Richard D. Smith
Affiliations: | 2010 | University of Michigan, Ann Arbor, Ann Arbor, MI |
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Parents
Sign in to add mentor| Heather A. Carlson | grad student | 2010 | University of Michigan | |
| (Biophysical properties of small molecules binding to proteins.) | ||||
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Publications
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| Wagle S, Smith RD, Dominic AJ, et al. (2023) Sunsetting Binding MOAD with its last data update and the addition of 3D-ligand polypharmacology tools. Scientific Reports. 13: 3008 |
| Siebenaler RF, Chugh S, Waninger JJ, et al. (2022) Argonaute 2 modulates EGFR-RAS signaling to promote mutant and driven malignancies. Pnas Nexus. 1: pgac084 |
| Smith RD, Carlson HA. (2021) Identification of Cryptic Binding Sites Using MixMD with Standard and Accelerated Molecular Dynamics. Journal of Chemical Information and Modeling |
| Smith RD, Clark JJ, Ahmed A, et al. (2019) Updates to Binding MOAD (Mother of All Databases): Polypharmacology Tools and Their Utility in Drug Repurposing. Journal of Molecular Biology |
| Clark JJ, Benson ML, Smith RD, et al. (2019) Inherent versus induced protein flexibility: Comparisons within and between apo and holo structures. Plos Computational Biology. 15: e1006705 |
| Graham S, Smith RD, Carlson HA. (2017) Predicting Displaceable Water Sites Using Mixed-Solvent Molecular Dynamics. Journal of Chemical Information and Modeling |
| Smith RD, Lu J, Carlson HA. (2017) Are there physicochemical differences between allosteric and competitive ligands? Plos Computational Biology. 13: e1005813 |
| Carlson HA, Smith RD, Damm-Ganamet KL, et al. (2016) CSAR 2014: A Benchmark Exercise Using Unpublished Data from Pharma. Journal of Chemical Information and Modeling |
| Smith RD, Damm-Ganamet KL, Dunbar JB, et al. (2015) CSAR Benchmark Exercise 2013: Evaluation of Results from a Combined Computational Protein Design, Docking, and Scoring/Ranking Challenge. Journal of Chemical Information and Modeling |
| Ahmed A, Smith RD, Clark JJ, et al. (2015) Recent improvements to Binding MOAD: a resource for protein-ligand binding affinities and structures. Nucleic Acids Research. 43: D465-9 |