Thomas Perkins
Affiliations: | University of Colorado / JILA, Boulder, CO, United States |
Area:
Single Molecule BiophysicsWebsite:
http://jilawww.colorado.edu/perkinsgroup/tom.htmlGoogle:
"Thomas Perkins"Mean distance: 9.22 (cluster 17)
Cross-listing: Physics Tree
Parents
Sign in to add mentor| Steven Chu | grad student | Stanford (Physics Tree) | |
| Steven M. Block | post-doc | Stanford |
Children
Sign in to add trainee| Andrew M. Leifer | research assistant | 2005-2006 | University of Colorado / JILA (Neurotree) |
| Ashley R. Carter | grad student | 2008 | CU Boulder (Neurotree) |
| Martha Hosotani | grad student | 2011 | CU Boulder (Neurotree) |
| Amanda E. Carpenter | grad student | 2003-2011 | CU Boulder |
| Allison B. Churnside | grad student | 2013 | CU Boulder (Neurotree) |
| Gavin King | post-doc | University of Colorado / JILA (Neurotree) | |
| Rebecca Montange | post-doc | University of Colorado / JILA (Neurotree) | |
| Lora L. Nugent-Glandorf | post-doc | University of Colorado / JILA | |
| D. Hern Paik | post-doc | University of Colorado / JILA (Neurotree) | |
| Yeonee Seol | post-doc | University of Colorado / JILA (Neurotree) | |
| David R. Jacobson | post-doc | 2017- | CU Boulder (Physics Tree) |
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Publications
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| Jacobson DR, Perkins TT. (2024) Quantifying a light-induced energetic change in bacteriorhodopsin by force spectroscopy. Proceedings of the National Academy of Sciences of the United States of America. 121: e2313818121 |
| Taylor AMK, Okoniewski SR, Uyetake L, et al. (2022) Force-Activated DNA Substrates for In Situ Generation of ssDNA and Designed ssDNA/dsDNA Structures in an Optical-Trapping Assay. Methods in Molecular Biology (Clifton, N.J.). 2478: 273-312 |
| Jacobson DR, Perkins TT. (2021) Free-energy changes of bacteriorhodopsin point mutants measured by single-molecule force spectroscopy. Proceedings of the National Academy of Sciences of the United States of America. 118 |
| Edwards DT, LeBlanc MA, Perkins TT. (2021) Modulation of a protein-folding landscape revealed by AFM-based force spectroscopy notwithstanding instrumental limitations. Proceedings of the National Academy of Sciences of the United States of America. 118 |
| Jacobson DR, Perkins TT. (2020) Correcting molecular transition rates measured by single-molecule force spectroscopy for limited temporal resolution. Physical Review. E. 102: 022402 |
| Yu H, Jacobson DR, Luo H, et al. (2020) Quantifying the Native Energetics Stabilizing Bacteriorhodopsin by Single-Molecule Force Spectroscopy. Physical Review Letters. 125: 068102 |
| Jacobson DR, Uyetake L, Perkins TT. (2019) Membrane-Protein Unfolding Intermediates Detected with Enhanced Precision Using a Zigzag Force Ramp. Biophysical Journal |
| Walder R, Van Patten WJ, Ritchie DB, et al. (2018) High-Precision Single-Molecule Characterization of the Folding of an HIV RNA Hairpin by Atomic Force Microscopy. Nano Letters |
| LeBlanc M, Walder R, Edwards D, et al. (2018) High Precision AFM-Based SMFS of Mechanically Labile T3SS Effectors Biophysical Journal. 114: 355a |
| Walder R, Miller TW, Van Patten WJ, et al. (2018) New Obligate Folding Intermediate of an RNA Pseudoknot Observed Using Atomic Force Microscopy Based Force Spectroscopy with 10 μs Resolution Biophysical Journal. 114: 354a |