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Junshi Yazaki - Publications

Affiliations: 
Staff Scientist, RIKEN 
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Year Citation  Score
2023 Yazaki J, Dal-Bianco M. In Situ Protein Microarray for Identifying the Geminivirus-Arabidopsis Interactome. Methods in Molecular Biology (Clifton, N.J.). 2724: 307-314. PMID 37987915 DOI: 10.1007/978-1-0716-3485-1_22  0.492
2021 Gouveia-Mageste BC, Martins LGC, Dal-Bianco M, Machado JPB, da Silva JCF, Kim AY, Yazaki J, Dos Santos AA, Ecker JR, Fontes EPB. A plant-specific syntaxin-6 protein contributes to the intracytoplasmic route for the begomovirus CabLCV. Plant Physiology. 187: 158-173. PMID 34618135 DOI: 10.1093/plphys/kiab252  0.633
2020 Yazaki J. Novel Protein-oligonucleotide Conjugation Method Involving a High-affinity Capture HaloTag. Bio-Protocol. 10: e3759. PMID 33659418 DOI: 10.21769/BioProtoc.3759  0.418
2019 Yazaki J, Kawashima Y, Ogawa T, Kobayashi A, Okoshi M, Watanabe T, Yoshida S, Kii I, Egami S, Amagai M, Hosoya T, Shiroguchi K, Ohara O. HaloTag-based conjugation of proteins to barcoding-oligonucleotides. Nucleic Acids Research. PMID 31752022 DOI: 10.1093/nar/gkz1086  0.369
2018 Yazaki J, Galli M, Kim AY, Ecker JR. Profiling Interactome Networks with the HaloTag-NAPPA In Situ Protein Array. Current Protocols in Plant Biology. e20071. PMID 30106517 DOI: 10.1002/cppb.20071  0.741
2016 Aleman F, Yazaki J, Lee M, Takahashi Y, Kim AY, Li Z, Kinoshita T, Ecker JR, Schroeder JI. An ABA-increased interaction of the PYL6 ABA receptor with MYC2 Transcription Factor: A putative link of ABA and JA signaling. Scientific Reports. 6: 28941. PMID 27357749 DOI: 10.1038/Srep28941  0.56
2016 Yazaki J, Galli M, Kim AY, Nito K, Aleman F, Chang KN, Carvunis AR, Quan R, Nguyen H, Song L, Alvarez JM, Huang SC, Chen H, Ramachandran N, Altmann S, et al. Mapping transcription factor interactome networks using HaloTag protein arrays. Proceedings of the National Academy of Sciences of the United States of America. PMID 27357687 DOI: 10.1073/Pnas.1603229113  0.672
2010 She KC, Kusano H, Koizumi K, Yamakawa H, Hakata M, Imamura T, Fukuda M, Naito N, Tsurumaki Y, Yaeshima M, Tsuge T, Matsumoto K, Kudoh M, Itoh E, Kikuchi S, ... ... Yazaki J, et al. A novel factor FLOURY ENDOSPERM2 is involved in regulation of rice grain size and starch quality. The Plant Cell. 22: 3280-94. PMID 20889913 DOI: 10.1105/tpc.109.070821  0.32
2009 Qiao H, Chang KN, Yazaki J, Ecker JR. Interplay between ethylene, ETP1/ETP2 F-box proteins, and degradation of EIN2 triggers ethylene responses in Arabidopsis Genes and Development. 23: 512-521. PMID 19196655 DOI: 10.1101/Gad.1765709  0.739
2009 Cusick ME, Yu H, Smolyar A, Venkatesan K, Carvunis AR, Simonis N, Rual JF, Borick H, Braun P, Dreze M, Vandenhaute J, Galli M, Yazaki J, Hill DE, Ecker JR, et al. Literature-curated protein interaction datasets. Nature Methods. 6: 39-46. PMID 19116613 DOI: 10.1038/Nmeth.1284  0.738
2009 Cusick ME, Yu H, Smolyar A, Venkatesan K, Carvunis A, Simonis N, Rual J, Borick H, Braun P, Dreze M, Vandenhaute J, Galli M, Yazaki J, Hill DE, Ecker JR, et al. Addendum: Literature-curated protein interaction datasets Nature Methods. 6: 934-935. DOI: 10.1038/Nmeth1209-934  0.733
2008 Gregory BD, Yazaki J, Ecker JR. Utilizing tiling microarrays for whole-genome analysis in plants Plant Journal. 53: 636-644. PMID 18269573 DOI: 10.1111/J.1365-313X.2007.03320.X  0.636
2007 Chekanova JA, Gregory BD, Reverdatto SV, Chen H, Kumar R, Hooker T, Yazaki J, Li P, Skiba N, Peng Q, Alonso J, Brukhin V, Grossniklaus U, Ecker JR, Belostotsky DA. Genome-Wide High-Resolution Mapping of Exosome Substrates Reveals Hidden Features in the Arabidopsis Transcriptome Cell. 131: 1340-1353. PMID 18160042 DOI: 10.1016/J.Cell.2007.10.056  0.673
2007 Yazaki J, Gregory BD, Ecker JR. Mapping the genome landscape using tiling array technology Current Opinion in Plant Biology. 10: 534-542. PMID 17703988 DOI: 10.1016/J.Pbi.2007.07.006  0.656
2006 Zhang X, Yazaki J, Sundaresan A, Cokus S, Chan SW, Chen H, Henderson IR, Shinn P, Pellegrini M, Jacobsen SE, Ecker JR. Genome-wide high-resolution mapping and functional analysis of DNA methylation in arabidopsis. Cell. 126: 1189-201. PMID 16949657 DOI: 10.1016/J.Cell.2006.08.003  0.641
2005 Yazaki J, Kikuchi S. The genomic view of genes responsive to the antagonistic phytohormones, abscisic acid, and gibberellin. Vitamins and Hormones. 72: 1-30. PMID 16492467 DOI: 10.1016/S0083-6729(05)72001-X  0.369
2003 Kikuchi S, Satoh K, Nagata T, Kawagashira N, Doi K, Kishimoto N, Yazaki J, Ishikawa M, Yamada H, Ooka H, Hotta I, Kojima K, Namiki T, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science (New York, N.Y.). 301: 376-9. PMID 12869764 DOI: 10.1126/Science.1081288  0.387
2003 Otsuki S, Ikeda A, Sunako T, Muto S, Yazaki J, Nakamura K, Fujii F, Shimbo K, Otsuka Y, Yamamoto K, Sakata K, Sasaki T, Kishimoto N, Kikuchi S, Yamaguchi J. Novel gene encoding a Ca2+-binding protein and under hexokinase-dependent sugar regulation. Bioscience, Biotechnology, and Biochemistry. 67: 347-53. PMID 12728997 DOI: 10.1271/bbb.67.347  0.3
1998 Joh T, Tasaki Y, Yazaki J, Hayakawa T. Electrophoretic analysis of soluble proteins specifically synthesized under phosphate deficiency in the mycelia of Pholiota nameko Mycoscience. 39: 195-198. DOI: 10.1007/BF02464059  0.359
Low-probability matches (unlikely to be authored by this person)
2004 Yazaki J, Kojima K, Suzuki K, Kishimoto N, Kikuchi S. The Rice PIPELINE: a unification tool for plant functional genomics. Nucleic Acids Research. 32: D383-7. PMID 14681439 DOI: 10.1093/nar/gkh001  0.251
2004 Sugimoto H, Kusumi K, Tozawa Y, Yazaki J, Kishimoto N, Kikuchi S, Iba K. The virescent-2 mutation inhibits translation of plastid transcripts for the plastid genetic system at an early stage of chloroplast differentiation Plant and Cell Physiology. 45: 985-996. PMID 15356324  0.245
2002 Demura T, Tashiro G, Horiguchi G, Kishimoto N, Kubo M, Matsuoka N, Minami A, Nagata-Hiwatashi M, Nakamura K, Okamura Y, Sassa N, Suzuki S, Yazaki J, Kikuchi S, Fukuda H. Visualization by comprehensive microarray analysis of gene expression programs during transdifferentiation of mesophyll cells into xylem cells. Proceedings of the National Academy of Sciences of the United States of America. 99: 15794-9. PMID 12438691 DOI: 10.1073/pnas.232590499  0.228
2001 Yazaki J, Kishimoto N, Nakamura K, Fujii F, Shimbo K, Otsuka Y, Wu J, Yamamoto K, Sakata K, Sasaki T, Kikuchi S. Embarking on rice functional genomics via cDNA microarray: use of 3' UTR probes for specific gene expression analysis. Dna Research : An International Journal For Rapid Publication of Reports On Genes and Genomes. 7: 367-70. PMID 11214972 DOI: 10.1093/DNARES/7.6.367  0.226
2004 Yazaki J, Shimatani Z, Hashimoto A, Nagata Y, Fujii F, Kojima K, Suzuki K, Taya T, Tonouchi M, Nelson C, Nakagawa A, Otomo Y, Murakami K, Matsubara K, Kawai J, et al. Transcriptional profiling of genes responsive to abscisic acid and gibberellin in rice: phenotyping and comparative analysis between rice and Arabidopsis. Physiological Genomics. 17: 87-100. PMID 14982972 DOI: 10.1152/Physiolgenomics.00201.2003  0.221
2002 Yazaki J, Kishimoto N, Ishikawa M, Kikuchi S. Rice Expression Database: the gateway to rice functional genomics Trends in Plant Science. 7: 563-564. DOI: 10.1016/S1360-1385(02)02377-4  0.219
2003 Yazaki J, Kishimoto N, Nagata Y, Ishikawa M, Fujii F, Hashimoto A, Shimbo K, Shimatani Z, Kojima K, Suzuki K, Yamamoto M, Honda S, Endo A, Yoshida Y, Sato Y, et al. Genomics approach to abscisic acid- and gibberellin-responsive genes in rice. Dna Research : An International Journal For Rapid Publication of Reports On Genes and Genomes. 10: 249-61. PMID 15029956 DOI: 10.1093/Dnares/10.6.249  0.205
2004 Yang GX, Jan A, Shen SH, Yazaki J, Ishikawa M, Shimatani Z, Kishimoto N, Kikuchi S, Matsumoto H, Komatsu S. Microarray analysis of brassinosteroids- and gibberellin-regulated gene expression in rice seedlings. Molecular Genetics and Genomics : Mgg. 271: 468-78. PMID 15029491 DOI: 10.1007/s00438-004-0998-4  0.201
2003 Akimoto-Tomiyama C, Sakata K, Yazaki J, Nakamura K, Fujii F, Shimbo K, Yamamoto K, Sasaki T, Kishimoto N, Kikuchi S, Shibuya N, Minami E. Rice gene expression in response to N-acetylchitooligosaccharide elicitor: comprehensive analysis by DNA microarray with randomly selected ESTs. Plant Molecular Biology. 52: 537-51. PMID 12956525 DOI: 10.1023/a:1024890601888  0.198
2004 Ohkama-Ohtsu N, Kishimoto N, Yazaki J, Fujii F, Shinbo K, Shimatani Z, Nagata Y, Hashimoto A, Ohta T, Sato Y, Honda S, Yamamoto K, Sakata K, Sasaki T, Kikuchi S, et al. Upregulation of the genes for ferritin, RNase, and DnaJ in leaves of rice plants in response to sulfur deficiency Soil Science and Plant Nutrition. 50: 771-775. DOI: 10.1080/00380768.2004.10408534  0.195
2013 Nakamura T, Yazaki J, Kishimoto N, Kikuchi S, Robertson AJ, Gusta LV, Ishikawa M. Comparison of long-term up-regulated genes during induction of freezing tolerance by cold and ABA in bromegrass cell cultures revealed by microarray analyses Plant Growth Regulation. 71: 113-136. DOI: 10.1007/S10725-013-9812-9  0.181
2003 Shimono M, Yazaki J, Nakamura K, Kishimoto N, Kikuchi S, Iwano M, Yamamoto K, Sakata K, Sasaki T, Nishiguchi M. cDNA microarray analysis of gene expression in rice plants treated with probenazole, a chemical inducer of disease resistance Journal of General Plant Pathology. 69: 76-82. DOI: 10.1007/s10327-002-0010-2  0.166
2004 Yamaguchi T, Nakayama K, Hayashi T, Yazaki J, Kishimoto N, Kikuchi S, Koike S. cDNA microarray analysis of rice anther genes under chilling stress at the microsporogenesis stage revealed two genes with DNA transposon Castaway in the 5'-flanking region. Bioscience, Biotechnology, and Biochemistry. 68: 1315-23. PMID 15215597 DOI: 10.1271/bbb.68.1315  0.164
2006 Kitanaga Y, Jian C, Hasegawa M, Yazaki J, Kishimoto N, Kikuchi S, Nakamura H, Ichikawa H, Asami T, Yoshida S, Yamaguchi I, Suzuki Y. Sequential regulation of gibberellin, brassinosteroid, and jasmonic acid biosynthesis occurs in rice coleoptiles to control the transcript levels of anti-microbial thionin genes. Bioscience, Biotechnology, and Biochemistry. 70: 2410-9. PMID 17031029 DOI: 10.1271/bbb.60145  0.163
2009 Yamada-Akiyama H, Akiyama Y, Ebina M, Xu Q, Tsuruta S, Yazaki J, Kishimoto N, Kikuchi S, Takahara M, Takamizo T, Sugita S, Nakagawa H. Analysis of expressed sequence tags in apomictic guineagrass (Panicum maximum). Journal of Plant Physiology. 166: 750-61. PMID 19046615 DOI: 10.1016/j.jplph.2008.10.001  0.159
2003 WASAKI J, YONETANI R, KURODA S, SHINANO T, YAZAKI J, FUJII F, SHIMBO K, YAMAMOTO K, SAKATA K, SASAKI T, KISHIMOTO N, KIKUCHI S, YAMAGISHI M, OSAKI M. Transcriptomic analysis of metabolic changes by phosphorus stress in rice plant roots Plant, Cell & Environment. 26: 1515-1523. DOI: 10.1046/J.1365-3040.2003.01074.X  0.157
2006 Tasaki Y, Azwan A, Yazaki J, Hara T, Joh T. Structure and expression of two genes encoding secreted acid phosphatases under phosphate-deficient conditions in Pholiota nameko strain N2. Current Genetics. 49: 323-32. PMID 16453113 DOI: 10.1007/s00294-006-0058-1  0.141
2006 Suzuki M, Takahashi M, Tsukamoto T, Watanabe S, Matsuhashi S, Yazaki J, Kishimoto N, Kikuchi S, Nakanishi H, Mori S, Nishizawa NK. Biosynthesis and secretion of mugineic acid family phytosiderophores in zinc-deficient barley. The Plant Journal : For Cell and Molecular Biology. 48: 85-97. PMID 16972867 DOI: 10.1111/j.1365-313X.2006.02853.x  0.136
2004 Watanabe S, Shimoi E, Ohkama N, Hayashi H, Yoneyama T, Yazaki J, Fujii F, Shinbo K, Yamamoto K, Sakata K, Sasaki T, Kishimoto N, Kikuchi S, Fujiwara T. Identification of several rice genes regulated by Si nutrition Soil Science and Plant Nutrition. 50: 1273-1276. DOI: 10.1080/00380768.2004.10408603  0.135
2002 Negishi T, Nakanishi H, Yazaki J, Kishimoto N, Fujii F, Shimbo K, Yamamoto K, Sakata K, Sasaki T, Kikuchi S, Mori S, Nishizawa NK. cDNA microarray analysis of gene expression during Fe-deficiency stress in barley suggests that polar transport of vesicles is implicated in phytosiderophore secretion in Fe-deficient barley roots. The Plant Journal : For Cell and Molecular Biology. 30: 83-94. PMID 11967095 DOI: 10.1046/j.1365-313x.2002.01270.x  0.13
2005 Shimada T, Fuiii H, Endo T, Yazaki J, Kishimoto N, Shimbo K, Kikuchi S, Omura M. Toward comprehensive expression profiling by microarray analysis in citrus: Monitoring the expression profiles of 2213 genes during fruit development Plant Science. 168: 1383-1385. DOI: 10.1016/j.plantsci.2005.01.013  0.129
2002 DAY RB, AKIMOTO-TOMIYAMA C, YAZAKI J, NAKAMURA K, FUJII F, SHIMBO K, YAMAMOTO K, SAKATA K, SASAKI T, KISHIMOTO N, KIKUCHI S, SHIBUYA N, MINAMI E. Large-Scale Identification of Elicitor-Responsive Genes in Suspension -Cultured Rice Cells by DNA Microarray. Plant Biotechnology. 19: 153-155. DOI: 10.5511/PLANTBIOTECHNOLOGY.19.153  0.128
2006 Wasaki J, Shinano T, Onishi K, Yonetani R, Yazaki J, Fujii F, Shimbo K, Ishikawa M, Shimatani Z, Nagata Y, Hashimoto A, Ohta T, Sato Y, Miyamoto C, Honda S, et al. Transcriptomic analysis indicates putative metabolic changes caused by manipulation of phosphorus availability in rice leaves. Journal of Experimental Botany. 57: 2049-59. PMID 16720613 DOI: 10.1093/jxb/erj158  0.122
2005 Takahashi S, Ishimaru K, Yazaki J, Fujii F, Shimbo K, Yamamoto K, Sakata K, Sasaki T, Kishimoto N, Kikuchi S. Microarray Analysis of Sink-Source Transition in Rice Leaf Sheaths Breeding Science. 55: 153-162. DOI: 10.1270/JSBBS.55.153  0.112
2006 TAGUCHI-SHIOBARA F, YAZAKI J, ISHIKAWA M, FUJII F, SHIMBO K, SHIMATANI Z, NAGATA Y, HASHIMOTO A, OHTA T, SATO Y, HONDA S, YAMAMOTO K, SAKATA K, SASAKI T, KISHIMOTO N, et al. A Microarray Analysis of Rice Near-Isogenic Lines that Cover QTLs Associated with Callus Proliferation Japan Agricultural Research Quarterly: Jarq. 40: 243-249. DOI: 10.6090/JARQ.40.243  0.097
2023 Nemoto S, Kubota T, Ishikura T, Nakayama M, Kobayashi A, Yazaki J, Uchida K, Matsuda M, Kondo T, Ohara O, Koseki H, Koyasu S, Ohno H. Characterization of metabolic phenotypes and distinctive genes in mice with low-weight gain. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 38: e23339. PMID 38069905 DOI: 10.1096/fj.202301565R  0.096
2023 Sekita A, Kawasaki H, Fukushima-Nomura A, Yashiro K, Tanese K, Toshima S, Ashizaki K, Miyai T, Yazaki J, Kobayashi A, Namba S, Naito T, Wang QS, Kawakami E, Seita J, et al. Multifaceted analysis of cross-tissue transcriptomes reveals phenotype-endotype associations in atopic dermatitis. Nature Communications. 14: 6133. PMID 37783685 DOI: 10.1038/s41467-023-41857-8  0.093
1999 Joh T, Yazaki J, Suzuki K, Hayakawa T. Isolation and properties of glucose-1-phosphatase from mycelia of Pholiota nameko. Bioscience, Biotechnology, and Biochemistry. 62: 2251-3. PMID 9972248 DOI: 10.1271/BBB.62.2251  0.058
1996 Joh T, Malick DH, Yazaki J, Hayakawa T. Purification and characterization of secreted acid phosphatase under phosphate-deficient condition in Pholiota nameko Mycoscience. 37: 65-70. DOI: 10.1007/BF02461459  0.056
2023 Takeuchi T, Kubota T, Nakanishi Y, Tsugawa H, Suda W, Kwon AT, Yazaki J, Ikeda K, Nemoto S, Mochizuki Y, Kitami T, Yugi K, Mizuno Y, Yamamichi N, Yamazaki T, et al. Gut microbial carbohydrate metabolism contributes to insulin resistance. Nature. PMID 37648852 DOI: 10.1038/s41586-023-06466-x  0.04
1997 Yazaki J, Joh T, Tomida S, Hayakawa T. Acid phosphatase isozymes secreted under phosphatedeficient conditions in Pholiota nameko Mycoscience. 38: 347-350. DOI: 10.1007/BF02464095  0.037
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