Migun Shakya
Affiliations: | Dartmouth College, Hanover, NH, United States |
Area:
microbe, evolutionGoogle:
"Migun Shakya"Parents
Sign in to add mentor| Mircea Podar | grad student | |||
| Christopher W. Schadt | grad student | 2013 | ||
| (Coadvisee with Mircea Podar) | ||||
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Publications
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| Connor R, Shakya M, Yarmosh DA, et al. (2024) Recommendations for Uniform Variant Calling of SARS-CoV-2 Genome Sequence across Bioinformatic Workflows. Viruses. 16 |
| Albright MBN, Gallegos-Graves V, Feeser KL, et al. (2022) Experimental evidence for the impact of soil viruses on carbon cycling during surface plant litter decomposition. Isme Communications. 2: 24 |
| Xiaoli L, Hagey JV, Park DJ, et al. (2022) Benchmark datasets for SARS-CoV-2 surveillance bioinformatics. Peerj. 10: e13821 |
| Shakya M, Ahmed SA, Davenport KW, et al. (2020) Standardized phylogenetic and molecular evolutionary analysis applied to species across the microbial tree of life. Scientific Reports. 10: 1723 |
| Shakya M, Lo CC, Chain PSG. (2019) Advances and Challenges in Metatranscriptomic Analysis. Frontiers in Genetics. 10: 904 |
| Kogay R, Neely TB, Birnbaum DP, et al. (2019) Machine-learning classification suggests that many alphaproteobacterial prophages may instead be gene transfer agents. Genome Biology and Evolution |
| Domman D, Ruis C, Dorman MJ, et al. (2019) Novel Insights Into the Spread of Enteric Pathogens Using Genomics. The Journal of Infectious Diseases |
| Connor R, Brister R, Buchmann JP, et al. (2019) NCBI's Virus Discovery Hackathon: Engaging Research Communities to Identify Cloud Infrastructure Requirements. Genes. 10 |
| Shakya M, Soucy SM, Zhaxybayeva O. (2017) Insights into origin and evolution of α-proteobacterial gene transfer agents. Virus Evolution. 3: vex036 |
| Hynes AP, Shakya M, Mercer RG, et al. (2016) Functional and evolutionary characterization of a gene transfer agent's multi-locus "genome". Molecular Biology and Evolution |