: 10.1038/Ncomms4019  0.497
2014 Zhang Y, Chen F, Tu R, Shen Q, Zhang L. Effect of Al2O3 on microstructure and ionic conductivity of Li7La3Zr2O12 solid electrolytes prepared by plasma activated sintering Key Engineering Materials. 616: 217-222. DOI: 10.4028/Www.Scientific.Net/Kem.616.217  0.302
2014 Zhao WB, Liang X, Hu FM, You LL, Ma BF, Wang RL, Liu HY, Yang GS, Tan B, Song JG, Wang F, Chen F. Preparation and properties of YAG powder and porous ceramics Advanced Materials Research. 1058: 217-220. DOI: 10.4028/Www.Scientific.Net/Amr.1058.217  0.32
2014 Zhang Y, Chen F, Tu R, Shen Q, Zhang L. Field assisted sintering of dense Al-substituted cubic phase Li 7La3Zr2O12 solid electrolytes Journal of Power Sources. 268: 960-964. DOI: 10.1016/J.Jpowsour.2014.03.148  0.313
2012 Wang ZH, Chen F, Shen Q, Zhang LM. Synthesis and Optical Properties of Single-Crystalline Silicon Nitride Nanowires with Controlled Dimensionality Key Engineering Materials. 106-109. DOI: 10.4028/Www.Scientific.Net/Kem.512-515.106  0.302
2012 Chen F, Yang Y, Shen Q, Zhang L. Macro/micro structure dependence of mechanical strength of low temperature sintered silicon carbide ceramic foams Ceramics International. 38: 5223-5229. DOI: 10.1016/J.Ceramint.2012.03.030  0.312
2011 Chen F, Ma L, Shen Q, Wang C, Zhang L. Pressureless sintering of silicon nitride ceramics with porous gradient structure for gas filter application International Journal of Materials & Product Technology. 42: 3. DOI: 10.1504/Ijmpt.2011.044909  0.32
2011 Chen F, Ma L, Shen Q, Zhang L. Pore structure control of starch processed silicon nitride porous ceramics with near-zero shrinkage Materials Letters. 65: 1410-1412. DOI: 10.1016/J.Matlet.2011.02.016  0.301
2010 Xiong YL, Shen Q, Chen F, Zheng J, Zhang LM. High Temperature Ceramifying Behavior of SR/Al2O3 Composites Advanced Materials Research. 168-170. DOI: 10.4028/Www.Scientific.Net/Amr.105-106.168  0.307
2010 Chen F, Li L, Yan F, Shen Q, Zhang L. Optimal design and preparation of silicon nitride ceramic radome material with gradient porous structure International Journal of Materials & Product Technology. 39: 72. DOI: 10.1504/Ijmpt.2010.034261  0.303
2010 Li Y, Chen F, Li L, Zhang W, Yu H, Shan Y, Shen Q, Jiang H. Gas Pressure Sintering of Arbitrary Porous Silicon Nitride Ceramics with High Mechanical Strength Journal of the American Ceramic Society. 93: 1565-1568. DOI: 10.1111/J.1551-2916.2010.03603.X  0.306
2009 Li L, Li Y, Yu HL, Chen F, Wang HS, Jiang HY. Effect of Sintering Temperature on the Properties of Porous Silicon Nitride Ceramics Advanced Materials Research. 66: 85-88. DOI: 10.4028/Www.Scientific.Net/Amr.66.85  0.309
2008 Chen F, Shen Q, Schoenung JM, Zhang L. Synthesis and Pressureless Sintering of Zirconium Phosphate Ceramics Journal of the American Ceramic Society. 91: 3173-3180. DOI: 10.1111/J.1551-2916.2008.02610.X  0.31
2008 Chen F, Shen Q, Yan F, Zhang L. Spark plasma sintering of α-Si3N4 ceramics with MgO–AlPO4 as sintering additives Materials Chemistry and Physics. 107: 67-71. DOI: 10.1016/J.Matchemphys.2007.06.042  0.318
2007 Chen F, Shen Q, Yan F, Zhang L. Pressureless Sintering of α‐Si3N4 Porous Ceramics Using a H3PO4 Pore‐Forming Agent Journal of the American Ceramic Society. 90: 2379-2383. DOI: 10.1111/J.1551-2916.2007.01800.X  0.326
2006 Chen F, Shen Q, Yan FQ, Zhang LM. Preparation of zirconium pyrophosphate bonded silicon nitride porous ceramics Materials Science and Technology. 22: 915-918. DOI: 10.1179/174328406X100699  0.328
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