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Stefan Fischer - Publications

Affiliations: 
Ruprecht-Karls-University Heidelberg, Heidelberg, Baden-Württemberg, Germany 
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33 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2017 Hassan HA, Rani S, Fatima T, Kiani FA, Fischer S. Effect of protonation on the mechanism of phosphate monoester hydrolysis and comparison with the hydrolysis of nucleoside triphosphate in biomolecular motors. Biophysical Chemistry. PMID 28941815 DOI: 10.1016/j.bpc.2017.08.003  0.31
2016 Kiani FA, Fischer S. Comparing the catalytic strategy of ATP hydrolysis in biomolecular motors. Physical Chemistry Chemical Physics : Pccp. PMID 27296627 DOI: 10.1039/c6cp01364c  0.319
2015 Wolter T, Elstner M, Fischer S, Smith JC, Bondar AN. Mechanism by which untwisting of retinal leads to productive bacteriorhodopsin photocycle states. The Journal of Physical Chemistry. B. 119: 2229-40. PMID 25196390 DOI: 10.1021/Jp505818R  0.664
2011 Fischer S, Olsen KW, Nam K, Karplus M. Unsuspected pathway of the allosteric transition in hemoglobin. Proceedings of the National Academy of Sciences of the United States of America. 108: 5608-13. PMID 21415366 DOI: 10.1073/Pnas.1011995108  0.423
2011 Bondar AN, Fischer S, Smith JC. Water pathways in the bacteriorhodopsin proton pump. The Journal of Membrane Biology. 239: 73-84. PMID 21113780 DOI: 10.1007/S00232-010-9329-3  0.685
2009 Imhof P, Fischer S, Smith JC. Catalytic mechanism of DNA backbone cleavage by the restriction enzyme EcoRV: a quantum mechanical/molecular mechanical analysis. Biochemistry. 48: 9061-75. PMID 19678693 DOI: 10.1021/Bi900585M  0.48
2009 Pfisterer C, Gruia A, Fischer S. The mechanism of photo-energy storage in the Halorhodopsin chloride pump. The Journal of Biological Chemistry. 284: 13562-13569. PMID 19211559 DOI: 10.1074/jbc.M808787200  0.324
2008 Bondar AN, Baudry J, Suhai S, Fischer S, Smith JC. Key role of active-site water molecules in bacteriorhodopsin proton-transfer reactions. The Journal of Physical Chemistry. B. 112: 14729-41. PMID 18973373 DOI: 10.1021/Jp801916F  0.705
2007 Koppole S, Smith JC, Fischer S. The structural coupling between ATPase activation and recovery stroke in the myosin II motor. Structure (London, England : 1993). 15: 825-37. PMID 17637343 DOI: 10.1016/J.Str.2007.06.008  0.388
2007 Friedman R, Fischer S, Nachliel E, Scheiner S, Gutman M. Minimum energy pathways for proton transfer between adjacent sites exposed to water. The Journal of Physical Chemistry. B. 111: 6059-70. PMID 17488114 DOI: 10.1021/Jp070781R  0.393
2007 Gräter F, Schwarzl SM, Dejaegere A, Fischer S, Smith JC. Protein/ligand binding free energies calculated with quantum mechanics/molecular mechanics. The Journal of Physical Chemistry. B. 109: 10474-83. PMID 16852269 DOI: 10.1021/Jp044185Y  0.413
2006 Imhof P, Noé F, Fischer S, Smith JC. AM1/d Parameters for Magnesium in Metalloenzymes. Journal of Chemical Theory and Computation. 2: 1050-6. PMID 26633065 DOI: 10.1021/Ct600092C  0.329
2006 Noé F, Krachtus D, Smith JC, Fischer S. Transition Networks for the Comprehensive Characterization of Complex Conformational Change in Proteins. Journal of Chemical Theory and Computation. 2: 840-57. PMID 26626691 DOI: 10.1021/Ct050162R  0.442
2006 Mesentean S, Koppole S, Smith JC, Fischer S. The principal motions involved in the coupling mechanism of the recovery stroke of the myosin motor. Journal of Molecular Biology. 367: 591-602. PMID 17275022 DOI: 10.1016/J.Jmb.2006.12.058  0.376
2006 Bondar AN, Suhai S, Fischer S, Smith JC, Elstner M. Suppression of the back proton-transfer from Asp85 to the retinal Schiff base in bacteriorhodopsin: a theoretical analysis of structural elements. Journal of Structural Biology. 157: 454-69. PMID 17189704 DOI: 10.1016/J.Jsb.2006.10.007  0.702
2006 Koppole S, Smith JC, Fischer S. Simulations of the myosin II motor reveal a nucleotide-state sensing element that controls the recovery stroke. Journal of Molecular Biology. 361: 604-16. PMID 16859703 DOI: 10.1016/J.Jmb.2006.06.022  0.399
2006 Bondar AN, Smith JC, Fischer S. Structural and energetic determinants of primary proton transfer in bacteriorhodopsin. Photochemical & Photobiological Sciences : Official Journal of the European Photochemistry Association and the European Society For Photobiology. 5: 547-52. PMID 16761083 DOI: 10.1039/B516451F  0.691
2006 Schwarzl SM, Smith JC, Fischer S. Insights into the chemomechanical coupling of the myosin motor from simulation of its ATP hydrolysis mechanism. Biochemistry. 45: 5830-47. PMID 16669626 DOI: 10.1021/Bi052433Q  0.464
2006 Mesentean S, Fischer S, Smith JC. Analyzing large-scale structural change in proteins: comparison of principal component projection and Sammon mapping. Proteins. 64: 210-8. PMID 16617427 DOI: 10.1002/Prot.20981  0.378
2005 Bondar AN, Fischer S, Suhai S, Smith JC. Tuning of retinal twisting in bacteriorhodopsin controls the directionality of the early photocycle steps. The Journal of Physical Chemistry. B. 109: 14786-8. PMID 16852870 DOI: 10.1021/Jp0531255  0.688
2005 Schwarzl SM, Huang D, Smith JC, Fischer S. Nonuniform charge scaling (NUCS): a practical approximation of solvent electrostatic screening in proteins. Journal of Computational Chemistry. 26: 1359-71. PMID 16021598 DOI: 10.1002/Jcc.20274  0.45
2005 Fischer S, Windshügel B, Horak D, Holmes KC, Smith JC. Structural mechanism of the recovery stroke in the myosin molecular motor. Proceedings of the National Academy of Sciences of the United States of America. 102: 6873-8. PMID 15863618 DOI: 10.1073/Pnas.0408784102  0.379
2005 Gruia AD, Bondar AN, Smith JC, Fischer S. Mechanism of a molecular valve in the halorhodopsin chloride pump. Structure (London, England : 1993). 13: 617-27. PMID 15837200 DOI: 10.1016/J.Str.2005.01.021  0.656
2005 Noé F, Ille F, Smith JC, Fischer S. Automated computation of low-energy pathways for complex rearrangements in proteins: application to the conformational switch of Ras p21. Proteins. 59: 534-44. PMID 15778967 DOI: 10.1002/Prot.20422  0.472
2005 Bondar AN, Elstner M, Suhai S, Smith JC, Fischer S. Mechanism of primary proton transfer in bacteriorhodopsin. Structure (London, England : 1993). 12: 1281-8. PMID 15242604 DOI: 10.1016/J.Str.2004.04.016  0.68
2004 Bondar AN, Fischer S, Smith JC, Elstner M, Suhai S. Key role of electrostatic interactions in bacteriorhodopsin proton transfer. Journal of the American Chemical Society. 126: 14668-77. PMID 15521787 DOI: 10.1021/Ja047982I  0.708
2004 Smith JC, Merzel F, Bondar AN, Tournier A, Fischer S, Kornyshev A, Daniel RM, Halle B, Wilson K. Structure, dynamics and reactions of protein hydration water Philosophical Transactions of the Royal Society B: Biological Sciences. 359: 1181-1190. PMID 15306375 DOI: 10.1098/Rstb.2004.1497  0.648
2003 Noé F, Schwarzl SM, Fischer S, Smith JC. Computational tools for analysing structural changes in proteins in solution. Applied Bioinformatics. 2: S11-7. PMID 15130811  0.425
2003 Schwarzl SM, Huang D, Smith JC, Fischer S. How well does charge reparametrisation account for solvent screening in molecular mechanics calculations? The example of myosin. In Silico Biology. 3: 187-96. PMID 12762854  0.461
2003 Gruia AD, Fischer S, Smith JC. Molecular dynamics simulation reveals a surface salt bridge forming a kinetic trap in unfolding of truncated Staphylococcal nuclease. Proteins. 50: 507-15. PMID 12557192 DOI: 10.1002/Prot.10312  0.42
2003 Tournier AL, Huang D, Schwarzl SM, Fischer S, Smith JC. Time-resolved computational protein biochemistry: solvent effects on interactions, conformational transitions and equilibrium fluctuations. Faraday Discussions. 122: 243-51; discussion 2. PMID 12555861 DOI: 10.1039/B201191C  0.444
2002 Dutzler R, Schirmer T, Karplus M, Fischer S. Translocation mechanism of long sugar chains across the maltoporin membrane channel. Structure (London, England : 1993). 10: 1273-84. PMID 12220498 DOI: 10.1016/S0969-2126(02)00811-0  0.442
2002 Schwarzl SM, Tschopp TB, Smith JC, Fischer S. Can the calculation of ligand binding free energies be improved with continuum solvent electrostatics and an ideal-gas entropy correction? Journal of Computational Chemistry. 23: 1143-9. PMID 12116383 DOI: 10.1002/Jcc.10112  0.385
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