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Kathleen M. Jagodnik - Publications

Affiliations: 
2005-2010 Biomedical Engineering Case Western Reserve University, Cleveland Heights, OH, United States 
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8/46 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Thomas P, Branicky M, van den Bogert A, Jagodnik K. Application of the Actor-Critic Architecture to Functional Electrical Stimulation Control of a Human Arm. Proceedings of the ... Innovative Applications of Artificial Intelligence Conference. Innovative Applications of Artificial Intelligence Conference. 2009: 165-172. PMID 20689654  0.612
2018 Torre D, Krawczuk P, Jagodnik KM, Lachmann A, Wang Z, Wang L, Kuleshov MV, Ma'ayan A. Datasets2Tools, repository and search engine for bioinformatics datasets, tools and canned analyses. Scientific Data. 5: 180023. PMID 29485625 DOI: 10.1038/Sdata.2018.23  0.31
2017 Jagodnik K, Thomas P, van den Bogert A, Branicky M, Kirsch R. Training an Actor-Critic Reinforcement Learning Controller for Arm Movement Using Human-Generated Rewards. Ieee Transactions On Neural Systems and Rehabilitation Engineering : a Publication of the Ieee Engineering in Medicine and Biology Society. PMID 28475063 DOI: 10.1109/Tnsre.2017.2700395  0.674
2016 Kuleshov MV, Jones MR, Rouillard AD, Fernandez NF, Duan Q, Wang Z, Koplev S, Jenkins SL, Jagodnik KM, Lachmann A, McDermott MG, Monteiro CD, Gundersen GW, Ma'ayan A. Enrichr: a comprehensive gene set enrichment analysis web server 2016 update. Nucleic Acids Research. PMID 27141961 DOI: 10.1093/Nar/Gkw377  0.307
2016 Jagodnik KM, Thomas PS, van den Bogert AJ, Branicky MS, Kirsch RF. Human-Like Rewards to Train a Reinforcement Learning Controller for Planar Arm Movement Ieee Transactions On Human-Machine Systems. DOI: 10.1109/Thms.2016.2558630  0.651
2015 Jagodnik KM, Blana D, van den Bogert AJ, Kirsch RF. An optimized proportional-derivative controller for the human upper extremity with gravity. Journal of Biomechanics. 48: 3701-3709. PMID 26358531 DOI: 10.1016/J.Jbiomech.2015.08.016  0.577
2010 Jagodnik KM, van den Bogert AJ. Optimization and evaluation of a proportional derivative controller for planar arm movement. Journal of Biomechanics. 43: 1086-91. PMID 20097345 DOI: 10.1016/j.jbiomech.2009.12.017  0.652
2008 Thomas PS, Branicky M, van den Bogert A, Jagodnik K. Creating a Reinforcement Learning Controller for Functional Electrical Stimulation of a Human Arm. The ... Yale Workshop On Adaptive and Learning Systems. 49326: 1-6. PMID 22081795  0.586
Low-probability matches (unlikely to be authored by this person)
2020 Bartal A, Lachmann A, Clarke DJB, Seiden AH, Jagodnik KM, Ma'ayan A. EnrichrBot: Twitter Bot Tracking Tweets About Human Genes. Bioinformatics (Oxford, England). PMID 32277816 DOI: 10.1093/Bioinformatics/Btaa240  0.293
2017 Koleti A, Terryn R, Stathias V, Chung C, Cooper DJ, Turner JP, Vidovic D, Forlin M, Kelley TT, D'Urso A, Allen BK, Torre D, Jagodnik KM, Wang L, Jenkins SL, et al. Data Portal for the Library of Integrated Network-based Cellular Signatures (LINCS) program: integrated access to diverse large-scale cellular perturbation response data. Nucleic Acids Research. PMID 29140462 DOI: 10.1093/Nar/Gkx1063  0.292
2016 Wang Z, Monteiro CD, Jagodnik KM, Fernandez NF, Gundersen GW, Rouillard AD, Jenkins SL, Feldmann AS, Hu KS, McDermott MG, Duan Q, Clark NR, Jones MR, Kou Y, Goff T, et al. Extraction and analysis of signatures from the Gene Expression Omnibus by the crowd. Nature Communications. 7: 12846. PMID 27667448 DOI: 10.7490/F1000Research.1113422.1  0.291
2019 Keenan AB, Torre D, Lachmann A, Leong AK, Wojciechowicz ML, Utti V, Jagodnik KM, Kropiwnicki E, Wang Z, Ma'ayan A. ChEA3: transcription factor enrichment analysis by orthogonal omics integration. Nucleic Acids Research. PMID 31114921 DOI: 10.1093/Nar/Gkz446  0.287
2018 Stathias V, Koleti A, Vidović D, Cooper DJ, Jagodnik KM, Terryn R, Forlin M, Chung C, Torre D, Ayad N, Medvedovic M, Ma'ayan A, Pillai A, Schürer SC. Sustainable data and metadata management at the BD2K-LINCS Data Coordination and Integration Center. Scientific Data. 5: 180117. PMID 29917015 DOI: 10.1038/Sdata.2018.117  0.287
2018 Lachmann A, Torre D, Keenan AB, Jagodnik KM, Lee HJ, Wang L, Silverstein MC, Ma'ayan A. Massive mining of publicly available RNA-seq data from human and mouse. Nature Communications. 9: 1366. PMID 29636450 DOI: 10.1038/S41467-018-03751-6  0.281
2018 Wang Z, He E, Sani K, Jagodnik KM, Silverstein M, Ma'ayan A. Drug Gene Budger (DGB): An application for ranking drugs to modulate a specific gene based on transcriptomic signatures. Bioinformatics (Oxford, England). PMID 30169739 DOI: 10.1093/Bioinformatics/Bty763  0.275
2019 Clarke DJB, Wang L, Jones A, Wojciechowicz ML, Torre D, Jagodnik KM, Jenkins SL, McQuilton P, Flamholz Z, Silverstein MC, Schilder BM, Robasky K, Castillo C, Idaszak R, Ahalt SC, et al. FAIRshake: Toolkit to Evaluate the FAIRness of Research Digital Resources. Cell Systems. PMID 31677972 DOI: 10.1016/J.Cels.2019.09.011  0.266
2018 Keenan AB, Jenkins SL, Jagodnik KM, Koplev S, He E, Torre D, Wang Z, Dohlman AB, Silverstein MC, Lachmann A, Kuleshov MV, Ma'ayan A, Stathias V, Terryn R, Cooper D, et al. The Library of Integrated Network-Based Cellular Signatures NIH Program: System-Level Cataloging of Human Cells Response to Perturbations. Cell Systems. 6: 13-24. PMID 29199020 DOI: 10.1016/J.Cels.2017.11.001  0.266
2016 Gundersen GW, Jagodnik KM, Woodland H, Fernandez NF, Sani K, Dohlman AB, Ung PM, Monteiro CD, Schlessinger A, Ma'ayan A. GEN3VA: aggregation and analysis of gene expression signatures from related studies. Bmc Bioinformatics. 17: 461. PMID 27846806 DOI: 10.1186/S12859-016-1321-1  0.264
2017 Jagodnik KM, Koplev S, Jenkins S, Ohno-Machado L, Paten B, Schurer SC, Dumontier M, Verborgh R, Bui A, Ping P, McKenna NJ, Madduri R, Pillai A, Ma'ayan A. Developing a Framework for Digital Objects in the Big Data to Knowledge (BD2K) Commons: Report from the Commons Framework Pilots Workshop. Journal of Biomedical Informatics. PMID 28501646 DOI: 10.1016/J.Jbi.2017.05.006  0.261
2016 Gundersen GW, Jagodnik KM, Woodland H, Fernandez NF, Sani K, Dohlman AB, Ung PM, Monteiro CD, Schlessinger A, Ma'ayan A. GEN3VA: aggregation and analysis of gene expression signatures from related studies F1000research. 5. DOI: 10.7490/F1000Research.1113433.1  0.225
2022 Evangelista JE, Clarke DJB, Xie Z, Lachmann A, Jeon M, Chen K, Jagodnik KM, Jenkins SL, Kuleshov MV, Wojciechowicz ML, Schürer SC, Medvedovic M, Ma'ayan A. SigCom LINCS: data and metadata search engine for a million gene expression signatures. Nucleic Acids Research. PMID 35524556 DOI: 10.1093/nar/gkac328  0.176
2021 Clarke DJB, Jeon M, Stein DJ, Moiseyev N, Kropiwnicki E, Dai C, Xie Z, Wojciechowicz ML, Litz S, Hom J, Evangelista JE, Goldman L, Zhang S, Yoon C, Ahamed T, ... ... Jagodnik KM, et al. Appyters: Turning Jupyter Notebooks into data-driven web apps. Patterns (New York, N.Y.). 2: 100213. PMID 33748796 DOI: 10.1016/j.patter.2021.100213  0.169
2021 Kropiwnicki E, Evangelista JE, Stein DJ, Clarke DJB, Lachmann A, Kuleshov MV, Jeon M, Jagodnik KM, Ma'ayan A. Drugmonizome and Drugmonizome-ML: integration and abstraction of small molecule attributes for drug enrichment analysis and machine learning. Database : the Journal of Biological Databases and Curation. 2021. PMID 33787872 DOI: 10.1093/database/baab017  0.157
2022 Xie Z, Kropiwnicki E, Wojciechowicz ML, Jagodnik KM, Shu I, Bailey A, Clarke DJB, Jeon M, Evangelista JE, V Kuleshov M, Lachmann A, Parigi AA, Sanchez JM, Jenkins SL, Ma'ayan A. Getting Started with LINCS Datasets and Tools. Current Protocols. 2: e487. PMID 35876555 DOI: 10.1002/cpz1.487  0.152
2021 Xie Z, Bailey A, Kuleshov MV, Clarke DJB, Evangelista JE, Jenkins SL, Lachmann A, Wojciechowicz ML, Kropiwnicki E, Jagodnik KM, Jeon M, Ma'ayan A. Gene Set Knowledge Discovery with Enrichr. Current Protocols. 1: e90. PMID 33780170 DOI: 10.1002/cpz1.90  0.149
2019 Keenan AB, Wojciechowicz ML, Wang Z, Jagodnik KM, Jenkins SL, Lachmann A, Ma'ayan A. Connectivity Mapping: Methods and Applications Annual Review of Biomedical Data Science. 2: 69-92. DOI: 10.1146/ANNUREV-BIODATASCI-072018-021211  0.127
2020 Kuleshov MV, Clarke DJB, Kropiwnicki E, Jagodnik KM, Bartal A, Evangelista JE, Zhou A, Ferguson LB, Lachmann A, Ma'ayan A. The COVID-19 Gene and Drug Set Library. Research Square. PMID 32702729 DOI: 10.21203/rs.3.rs-28582/v1  0.126
2024 Bartal A, Jagodnik KM, Chan SJ, Dekel S. AI and narrative embeddings detect PTSD following childbirth via birth stories. Scientific Reports. 14: 8336. PMID 38605073 DOI: 10.1038/s41598-024-54242-2  0.12
2024 Jagodnik KM, Dekel S, Bartal A. Persistence of collective memory of corporate bankruptcy events discussed on X (Twitter) is influenced by pre-bankruptcy public attention. Scientific Reports. 14: 6552. PMID 38503803 DOI: 10.1038/s41598-024-53758-x  0.12
2023 Jagodnik KM, Shvili Y, Bartal A. HetIG-PreDiG: A Heterogeneous Integrated Graph Model for Predicting Human Disease Genes based on gene expression. Plos One. 18: e0280839. PMID 36791052 DOI: 10.1371/journal.pone.0280839  0.114
2020 Kuleshov MV, Stein DJ, Clarke DJB, Kropiwnicki E, Jagodnik KM, Bartal A, Evangelista JE, Hom J, Cheng M, Bailey A, Zhou A, Ferguson LB, Lachmann A, Ma'ayan A. The COVID-19 Drug and Gene Set Library. Patterns (New York, N.Y.). 100090. PMID 32838343 DOI: 10.1016/j.patter.2020.100090  0.107
2021 Jeon M, Jagodnik KM, Kropiwnicki E, Stein DJ, Ma'ayan A. Prioritizing Pain-Associated Targets with Machine Learning. Biochemistry. PMID 33606503 DOI: 10.1021/acs.biochem.0c00930  0.104
2023 Bartal A, Jagodnik KM, Chan SJ, Dekel S. ChatGPT Demonstrates Potential for Identifying Psychiatric Disorders: Application to Childbirth-Related Post-Traumatic Stress Disorder. Research Square. PMID 37886525 DOI: 10.21203/rs.3.rs-3428787/v1  0.103
2022 Kropiwnicki E, Lachmann A, Clarke DJB, Xie Z, Jagodnik KM, Ma'ayan A. DrugShot: querying biomedical search terms to retrieve prioritized lists of small molecules. Bmc Bioinformatics. 23: 76. PMID 35183110 DOI: 10.1186/s12859-022-04590-5  0.098
2021 Bartal A, Jagodnik KM. Role-Aware Information Spread in Online Social Networks. Entropy (Basel, Switzerland). 23. PMID 34828240 DOI: 10.3390/e23111542  0.077
2024 Zaretsky TG, Jagodnik KM, Barsic R, Antonio JH, Bonanno PA, MacLeod C, Pierce C, Carney H, Morrison MT, Saylor C, Danias G, Lepow L, Yehuda R. The Psychedelic Future of Post-Traumatic Stress Disorder Treatment. Current Neuropharmacology. 22: 636-735. PMID 38284341 DOI: 10.2174/1570159X22666231027111147  0.068
2022 Bartal A, Jagodnik KM, Chan MSJ, Babu MMS, Dekel S. Identifying Women with Post-Delivery Posttraumatic Stress Disorder using Natural Language Processing of Personal Childbirth Narratives. American Journal of Obstetrics & Gynecology Mfm. 100834. PMID 36509356 DOI: 10.1016/j.ajogmf.2022.100834  0.061
2022 Bartal A, Jagodnik KM, Chan SJ, Babu MS, Dekel S. Identifying Women with Post-Delivery Posttraumatic Stress Disorder using Natural Language Processing of Personal Childbirth Narratives. Medrxiv : the Preprint Server For Health Sciences. PMID 36093354 DOI: 10.1101/2022.08.30.22279394  0.061
2023 Dekel S, Papadakis JE, Quagliarini B, Jagodnik KM, Nandru R. A Systematic Review of Interventions for Prevention and Treatment of Post-Traumatic Stress Disorder Following Childbirth. Medrxiv : the Preprint Server For Health Sciences. PMID 37693410 DOI: 10.1101/2023.08.17.23294230  0.056
2022 Bartal A, Jagodnik KM. Progress in and Opportunities for Applying Information Theory to Computational Biology and Bioinformatics. Entropy (Basel, Switzerland). 24. PMID 35885148 DOI: 10.3390/e24070925  0.052
2023 Marino GB, Ahmed N, Xie Z, Jagodnik KM, Han J, Clarke DJB, Lachmann A, Keller MP, Attie AD, Ma'ayan A. D2H2: diabetes data and hypothesis hub. Bioinformatics Advances. 3: vbad178. PMID 38107655 DOI: 10.1093/bioadv/vbad178  0.051
2023 Hantsoo L, Jagodnik KM, Novick AM, Baweja R, di Scalea TL, Ozerdem A, McGlade EC, Simeonova DI, Dekel S, Kornfield SL, Nazareth M, Weiss SJ. The role of the hypothalamic-pituitary-adrenal axis in depression across the female reproductive lifecycle: current knowledge and future directions. Frontiers in Endocrinology. 14: 1295261. PMID 38149098 DOI: 10.3389/fendo.2023.1295261  0.043
2023 Jagodnik KM, Ein-Dor T, Chan SJ, Ashkenazy AT, Bartal A, Dekel S. Screening for Post-Traumatic Stress Disorder following Childbirth using the Peritraumatic Distress Inventory. Medrxiv : the Preprint Server For Health Sciences. PMID 37162947 DOI: 10.1101/2023.04.23.23288976  0.041
2023 Arora IH, Woscoboinik GG, Mokhtar S, Quagliarini B, Bartal A, Jagodnik KM, Barry RL, Edlow AG, Orr SP, Dekel S. Establishing the Validity of a Diagnostic Questionnaire for Childbirth-related Post-traumatic Stress Disorder. American Journal of Obstetrics and Gynecology. PMID 37981091 DOI: 10.1016/j.ajog.2023.11.1229  0.037
2023 Dekel S, Papadakis JE, Quagliarini B, Pham CT, Pacheco-Barrios K, Hughes F, Jagodnik KM, Nandru R. Preventing posttraumatic stress disorder following childbirth: a systematic review and meta-analysis. American Journal of Obstetrics and Gynecology. PMID 38122842 DOI: 10.1016/j.ajog.2023.12.013  0.037
2023 Jagodnik KM, Ein-Dor T, Chan SJ, Ashkenazy AT, Bartal A, Barry RL, Dekel S. Screening for post-traumatic stress disorder following childbirth using the Peritraumatic Distress Inventory. Journal of Affective Disorders. PMID 38070747 DOI: 10.1016/j.jad.2023.12.010  0.036
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