| Year |
Citation |
Score |
| 2020 |
Jagtap P, Abdi F, Rungger M, Zamani M, Caccamo M. Software Fault Tolerance for Cyber-Physical Systems via Full System Restart Acm Transactions On Cyber-Physical Systems. 4: 1-20. DOI: 10.1145/3407183 |
0.626 |
|
| 2020 |
Jagtap P, Soudjani S, Zamani M. Formal Synthesis of Stochastic Systems via Control Barrier Certificates Ieee Transactions On Automatic Control. 1-1. DOI: 10.1109/Tac.2020.3013916 |
0.586 |
|
| 2020 |
Jagtap P, Zamani M. Symbolic Models for Retarded Jump-Diffusion Systems Automatica. 111: 108666. DOI: 10.1016/J.Automatica.2019.108666 |
0.714 |
|
| 2018 |
Deshpande A, Jagtap P, Bansode P, Mahindrakar A, Singh NM. Complex Laplacian-Based Distributed Control For Multi-Agent Network Advances in Complex Systems. 21: 1-15. DOI: 10.1142/S0219525918500157 |
0.315 |
|
| 2018 |
Jagtap P, Zamani M. Backstepping Design for Incremental Stability of Stochastic Hamiltonian Systems with Jumps Ieee Transactions On Automatic Control. 63: 255-261. DOI: 10.1109/Tac.2017.2720592 |
0.706 |
|
| 2018 |
Saoud A, Jagtap P, Zamani M, Girard A. Compositional Abstraction-based Synthesis for Cascade Discrete-Time Control Systems Ifac-Papersonline. 51: 13-18. DOI: 10.1016/J.Ifacol.2018.08.003 |
0.688 |
|
| 2016 |
Jagtap P, Raut P, Kumar P, Gupta A, Singh NM, Kazi F. Control of Autonomous Underwater Vehicle using Reduced Order Model Predictive Control in Three Dimensional Space Ifac-Papersonline. 49: 772-777. DOI: 10.1016/J.Ifacol.2016.03.150 |
0.369 |
|
| Low-probability matches (unlikely to be authored by this person) |
| 2016 |
Thomas S, Pillai GN, Pal K, Jagtap P. Prediction of ground motion parameters using randomized ANFIS (RANFIS) Applied Soft Computing Journal. 40: 624-634. DOI: 10.1016/J.Asoc.2015.12.013 |
0.25 |
|
| 2014 |
Jagtap P, Kumar P. Evaluating shock absorption behavior of small-sized systems under programmable electric field. The Review of Scientific Instruments. 85: 113903. PMID 25430120 DOI: 10.1063/1.4900842 |
0.172 |
|
| 2018 |
Mikušek J, Jansa P, Jagtap PR, Vašíček T, Císařová I, Matoušová E. Enantioselective Synthesis of All-Carbon Quaternary Centers Structurally Related to Amaryllidaceae Alkaloids. Chemistry (Weinheim An Der Bergstrasse, Germany). PMID 29775495 DOI: 10.1002/chem.201802493 |
0.158 |
|
| 2021 |
Mehta S, Kumar P, Crane M, Johnson JE, Sajulga R, Nguyen DDA, McGowan T, Arntzen MØ, Griffin TJ, Jagtap PD. Updates on metaQuantome Software for Quantitative Metaproteomics. Journal of Proteome Research. PMID 33683127 DOI: 10.1021/acs.jproteome.0c00960 |
0.149 |
|
| 2019 |
Easterly CW, Sajulga R, Mehta S, Johnson J, Kumar P, Hubler S, Mesuere B, Rudney J, Griffin TJ, Jagtap PD. metaQuantome: An integrated, quantitative metaproteomics approach reveals connections between taxonomy and protein function in complex microbiomes. Molecular & Cellular Proteomics : McP. PMID 31235611 DOI: 10.1074/Mcp.Ra118.001240 |
0.146 |
|
| 2014 |
Jagtap PR, Ford L, Deister E, Pohl R, Císa?ová I, Hodek J, Weber J, Mackman R, Bahador G, Jahn U. Highly functionalized and potent antiviral cyclopentane derivatives formed by a tandem process consisting of organometallic, transition-metal-catalyzed, and radical reaction steps. Chemistry (Weinheim An Der Bergstrasse, Germany). 20: 10298-304. PMID 25043655 DOI: 10.1002/Chem.201402595 |
0.135 |
|
| 2018 |
Johnson JE, Kumar P, Easterly C, Esler M, Mehta S, Eschenlauer AC, Hegeman AD, Jagtap PD, Griffin TJ. Improve your Galaxy text life: The Query Tabular Tool. F1000research. 7: 1604. PMID 30519459 DOI: 10.12688/F1000Research.16450.2 |
0.113 |
|
| 2014 |
Jagtap PD, Johnson JE, Onsongo G, Sadler FW, Murray K, Wang Y, Shenykman GM, Bandhakavi S, Smith LM, Griffin TJ. Flexible and accessible workflows for improved proteogenomic analysis using the Galaxy framework. Journal of Proteome Research. 13: 5898-908. PMID 25301683 DOI: 10.1021/Pr500812T |
0.107 |
|
| 2018 |
Jagtap PR, Císařová I, Jahn U. Bioinspired total synthesis of tetrahydrofuran lignans by tandem nucleophilic addition/redox isomerization/oxidative coupling and cycloetherification reactions as key steps. Organic & Biomolecular Chemistry. 16: 750-755. PMID 29308468 DOI: 10.1039/c7ob02848b |
0.104 |
|
| 2018 |
Easterly C, Jagtap P, Szeinbaum N, Gruening B, Parsons L, Hubler S, Mehta S, Sajulga R, Mesuere B, Johnson J, Tanca A, Kolmeder C, Kumar P, Glass J, Rudney J, et al. Quantifying functional microbiomes: an integrated, quantitative metaproteomics approach F1000research. 7. DOI: 10.7490/F1000Research.1115790.1 |
0.098 |
|
| 2020 |
Sajulga R, Easterly C, Riffle M, Mesuere B, Muth T, Mehta S, Kumar P, Johnson J, Gruening BA, Schiebenhoefer H, Kolmeder CA, Fuchs S, Nunn BL, Rudney J, Griffin TJ, ... Jagtap PD, et al. Survey of metaproteomics software tools for functional microbiome analysis. Plos One. 15: e0241503. PMID 33170893 DOI: 10.1371/journal.pone.0241503 |
0.098 |
|
| 2018 |
Kumar P, Panigrahi P, Johnson J, Weber WJ, Mehta S, Sajulga R, Easterly C, Crooker BA, Heydarian M, Anamika K, Griffin TJ, Jagtap P. QuanTP: A software resource for quantitative proteo-transcriptomic comparative data analysis and informatics. Journal of Proteome Research. PMID 30582332 DOI: 10.1021/Acs.Jproteome.8B00727 |
0.097 |
|
| 2019 |
Madane P, Das AK, Pateiro M, Nanda PK, Bandyopadhyay S, Jagtap P, Barba FJ, Shewalkar A, Maity B, Lorenzo JM. Drumstick () Flower as an Antioxidant Dietary Fibre in Chicken Meat Nuggets. Foods (Basel, Switzerland). 8. PMID 31374943 DOI: 10.3390/foods8080307 |
0.093 |
|
| 2019 |
Dimitrova-Paternoga L, Jagtap PKA, Chen PC, Hennig J. Integrative Structural Biology of Protein-RNA Complexes. Structure (London, England : 1993). PMID 31864810 DOI: 10.1016/j.str.2019.11.017 |
0.09 |
|
| 2005 |
Jagtap PG, Baloglu E, Southan G, Williams W, Roy A, Nivorozhkin A, Landrau N, Desisto K, Salzman AL, Szabó C. Facile and convenient syntheses of 6,11-dihydro-5H-indeno[1,2-c]isoquinolin- 5-ones and 6,11-dihydro-5H-indolo[3,2-c]isoquinolin-5-one. Organic Letters. 7: 1753-6. PMID 15844898 DOI: 10.1021/OL050331M |
0.088 |
|
| 2020 |
Mehta S, Easterly CW, Sajulga R, Millikin RJ, Argentini A, Eguinoa I, Martens L, Shortreed MR, Smith LM, McGowan T, Kumar P, Johnson JE, Griffin TJ, Jagtap PD. Precursor Intensity-Based Label-Free Quantification Software Tools for Proteomic and Multi-Omic Analysis within the Galaxy Platform. Proteomes. 8. PMID 32650610 DOI: 10.3390/Proteomes8030015 |
0.087 |
|
| 2004 |
Jagtap PG, Southan GJ, Baloglu E, Ram S, Mabley JG, Marton A, Salzman A, Szabó C. The discovery and synthesis of novel adenosine substituted 2,3-dihydro-1H-isoindol-1-ones: potent inhibitors of poly(ADP-ribose) polymerase-1 (PARP-1). Bioorganic & Medicinal Chemistry Letters. 14: 81-5. PMID 14684303 DOI: 10.1016/J.Bmcl.2003.10.007 |
0.086 |
|
| 2020 |
Graf von Armansperg B, Koller F, Gericke N, Hellwig M, Jagtap PKA, Heermann R, Hennig J, Henle T, Lassak J. Transcriptional regulation of the N -fructoselysine metabolism in Escherichia coli by global and substrate-specific cues. Molecular Microbiology. PMID 32979851 DOI: 10.1111/mmi.14608 |
0.084 |
|
| 2007 |
Jagtap PG, Degterev A, Choi S, Keys H, Yuan J, Cuny GD. Structure-activity relationship study of tricyclic necroptosis inhibitors. Journal of Medicinal Chemistry. 50: 1886-95. PMID 17361994 DOI: 10.1021/Jm061016O |
0.084 |
|
| 2002 |
Jagtap PG, Baloglu E, Barron DM, Bane S, Kingston DG. Design and synthesis of a combinatorial chemistry library of 7-acyl, 10-acyl, and 7,10-diacyl analogues of paclitaxel (taxol) using solid phase synthesis. Journal of Natural Products. 65: 1136-42. PMID 12193017 DOI: 10.1021/Np010552A |
0.078 |
|
| 2009 |
Jagtap PG, Chen Z, Koppetsch K, Piro E, Fronce P, Southan GJ, Klotz KN. Synthesis of (R)-3,4-dihydro-2H-pyran-2-carboxaldehyde: application to the synthesis of potent adenosine A(2A) and A(3) receptor agonist. Tetrahedron Letters. 50: 2693-2696. PMID 20161338 DOI: 10.1016/j.tetlet.2009.03.148 |
0.077 |
|
| 2015 |
Rudney JD, Jagtap PD, Reilly CS, Chen R, Markowski TW, Higgins L, Johnson JE, Griffin TJ. Protein relative abundance patterns associated with sucrose-induced dysbiosis are conserved across taxonomically diverse oral microcosm biofilm models of dental caries. Microbiome. 3: 69. PMID 26684897 DOI: 10.1186/S40168-015-0136-Z |
0.077 |
|
| 2021 |
Mehta S, Crane M, Leith E, Batut B, Hiltemann S, Arntzen MØ, Kunath BJ, Delogu F, Sajulga R, Kumar P, Johnson JE, Griffin TJ, Jagtap PD. ASaiM-MT: a validated and optimized ASaiM workflow for metatranscriptomics analysis within Galaxy framework F1000research. 10: 103. DOI: 10.12688/F1000RESEARCH.28608.1 |
0.072 |
|
| 2018 |
Blank C, Easterly C, Gruening B, Johnson J, Kolmeder CA, Kumar P, May D, Mehta S, Mesuere B, Brown Z, Elias JE, Hervey WJ, McGowan T, Muth T, Nunn B, ... ... Jagtap PD, et al. Disseminating Metaproteomic Informatics Capabilities and Knowledge Using the Galaxy-P Framework. Proteomes. 6. PMID 29385081 DOI: 10.3390/Proteomes6010007 |
0.072 |
|
| 2012 |
Jagtap P, McGowan T, Bandhakavi S, Tu ZJ, Seymour S, Griffin TJ, Rudney JD. Deep metaproteomic analysis of human salivary supernatant. Proteomics. 12: 992-1001. PMID 22522805 DOI: 10.1002/Pmic.201100503 |
0.069 |
|
| 2015 |
Jagtap PD, Blakely A, Murray K, Stewart S, Kooren J, Johnson JE, Rhodus NL, Rudney J, Griffin TJ. Metaproteomic analysis using the Galaxy framework. Proteomics. PMID 26058579 DOI: 10.1002/Pmic.201500074 |
0.067 |
|
| 2006 |
Jagtap P, Michailidis G, Zielke R, Walker AK, Patel N, Strahler JR, Driks A, Andrews PC, Maddock JR. Early events of Bacillus anthracis germination identified by time-course quantitative proteomics. Proteomics. 6: 5199-211. PMID 16927434 DOI: 10.1002/Pmic.200600314 |
0.066 |
|
| 2017 |
Chambers MC, Jagtap PD, Johnson JE, McGowan T, Kumar P, Onsongo G, Guerrero CR, Barsnes H, Vaudel M, Martens L, Grüning B, Cooke IR, Heydarian M, Reddy KL, Griffin TJ. An Accessible Proteogenomics Informatics Resource for Cancer Researchers. Cancer Research. 77: e43-e46. PMID 29092937 DOI: 10.1158/0008-5472.Can-17-0331 |
0.065 |
|
| 2005 |
Teng X, Degterev A, Jagtap P, Xing X, Choi S, Denu R, Yuan J, Cuny GD. Structure-activity relationship study of novel necroptosis inhibitors. Bioorganic & Medicinal Chemistry Letters. 15: 5039-44. PMID 16153840 DOI: 10.1016/J.Bmcl.2005.07.077 |
0.061 |
|
| 2005 |
Jagtap P, Szabo C. Poly(ADP-ribose) polymerase and the therapeutic effects of its inhibitors Nature Reviews Drug Discovery. 4: 421-440. PMID 15864271 DOI: 10.1038/Nrd1718 |
0.061 |
|
| 2018 |
Batut B, Hiltemann S, Bagnacani A, Baker D, Bhardwaj V, Blank C, Bretaudeau A, Brillet-Guéguen L, Čech M, Chilton J, Clements D, Doppelt-Azeroual O, Erxleben A, Freeberg MA, Gladman S, ... ... Jagtap P, et al. Community-Driven Data Analysis Training for Biology. Cell Systems. 6: 752-758.e1. PMID 29953864 DOI: 10.1016/J.Cels.2018.05.012 |
0.059 |
|
| 2013 |
Abouzgheib W, Meena N, Jagtap P, Schorr C, Boujaoude Z, Bartter T. Percutaneous dilational tracheostomy in patients receiving antiplatelet therapy: is it safe? Journal of Bronchology & Interventional Pulmonology. 20: 322-5. PMID 24162115 DOI: 10.1097/LBR.0000000000000023 |
0.059 |
|
| 2016 |
Jagtap P, Sritharan V, Gupta S. Nanotheranostic Approaches for the Management of Bloodstream Bacterial Infections (Manuscript id # JN2016292). Nanomedicine : Nanotechnology, Biology, and Medicine. PMID 27702606 DOI: 10.1016/J.Nano.2016.09.005 |
0.058 |
|
| 2018 |
Argentini A, Staes A, Grüning BA, Mehta S, Easterly C, Griffin TJ, Jagtap P, Impens F, Martens L. An update on the moFF Algorithm for label-free quantitative proteomics. Journal of Proteome Research. PMID 30511867 DOI: 10.1021/Acs.Jproteome.8B00708 |
0.058 |
|
| 2002 |
Kingston DG, Jagtap PG, Yuan H, Samala L. The chemistry of taxol and related taxoids Fortschritte Der Chemie Organischer Naturstoffe. 84: 53-225. PMID 12132389 DOI: 10.1007/978-3-7091-6160-9_2 |
0.058 |
|
| 2019 |
Jagtap PKA, Asami S, Sippel C, Kaila VRI, Hausch F, Sattler M. Corrigendum: Selective Inhibitors of FKBP51 Employ Conformational Selection of Dynamic Invisible States. Angewandte Chemie (International Ed. in English). 58: 13619. PMID 31549791 DOI: 10.1002/Anie.201908888 |
0.058 |
|
| 2002 |
Jagtap P, Soriano FG, Virág L, Liaudet L, Mabley J, Szabó E, Haskó G, Marton A, Lorigados CB, Gallyas F, Sümegi B, Hoyt DG, Baloglu E, VanDuzer J, Salzman AL, et al. Novel phenanthridinone inhibitors of poly (adenosine 5'-diphosphate-ribose) synthetase: potent cytoprotective and antishock agents. Critical Care Medicine. 30: 1071-82. PMID 12006805 DOI: 10.1097/00003246-200205000-00019 |
0.056 |
|
| 2019 |
Volkwein W, Krafczyk R, Jagtap PKA, Parr M, Mankina E, Macošek J, Guo Z, Fürst MJLJ, Pfab M, Frishman D, Hennig J, Jung K, Lassak J. Switching the Post-translational Modification of Translation Elongation Factor EF-P. Frontiers in Microbiology. 10: 1148. PMID 31178848 DOI: 10.3389/fmicb.2019.01148 |
0.055 |
|
| 2014 |
Sheynkman GM, Johnson JE, Jagtap PD, Shortreed MR, Onsongo G, Frey BL, Griffin TJ, Smith LM. Using Galaxy-P to leverage RNA-Seq for the discovery of novel protein variations. Bmc Genomics. 15: 703. PMID 25149441 DOI: 10.1186/1471-2164-15-703 |
0.053 |
|
| 2018 |
Jagdale S, Bhargava K, Bhosale S, Kumar T, Chawla M, Jagtap P. Comparative evaluation of coronal discoloration induced by two triple antibiotic revascularization protocols when used at varying depths of temporary sealing material at the end of varying time periods. Journal of Conservative Dentistry : Jcd. 21: 388-393. PMID 30122819 DOI: 10.4103/JCD.JCD_117_17 |
0.053 |
|
| 2015 |
Vermillion KL, Jagtap P, Johnson JE, Griffin TJ, Andrews MT. Characterizing cardiac molecular mechanisms of mammalian hibernation via quantitative proteogenomics. Journal of Proteome Research. PMID 26435507 DOI: 10.1021/Acs.Jproteome.5B00575 |
0.053 |
|
| 2019 |
Saito MA, Bertrand EM, Duffy ME, Gaylord DA, Held NA, Hervey WJ, Hettich RL, Jagtap P, Janech MG, Kinkade DB, Leary D, McIlvin M, Moore E, Morris R, Neely BA, et al. Progress and Challenges in Ocean Metaproteomics and Proposed Best Practices for Data Sharing. Journal of Proteome Research. PMID 30702898 DOI: 10.1021/Acs.Jproteome.8B00761 |
0.052 |
|
| 2013 |
Jagtap PK, Verma SK, Vithani N, Bais VS, Prakash B. Crystal structures identify an atypical two-metal-ion mechanism for uridyltransfer in GlmU: its significance to sugar nucleotidyl transferases. Journal of Molecular Biology. 425: 1745-59. PMID 23485416 DOI: 10.1016/j.jmb.2013.02.019 |
0.052 |
|
| 2015 |
Boekel J, Chilton JM, Cooke IR, Horvatovich PL, Jagtap PD, Käll L, Lehtiö J, Lukasse P, Moerland PD, Griffin TJ. Multi-omic data analysis using Galaxy. Nature Biotechnology. 33: 137-9. PMID 25658277 DOI: 10.1038/Nbt.3134 |
0.051 |
|
| 2010 |
Janagama HK, Senthilkumar, Bannantine JP, Kugadas A, Jagtap P, Higgins L, Witthuhn B, Sreevatsan S. Iron-sparing response of Mycobacterium avium subsp. paratuberculosis is strain dependent. Bmc Microbiology. 10: 268. PMID 20969756 DOI: 10.1186/1471-2180-10-268 |
0.051 |
|
| 2020 |
Jagtap P, Prasad P, Pateria A, Deshmukh SD, Gupta S. A Single Step Bioassay Mimicking TLR4-LPS Pathway and the Role of MD2 and CD14 Coreceptors. Frontiers in Immunology. 11: 5. PMID 32038655 DOI: 10.3389/Fimmu.2020.00005 |
0.05 |
|
| 2013 |
Jagtap P, Goslinga J, Kooren JA, McGowan T, Wroblewski MS, Seymour SL, Griffin TJ. A two-step database search method improves sensitivity in peptide sequence matches for metaproteomics and proteogenomics studies. Proteomics. 13: 1352-7. PMID 23412978 DOI: 10.1002/Pmic.201200352 |
0.05 |
|
| 2012 |
Jagtap P, Bandhakavi S, Higgins L, McGowan T, Sa R, Stone MD, Chilton J, Arriaga EA, Seymour SL, Griffin TJ. Workflow for analysis of high mass accuracy salivary data set using MaxQuant and ProteinPilot search algorithm. Proteomics. 12: 1726-30. PMID 22623410 DOI: 10.1002/Pmic.201100097 |
0.049 |
|
| 2016 |
Griffin T, Jagtap P, Johnson J. Using Galaxy for proteomic and integrative multi-omic data analysis F1000research. 5. DOI: 10.7490/F1000Research.1112908.1 |
0.049 |
|
| 2019 |
Stewart PA, Kuenzi BM, Mehta S, Kumar P, Johnson JE, Jagtap P, Griffin TJ, Haura EB. The Galaxy Platform for Reproducible Affinity Proteomic Mass Spectrometry Data Analysis. Methods in Molecular Biology (Clifton, N.J.). 1977: 249-261. PMID 30980333 DOI: 10.1007/978-1-4939-9232-4_16 |
0.049 |
|
| 2018 |
Kumar P, Panigrahi P, Johnson J, Easterly C, Mehta S, Rajczewski A, Sajulga R, Heydarian M, Krishanpal A, Griffin T, Jagtap P. Integrative proteo-transcriptomics workflows within the Galaxy framework to explore thecorrelation between the expression of RNA and proteins F1000research. 7. DOI: 10.7490/F1000Research.1115858.1 |
0.048 |
|
| 2011 |
Chang CY, Hobley L, Till R, Capeness M, Kanna M, Burtt W, Jagtap P, Aizawa S, Sockett RE. The Bdellovibrio bacteriovorus twin-arginine transport system has roles in predatory and prey-independent growth. Microbiology (Reading, England). 157: 3079-93. PMID 21903758 DOI: 10.1099/mic.0.052449-0 |
0.048 |
|
| 2020 |
Bhargava M, Viken KJ, Barkes B, Griffin TJ, Gillespie M, Jagtap PD, Sajulga R, Peterson EJ, Dincer HE, Li L, Restrepo CI, O'Connor BP, Fingerlin TE, Perlman DM, Maier LA. Novel protein pathways in development and progression of pulmonary sarcoidosis. Scientific Reports. 10: 13282. PMID 32764642 DOI: 10.1038/S41598-020-69281-8 |
0.046 |
|
| 2018 |
Sajulga R, Mehta S, Kumar P, Johnson JE, Guerrero CR, Ryan MC, Karchin R, Jagtap PD, Griffin TJ. Bridging the Chromosome-Centric and Biology and Disease Human Proteome Projects: Accessible and automated tools for interpreting biological and pathological impact of protein sequence variants detected via proteogenomics. Journal of Proteome Research. PMID 30130115 DOI: 10.1021/Acs.Jproteome.8B00404 |
0.046 |
|
| 2005 |
Jagtap PG, Baloglu E, Southan GJ, Mabley JG, Li H, Zhou J, van Duzer J, Salzman AL, Szabó C. Discovery of potent poly(ADP-ribose) polymerase-1 inhibitors from the modification of indeno[1,2-c]isoquinolinone. Journal of Medicinal Chemistry. 48: 5100-3. PMID 16078828 DOI: 10.1021/Jm0502891 |
0.045 |
|
| 2018 |
Jagtap P, Singh R, Deepika K, Sritharan V, Gupta S. A flow through assay for rapid, bedside stratification of bloodstream bacterial infection in critically ill patients: a pilot study. Journal of Clinical Microbiology. PMID 29925639 DOI: 10.1128/Jcm.00408-18 |
0.044 |
|
| 2015 |
Mane VB, Jagtap PE, Nagane NS, Dhonde SP, Belwalkar GJ, Mane VP. The significance of evalution of haematocrit in plateletpheresis donors. Journal of Clinical and Diagnostic Research : Jcdr. 9: BC06-7. PMID 26023547 DOI: 10.7860/JCDR/2015/8292.5746 |
0.042 |
|
| 2020 |
Madane P, Das AK, Nanda PK, Bandyopadhyay S, Jagtap P, Shewalkar A, Maity B. Dragon fruit () peel as antioxidant dietary fibre on quality and lipid oxidation of chicken nuggets. Journal of Food Science and Technology. 57: 1449-1461. PMID 32180641 DOI: 10.1007/s13197-019-04180-z |
0.042 |
|
| 2021 |
Rajczewski AT, Mehta S, Nguyen DDA, Grüning B, Johnson JE, McGowan T, Griffin TJ, Jagtap PD. A rigorous evaluation of optimal peptide targets for MS-based clinical diagnostics of Coronavirus Disease 2019 (COVID-19). Clinical Proteomics. 18: 15. PMID 33971807 DOI: 10.1186/s12014-021-09321-1 |
0.042 |
|
| 2019 |
Hubler SL, Kumar P, Mehta S, Easterly C, Johnson JE, Jagtap PD, Griffin TJ. Challenges in Peptide-Spectrum Matching: a Robust and Reproducible Statistical Framework for Removing Low-Accuracy, High-Scoring Hits. Journal of Proteome Research. PMID 31793300 DOI: 10.1021/Acs.Jproteome.9B00478 |
0.041 |
|
| 2018 |
Jagtap PK, Tapadia K. Pharmacokinetic determination and analysis of nortriptyline based on GC-MS coupled with hollow-fiber drop-to-drop solvent microextraction technique. Bioanalysis. 10: 143-152. PMID 29333862 DOI: 10.4155/bio-2017-0207 |
0.041 |
|
| 2021 |
Rajczewski AT, Mehta S, Nguyen DDA, Grüning BA, Johnson JE, McGowan T, Griffin TJ, Jagtap PD. A rigorous evaluation of optimal peptide targets for MS-based clinical diagnostics of Coronavirus Disease 2019 (COVID-19). Medrxiv : the Preprint Server For Health Sciences. PMID 33688669 DOI: 10.1101/2021.02.09.21251427 |
0.041 |
|
| 2017 |
Sonntag M, Jagtap P, Simon B, Appavou MS, Geerlof A, Stehle R, Gabel F, Hennig J, Sattler M. Segmental, domain-selective perdeuteration and small angle neutron scattering for structural analysis of multi-domain proteins. Angewandte Chemie (International Ed. in English). PMID 28636238 DOI: 10.1002/anie.201702904 |
0.041 |
|
| 2017 |
Krafczyk R, Macošek J, Jagtap PKA, Gast D, Wunder S, Mitra P, Jha AK, Rohr J, Hoffmann-Röder A, Jung K, Hennig J, Lassak J. Structural Basis for EarP-Mediated Arginine Glycosylation of Translation Elongation Factor EF-P. Mbio. 8. PMID 28951478 DOI: 10.1128/Mbio.01412-17 |
0.04 |
|
| 2005 |
Farivar AS, McCourtie AS, MacKinnon-Patterson BC, Woolley SM, Barnes AD, Chen M, Jagtap P, Szabó C, Salerno CT, Mulligan MS. Poly (ADP) ribose polymerase inhibition improves rat cardiac allograft survival. The Annals of Thoracic Surgery. 80: 950-6. PMID 16122462 DOI: 10.1016/J.Athoracsur.2005.02.035 |
0.04 |
|
| 2014 |
Bhargava M, Becker TL, Viken KJ, Jagtap PD, Dey S, Steinbach MS, Wu B, Kumar V, Bitterman PB, Ingbar DH, Wendt CH. Proteomic profiles in acute respiratory distress syndrome differentiates survivors from non-survivors. Plos One. 9: e109713. PMID 25290099 DOI: 10.1371/Journal.Pone.0109713 |
0.04 |
|
| 2020 |
Kumar P, Johnson JE, Easterly C, Mehta S, Sajulga R, Nunn B, Jagtap PD, Griffin TJ. A sectioning and database enrichment approach for improved peptide spectrum matching in large, genome-guided protein sequence databases. Journal of Proteome Research. PMID 32396365 DOI: 10.1021/Acs.Jproteome.0C00260 |
0.04 |
|
| 2020 |
McGowan T, Johnson JE, Kumar P, Sajulga R, Mehta S, Jagtap PD, Griffin TJ. Multi-omics Visualization Platform: An extensible Galaxy plug-in for multi-omics data visualization and exploration. Gigascience. 9. PMID 32236523 DOI: 10.1093/Gigascience/Giaa025 |
0.039 |
|
| 2020 |
Hollmann NM, Jagtap PKA, Masiewicz P, Guitart T, Simon B, Provaznik J, Stein F, Haberkant P, Sweetapple LJ, Villacorta L, Mooijman D, Benes V, Savitski MM, Gebauer F, Hennig J. Pseudo-RNA-Binding Domains Mediate RNA Structure Specificity in Upstream of N-Ras. Cell Reports. 32: 107930. PMID 32697992 DOI: 10.1016/j.celrep.2020.107930 |
0.038 |
|
| 2014 |
Wang I, Hennig J, Jagtap PK, Sonntag M, Valcárcel J, Sattler M. Structure, dynamics and RNA binding of the multi-domain splicing factor TIA-1. Nucleic Acids Research. 42: 5949-66. PMID 24682828 DOI: 10.1093/nar/gku193 |
0.038 |
|
| 2018 |
Afiuni-Zadeh S, Boylan KLM, Jagtap PD, Griffin TJ, Rudney JD, Peterson ML, Skubitz APN. Evaluating the potential of residual Pap test fluid as a resource for the metaproteomic analysis of the cervical-vaginal microbiome. Scientific Reports. 8: 10868. PMID 30022083 DOI: 10.1038/S41598-018-29092-4 |
0.037 |
|
| 2019 |
Gautam M, Kaur M, Jagtap P, Krayem B. Levomilnacipran: More of the Same? The Primary Care Companion For Cns Disorders. 21. PMID 31509357 DOI: 10.4088/PCC.19nr02475 |
0.037 |
|
| 2002 |
Faro R, Toyoda Y, McCully JD, Jagtap P, Szabo E, Virag L, Bianchi C, Levitsky S, Szabo C, Sellke FW. Myocardial protection by PJ34, a novel potent poly (ADP-ribose) synthetase inhibitor. The Annals of Thoracic Surgery. 73: 575-81. PMID 11845877 DOI: 10.1016/S0003-4975(01)03329-X |
0.037 |
|
| 2011 |
Kooren JA, Rhodus NL, Tang C, Jagtap PD, Horrigan BJ, Griffin TJ. Evaluating the potential of a novel oral lesion exudate collection method coupled with mass spectrometry-based proteomics for oral cancer biomarker discovery. Clinical Proteomics. 8: 13. PMID 21914210 DOI: 10.1186/1559-0275-8-13 |
0.036 |
|
| 2020 |
Jagtap P, Johnson J, Yang T, Fahrner M, Schilling O, Searle B, Griffin T. Exploring chromatogram library-based data-independent acquisition analysis using EncyclopeDIA within Galaxy framework. F1000research. 9. DOI: 10.7490/F1000Research.1118254.1 |
0.035 |
|
| 2016 |
McGowan T, Johnson J, Jagtap P, Onsongo G, Guerrero C, Griffin T. A multi-omics visualization platform (MVP) plug-in for Galaxy-based applications F1000research. 5. DOI: 10.7490/F1000Research.1112723.1 |
0.035 |
|
| 2005 |
Degterev A, Huang Z, Boyce M, Li Y, Jagtap P, Mizushima N, Cuny GD, Mitchison TJ, Moskowitz MA, Yuan J. Chemical inhibitor of nonapoptotic cell death with therapeutic potential for ischemic brain injury. Nature Chemical Biology. 1: 112-9. PMID 16408008 DOI: 10.1038/Nchembio711 |
0.034 |
|
| 2009 |
Keshamouni VG, Jagtap P, Michailidis G, Strahler JR, Kuick R, Reka AK, Papoulias P, Krishnapuram R, Srirangam A, Standiford TJ, Andrews PC, Omenn GS. Temporal quantitative proteomics by iTRAQ 2D-LC-MS/MS and corresponding mRNA expression analysis identify post-transcriptional modulation of actin-cytoskeleton regulators during TGF-beta-Induced epithelial-mesenchymal transition. Journal of Proteome Research. 8: 35-47. PMID 19118450 DOI: 10.1021/Pr8006478 |
0.034 |
|
| 2016 |
Jagtap PK, Garg D, Kapp TG, Will CL, Demmer O, Luhrmann R, Kessler H, Sattler M. Rational design of cyclic peptide inhibitors of U2AF homology motif (UHM) domains to modulate pre-mRNA splicing. Journal of Medicinal Chemistry. PMID 27753493 DOI: 10.1021/acs.jmedchem.6b01118 |
0.032 |
|
| 2017 |
Bhargava M, Viken K, Wang Q, Jagtap P, Bitterman P, Ingbar D, Wendt C. Bronchoalveolar Lavage Fluid Protein Expression in Acute Respiratory Distress Syndrome Provides Insights into Pathways Activated in Subjects with Different Outcomes. Scientific Reports. 7: 7464. PMID 28785034 DOI: 10.1038/S41598-017-07791-8 |
0.031 |
|
| 2020 |
Baidya F, Bohra M, Datta A, Sarmah D, Shah B, Jagtap P, Raut S, Sarkar A, Singh U, Kalia K, Borah A, Wang X, Dave KR, Yavagal DR, Bhattacharya P. Neuroimmune Cross Talk and Evolving Pharmacotherapies in Neurodegenerative Diseases. Immunology. PMID 32939758 DOI: 10.1111/imm.13264 |
0.031 |
|
| 2004 |
Jagtap PG, Chen Z, Szabó C, Klotz KN. 2-(N-acyl) and 2-N-acyl-N(6)-substituted analogues of adenosine and their affinity at the human adenosine receptors. Bioorganic & Medicinal Chemistry Letters. 14: 1495-8. PMID 15006389 DOI: 10.1016/J.Bmcl.2004.01.011 |
0.03 |
|
| 2016 |
Jagtap P, Diwadkar VA. Effective connectivity of ascending and descending frontalthalamic pathways during sustained attention: Complex brain network interactions in adolescence. Human Brain Mapping. PMID 27145923 DOI: 10.1002/hbm.23196 |
0.03 |
|
| 2016 |
Jagtap P, Johnson J, McGowan T, Onsongo I, Lynch B, Guerrero C, Murray K, Smith LM, Shortreed MR, Cesnick A, Martens L, Hegeman A, Griffin T. Recent developments and new directions for the Galaxy-P project F1000research. 5. DOI: 10.7490/F1000Research.1112724.1 |
0.029 |
|
| 2020 |
Mische SM, Fisher NC, Meyn SM, Church KS, Hegstad-Davies RL, Weis-Garcia F, Adams M, Ashton JM, Delventhal KM, Dragon JA, Holmes L, Jagtap P, Mason CE, Palmblad M, Searle BC, et al. A Review of the Scientific Rigor, Reproducibility, and Transparency Studies Conducted by the ABRF Research Groups. Journal of Biomolecular Techniques : Jbt. PMID 31969795 DOI: 10.7171/Jbt.20-3101-003 |
0.027 |
|
| 2010 |
Stone MD, Odland RM, McGowan T, Onsongo G, Tang C, Rhodus NL, Jagtap P, Bandhakavi S, Griffin TJ. Novel In Situ Collection of Tumor Interstitial Fluid from a Head and Neck Squamous Carcinoma Reveals a Unique Proteome with Diagnostic Potential. Clinical Proteomics. 6: 75-82. PMID 20930922 DOI: 10.1007/S12014-010-9050-3 |
0.026 |
|
| 2014 |
Jagtap P, Shetty G, Mane P, Shetty V. Emerging intra-articular causes of groin pain in athletes European Journal of Orthopaedic Surgery and Traumatology. 24: 1331-1339. PMID 24101188 DOI: 10.1007/s00590-013-1325-8 |
0.026 |
|
| 2018 |
Hoskote SS, Yadav H, Jagtap P, Wigle DA, Daniels CE. Chylothorax as a Risk Factor for Thrombosis in Adults: A Proof-of-Concept Study. The Annals of Thoracic Surgery. PMID 29452999 DOI: 10.1016/j.athoracsur.2017.11.011 |
0.025 |
|
| 1999 |
Jagtap P, Ray MK. Studies on the cytoplasmic protein tyrosine kinase activity of the Antarctic psychrotrophic bacterium Pseudomonas syringae. Fems Microbiology Letters. 173: 379-88. PMID 10227168 DOI: 10.1111/J.1574-6968.1999.TB13529.X |
0.024 |
|
| 2014 |
Piccoli G, Onofri F, Cirnaru MD, Kaiser CJ, Jagtap P, Kastenmüller A, Pischedda F, Marte A, von Zweydorf F, Vogt A, Giesert F, Pan L, Antonucci F, Kiel C, Zhang M, et al. Leucine-rich repeat kinase 2 binds to neuronal vesicles through protein interactions mediated by its C-terminal WD40 domain. Molecular and Cellular Biology. 34: 2147-61. PMID 24687852 DOI: 10.1128/Mcb.00914-13 |
0.024 |
|
| 2015 |
Sandri B, Limper A, Jagtap P, Avdulov S, Peterson M, Yang P, Larsson O, Murie C, Bitterman P, Griffin T, Higgins L, Markowski T, Wendt C. Large-scale quantitative proteomic analysis identifies pathways in COPD-associated lung cancer European Respiratory Journal. DOI: 10.1183/13993003.Congress-2015.Pa4270 |
0.023 |
|
| 2016 |
Guaitoli G, Raimondi F, Gilsbach BK, Gómez-Llorente Y, Deyaert E, Renzi F, Li X, Schaffner A, Jagtap PK, Boldt K, von Zweydorf F, Gotthardt K, Lorimer DD, Yue Z, Burgin A, et al. Structural model of the dimeric Parkinson's protein LRRK2 reveals a compact architecture involving distant interdomain contacts. Proceedings of the National Academy of Sciences of the United States of America. PMID 27357661 DOI: 10.1073/Pnas.1523708113 |
0.023 |
|
| 2020 |
Jagtap PKA, Kubelka T, Soni K, Will CL, Garg D, Sippel C, Kapp TG, Potukuchi HK, Schorpp K, Hadian K, Kessler H, Lührmann R, Hausch F, Bach T, Sattler M. Identification of phenothiazine derivatives as UHM-binding inhibitors of early spliceosome assembly. Nature Communications. 11: 5621. PMID 33159082 DOI: 10.1038/s41467-020-19514-1 |
0.022 |
|
| 2020 |
Mehta S, McGowan T, Johnson JE, Kumar P, Sajulga R, Arntzen M, Delogu F, Crane M, Thuy-Boun PS, Wolan DW, Griffin TJ, Jagtap PD. Evaluating customized database generation methods for metaproteomics analysis. F1000research. 9. DOI: 10.7490/F1000Research.1118252.1 |
0.022 |
|
| 2012 |
Jagtap PK, Soni V, Vithani N, Jhingan GD, Bais VS, Nandicoori VK, Prakash B. Substrate-bound crystal structures reveal features unique to Mycobacterium tuberculosis N-acetyl-glucosamine 1-phosphate uridyltransferase and a catalytic mechanism for acetyl transfer. The Journal of Biological Chemistry. 287: 39524-37. PMID 22969087 DOI: 10.1074/jbc.M112.390765 |
0.021 |
|
| 1998 |
Ray MK, Kumar GS, Janiyani K, Kannan K, Jagtap P, Basu MK, Shivaji S. Adaptation to low temperature and regulation of gene expression in antarctic psychrotrophic bacteria Journal of Biosciences. 23: 423-435. DOI: 10.1007/BF02936136 |
0.02 |
|
| 2001 |
Tankhiwale SS, Jagtap PM, Khadse RK, Jalgaonkar SV. Bacteriological study of pyogenic meningitis with special reference to C-reactive protein. Indian Journal of Medical Microbiology. 19: 159-60. PMID 17664824 |
0.02 |
|
| 2018 |
Jagtap P, Mishra R, Khanna S, Kumari P, Mittal B, Kashyap HK, Gupta S. Mechanistic evaluation of lipopolysaccharide-alexidine interaction using spectroscopic and in silico approaches. Acs Infectious Diseases. PMID 30226750 DOI: 10.1021/Acsinfecdis.8B00087 |
0.019 |
|
| 2018 |
Jagtap P, Shetty R, Agarwalla A, Wani P, Bhargava K, Martande S. Comparative Evaluation of Cytotoxicity of Root Canal Sealers on Cultured Human Periodontal Fibroblasts: In vitro Study. The Journal of Contemporary Dental Practice. 19: 847-852. PMID 30066690 |
0.017 |
|
| 2016 |
Anderson KJ, Vermillion KL, Jagtap P, Johnson JE, Griffin TJ, Andrews MT. Proteogenomic analysis of a hibernating mammal indicates contribution of skeletal muscle physiology to the hibernation phenotype. Journal of Proteome Research. PMID 26903422 DOI: 10.1021/Acs.Jproteome.5B01138 |
0.017 |
|
| 2014 |
Shetty VD, Dhillon M, Hegde C, Jagtap P, Shetty S. A study to compare the efficacy of corticosteroid therapy with platelet-rich plasma therapy in recalcitrant plantar fasciitis: a preliminary report. Foot and Ankle Surgery : Official Journal of the European Society of Foot and Ankle Surgeons. 20: 10-3. PMID 24480492 DOI: 10.1016/j.fas.2013.08.002 |
0.017 |
|
| 2021 |
Thuy-Boun PS, Mehta S, Gruening B, McGowan T, Nguyen A, Rajczewski AT, Johnson JE, Griffin TJ, Wolan DW, Jagtap PD. Metaproteomics Analysis of SARS-CoV-2-Infected Patient Samples Reveals Presence of Potential Coinfecting Microorganisms. Journal of Proteome Research. PMID 33393790 DOI: 10.1021/acs.jproteome.0c00822 |
0.017 |
|
| 2020 |
Sarmah D, Datta A, Raut S, Sarkar A, Shah B, Bohra M, Singh U, Jagtap P, Baidya F, Kalia K, Wang X, Dave KR, Yavagal DR, Bhattacharya P. Role of Inflammasomes in Atherosclerosis and Stroke Pathogenesis. Current Pharmaceutical Design. PMID 32338208 DOI: 10.2174/1381612826666200427084949 |
0.015 |
|
| 2020 |
Shah B, Jagtap P, Sarmah D, Datta A, Raut S, Sarkar A, Bohra M, Singh U, Baidya F, Kalia K, Borah A, Dave KR, Yavagal DR, Bhattacharya P. Cerebro-Renal Interaction and Stroke. The European Journal of Neuroscience. PMID 32979852 DOI: 10.1111/ejn.14983 |
0.015 |
|
| 2018 |
Kumar P, Griffin T, Jagtap P, Johnson J, Mehta S, Easterly C, Sajulga R, Rajczewski A, Heydarian M, Krishanpal A, Panigrahi P. Proteo-transcriptomics workflow exploring correlation between the expression of RNA and proteins F1000research. 7. DOI: 10.7490/F1000Research.1115859.1 |
0.013 |
|
| 2015 |
Jagtap P, Griffin T, Armengaud J. Microbiomes - Embracing complexity. Proteomics. 15: 3405-6. PMID 26468045 DOI: 10.1002/Pmic.201570183 |
0.012 |
|
| 2019 |
Batut B, Hiltemann S, Rasche H, Mehta S, Jagtap P, Kumar P, Griffin T, Clements D, Grüning B. Galaxy and Training: 2019 updates from the Galaxy Training Network F1000research. 8. DOI: 10.7490/F1000Research.1117108.1 |
0.012 |
|
| 2020 |
Regmi MR, Tandan N, Parajuli P, Maini R, Lara Garcia OE, Jagtap P, Kulkarni A. Extracorporeal membranous oxygenation for a severe case of vaping associated lung injury. Pulmonology. PMID 32507701 DOI: 10.1016/j.pulmoe.2020.05.008 |
0.01 |
|
| 2020 |
Raut S, Singh U, Sarmah D, Datta A, Baidya F, Shah B, Bohra M, Jagtap P, Sarkar A, Kalia K, Borah A, Dave KR, Yavagal DR, Bhattacharya P. Migraine and Ischemic Stroke: Deciphering the Bidirectional Pathway. Acs Chemical Neuroscience. PMID 32348103 DOI: 10.1021/acschemneuro.0c00137 |
0.01 |
|
| 2018 |
Jagtap PD, Viken KJ, Johnson J, McGowan T, Pendleton KM, Griffin TJ, Hunter RC, Rudney JD, Bhargava M. BAL Fluid Metaproteome in Acute Respiratory Failure. American Journal of Respiratory Cell and Molecular Biology. 59: 648-652. PMID 30382775 DOI: 10.1165/Rcmb.2018-0068Le |
0.01 |
|
| 2018 |
Mehta S, Easterly C, Johnson JE, Gruening B, Argentini A, Millikin RJ, Shortreed MR, McGowan T, Kumar P, Martens L, Smith LM, Griffin TJ, Jagtap P. Evaluation of moFF and FlashLFQ for label free peptide quantification in proteomic workflows within Galaxy-P framework. F1000research. 7. DOI: 10.7490/F1000Research.1115792.1 |
0.01 |
|
| 2017 |
Kaul U, Bhagwat A, Pinto B, Goel PK, Jagtap P, Sathe S, Wander GS, Arambam P, Bangalore S. Paclitaxel-Eluting Stents versus Everolimus-Eluting Coronary Stents in a Diabetic Population: 2 Years Follow-up of TUXEDO-India Trial. Eurointervention : Journal of Europcr in Collaboration With the Working Group On Interventional Cardiology of the European Society of Cardiology. PMID 28741578 DOI: 10.4244/EIJ-D-17-00333 |
0.01 |
|
| 2017 |
Griffin TJ, Chambers MC, Johnson JE, McGowan T, Doak TG, Fischer J, Kumar P, Jagtap P. Multi-omic informatics in the cloud: Galaxy-P takes a ride on Jetstream F1000research. 6. DOI: 10.7490/F1000Research.1114538.1 |
0.01 |
|
| 2016 |
Bangalore S, Bhagwat A, Pinto B, Goel PK, Jagtap P, Sathe S, Arambam P, Kaul U. Percutaneous Coronary Intervention in Patients With Insulin-Treated and Non-Insulin-Treated Diabetes Mellitus: Secondary Analysis of the TUXEDO Trial. Jama Cardiology. 1: 266-73. PMID 27438104 DOI: 10.1001/jamacardio.2016.0305 |
0.01 |
|
| 2016 |
Bhargava M, Viken KJ, Dey S, Steinbach MS, Wu B, Jagtap PD, Higgins L, Panoskaltsis-Mortari A, Weisdorf DJ, Kumar V, Arora M, Bitterman PB, Ingbar DH, Wendt CH. Proteome Profiling in Lung Injury Following Hematopoietic Stem Cell Transplantation. Biology of Blood and Marrow Transplantation : Journal of the American Society For Blood and Marrow Transplantation. PMID 27155584 DOI: 10.1016/J.Bbmt.2016.04.021 |
0.01 |
|
| 2011 |
Mahoney DW, Therneau TM, Heppelmann CJ, Higgins L, Benson LM, Zenka RM, Jagtap P, Nelsestuen GL, Bergen HR, Oberg AL. Relative quantification: characterization of bias, variability and fold changes in mass spectrometry data from iTRAQ-labeled peptides. Journal of Proteome Research. 10: 4325-33. PMID 21755926 DOI: 10.1021/Pr2001308 |
0.01 |
|
| 2004 |
Rendulic S, Jagtap P, Rosinus A, Eppinger M, Baar C, Lanz C, Keller H, Lambert C, Evans KJ, Goesmann A, Meyer F, Sockett RE, Schuster SC. A predator unmasked: life cycle of Bdellovibrio bacteriovorus from a genomic perspective. Science (New York, N.Y.). 303: 689-92. PMID 14752164 DOI: 10.1126/science.1093027 |
0.01 |
|
| 2003 |
Agrawal G, Jalgaonkar SV, Jagtap PM, Kamlakar UP, Deogade NG. Emergence and re-emergence of Vibrio cholerae 0139: an epidemiological study during 1993-2002 at Nagpur, Central India. Indian Journal of Medical Sciences. 57: 155-7. PMID 14510347 |
0.01 |
|
| 2003 |
Baar C, Eppinger M, Raddatz G, Simon J, Lanz C, Klimmek O, Nandakumar R, Gross R, Rosinus A, Keller H, Jagtap P, Linke B, Meyer F, Lederer H, Schuster SC. Complete genome sequence and analysis of Wolinella succinogenes Proceedings of the National Academy of Sciences of the United States of America. 100: 11690-11695. PMID 14500908 DOI: 10.1073/pnas.1932838100 |
0.01 |
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