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Ratna Rajesh Thangudu - Publications

Affiliations: 
National Center for Biotechnology Information National Institute of Health, Bethesda, MD, United States 
 2006 Universite de La Reunion, France 
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11 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2014 Suzuki K, Hori A, Kawamoto K, Thangudu RR, Ishida T, Igarashi K, Samejima M, Yamada C, Arakawa T, Wakagi T, Koseki T, Fushinobu S. Crystal structure of a feruloyl esterase belonging to the tannase family: a disulfide bond near a catalytic triad. Proteins. 82: 2857-67. PMID 25066066 DOI: 10.1002/Prot.24649  0.465
2013 Li M, Shoemaker BA, Thangudu RR, Ferraris JD, Burg MB, Panchenko AR. Mutations in DNA-binding loop of NFAT5 transcription factor produce unique outcomes on protein-DNA binding and dynamics. The Journal of Physical Chemistry. B. 117: 13226-34. PMID 23734591 DOI: 10.1021/Jp403310A  0.305
2012 Tyagi M, Thangudu RR, Zhang D, Bryant SH, Madej T, Panchenko AR. Homology inference of protein-protein interactions via conserved binding sites. Plos One. 7: e28896. PMID 22303436 DOI: 10.1371/Journal.Pone.0028896  0.766
2012 Thangudu RR, Bryant SH, Panchenko AR, Madej T. Modulating protein-protein interactions with small molecules: the importance of binding hotspots. Journal of Molecular Biology. 415: 443-53. PMID 22198293 DOI: 10.1016/J.Jmb.2011.12.026  0.627
2012 Shoemaker BA, Zhang D, Tyagi M, Thangudu RR, Fong JH, Marchler-Bauer A, Bryant SH, Madej T, Panchenko AR. IBIS (Inferred Biomolecular Interaction Server) reports, predicts and integrates multiple types of conserved interactions for proteins. Nucleic Acids Research. 40: D834-40. PMID 22102591 DOI: 10.1093/Nar/Gkr997  0.746
2010 Thangudu RR, Tyagi M, Shoemaker BA, Bryant SH, Panchenko AR, Madej T. Knowledge-based annotation of small molecule binding sites in proteins. Bmc Bioinformatics. 11: 365. PMID 20594344 DOI: 10.1186/1471-2105-11-365  0.722
2010 Shoemaker BA, Zhang D, Thangudu RR, Tyagi M, Fong JH, Marchler-Bauer A, Bryant SH, Madej T, Panchenko AR. Inferred Biomolecular Interaction Server--a web server to analyze and predict protein interacting partners and binding sites. Nucleic Acids Research. 38: D518-24. PMID 19843613 DOI: 10.1093/Nar/Gkp842  0.75
2010 Tyagi M, Thangudu RR, Shoemaker BA, Bryant SH, Madej T, Panchenko AR. Inferring protein-protein interactions based on conservation of interfaces in homologs F1000research. 1. DOI: 10.7490/F1000Research.254.1  0.741
2008 Thangudu RR, Manoharan M, Srinivasan N, Cadet F, Sowdhamini R, Offmann B. Analysis on conservation of disulphide bonds and their structural features in homologous protein domain families. Bmc Structural Biology. 8: 55. PMID 19111067 DOI: 10.1186/1472-6807-8-55  0.604
2007 Thangudu RR, Sharma P, Srinivasan N, Offmann B. Analycys: a database for conservation and conformation of disulphide bonds in homologous protein domains. Proteins. 67: 255-61. PMID 17285632 DOI: 10.1002/Prot.21318  0.738
2005 Thangudu RR, Vinayagam A, Pugalenthi G, Manonmani A, Offmann B, Sowdhamini R. Native and modeled disulfide bonds in proteins: knowledge-based approaches toward structure prediction of disulfide-rich polypeptides Proteins. 58: 866-879. PMID 15645448 DOI: 10.1002/Prot.20369  0.708
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