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Chiara Pallara - Publications

Affiliations: 
2010-2016 Barcelona Supercomputing Center, Barcelona, Catalunya, Spain 
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13 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Ordan M, Pallara C, Maik-Rachline G, Hanoch T, Gervasio FL, Glaser F, Fernandez-Recio J, Seger R. Intrinsically active MEK variants are differentially regulated by proteinases and phosphatases. Scientific Reports. 8: 11830. PMID 30087384 DOI: 10.1038/S41598-018-30202-5  0.575
2017 Barradas-Bautista D, Rosell M, Pallara C, Fernández-Recio J. Structural Prediction of Protein-Protein Interactions by Docking: Application to Biomedical Problems. Advances in Protein Chemistry and Structural Biology. 110: 203-249. PMID 29412997 DOI: 10.1016/bs.apcsb.2017.06.003  0.809
2017 Romero-Durana M, Pallara C, Glaser F, Fernández-Recio J. Modeling Binding Affinity of Pathological Mutations for Computational Protein Design. Methods in Molecular Biology (Clifton, N.J.). 1529: 139-159. PMID 27914049 DOI: 10.1007/978-1-4939-6637-0_6  0.82
2016 Pallara C, Jiménez-García B, Romero M, Moal IH, Fernández-Recio J. pyDock scoring for the new modeling challenges in docking: Protein-peptide, homo-multimers, and domain-domain interactions. Proteins. 85: 487-496. PMID 27701776 DOI: 10.1002/prot.25184  0.811
2016 Pallara C, Rueda M, Abagyan R, Fernández-Recio J. Conformational Heterogeneity of Unbound Proteins Enhances Recognition in Protein-Protein Encounters. Journal of Chemical Theory and Computation. 12: 3236-49. PMID 27294484 DOI: 10.1021/Acs.Jctc.6B00204  0.785
2016 Lensink MF, Velankar S, Kryshtafovych A, Huang SY, Schneidman-Duhovny D, Sali A, Segura J, Fernandez-Fuentes N, Viswanath S, Elber R, Grudinin S, Popov P, Neveu E, Lee H, Baek M, ... ... Pallara C, et al. Prediction of homo- and hetero-protein complexes by protein docking and template-based modeling: a CASP-CAPRI experiment. Proteins. PMID 27122118 DOI: 10.1002/Prot.25007  0.801
2015 Bernal-Bayard P, Pallara C, Carmen Castell M, Molina-Heredia FP, Fernández-Recio J, Hervás M, Navarro JA. Interaction of photosystem I from Phaeodactylum tricornutum with plastocyanins as compared with its native cytochrome c6: Reunion with a lost donor. Biochimica Et Biophysica Acta. 1847: 1549-59. PMID 26407632 DOI: 10.1016/j.bbabio.2015.09.006  0.509
2014 Lucas M, Gaspar AH, Pallara C, Rojas AL, Fernández-Recio J, Machner MP, Hierro A. Structural basis for the recruitment and activation of the Legionella phospholipase VipD by the host GTPase Rab5. Proceedings of the National Academy of Sciences of the United States of America. 111: E3514-23. PMID 25114243 DOI: 10.1073/Pnas.1405391111  0.655
2014 Lang V, Pallara C, Zabala A, Lobato-Gil S, Lopitz-Otsoa F, Farrás R, Hjerpe R, Torres-Ramos M, Zabaleta L, Blattner C, Hay RT, Barrio R, Carracedo A, Fernandez-Recio J, Rodríguez MS, et al. Tetramerization-defects of p53 result in aberrant ubiquitylation and transcriptional activity. Molecular Oncology. 8: 1026-42. PMID 24816189 DOI: 10.1016/j.molonc.2014.04.002  0.53
2014 Lensink MF, Moal IH, Bates PA, Kastritis PL, Melquiond AS, Karaca E, Schmitz C, van Dijk M, Bonvin AM, Eisenstein M, Jiménez-García B, Grosdidier S, Solernou A, Pérez-Cano L, Pallara C, et al. Blind prediction of interfacial water positions in CAPRI. Proteins. 82: 620-32. PMID 24155158 DOI: 10.1002/Prot.24439  0.712
2013 Pallara C, Jiménez-García B, Pérez-Cano L, Romero-Durana M, Solernou A, Grosdidier S, Pons C, Moal IH, Fernandez-Recio J. Expanding the frontiers of protein-protein modeling: from docking and scoring to binding affinity predictions and other challenges. Proteins. 81: 2192-200. PMID 23934865 DOI: 10.1002/prot.24387  0.66
2013 Moretti R, Fleishman SJ, Agius R, Torchala M, Bates PA, Kastritis PL, Rodrigues JP, Trellet M, Bonvin AM, Cui M, Rooman M, Gillis D, Dehouck Y, Moal I, Romero-Durana M, ... ... Pallara C, et al. Community-wide evaluation of methods for predicting the effect of mutations on protein-protein interactions. Proteins. 81: 1980-7. PMID 23843247 DOI: 10.1002/Prot.24356  0.753
2013 Chen Y, Tascón I, Neunuebel MR, Pallara C, Brady J, Kinch LN, Fernández-Recio J, Rojas AL, Machner MP, Hierro A. Structural basis for Rab1 de-AMPylation by the Legionella pneumophila effector SidD. Plos Pathogens. 9: e1003382. PMID 23696742 DOI: 10.1371/Journal.Ppat.1003382  0.647
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