Tommi S. Jaakkola

Affiliations: 
Massachusetts Institute of Technology, Cambridge, MA, United States 
Website:
http://people.csail.mit.edu/tommi/
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"Tommi Jaakkola"
Mean distance: 14.36 (cluster 29)
 
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Ziv Bar-Joseph grad student MIT (MathTree)
Tatsunori Hashimoto grad student MIT (MathTree)
David Sontag grad student MIT (Computer Science Tree)
Martin Wainwright grad student MIT
Tony Jebara grad student 1999-2002 MIT
Nathan Srebro grad student 2004 MIT (MathTree)
Claire Monteleoni grad student 2006 MIT
David Alvarez-Melis grad student 2019 MIT
Shubhendu Trivedi post-doc MIT
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Publications

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Yang K, Swanson K, Jin W, et al. (2019) Analyzing Learned Molecular Representations for Property Prediction. Journal of Chemical Information and Modeling
Coley CW, Jin W, Rogers L, et al. (2019) A graph-convolutional neural network model for the prediction of chemical reactivity. Chemical Science. 10: 370-377
Hazan T, Orabona F, Sarwate AD, et al. (2019) High Dimensional Inference With Random Maximum A-Posteriori Perturbations Ieee Transactions On Information Theory. 65: 6539-6560
Mueller J, Jaakkola T, Gifford D. (2018) Modeling Persistent Trends in Distributions. Journal of the American Statistical Association. 113: 1296-1310
Coley CW, Barzilay R, Green WH, et al. (2017) Convolutional embedding of attributed molecular graphs for physical property prediction. Journal of Chemical Information and Modeling
Hashimoto TB, Sherwood R, Kang DD, et al. (2016) A synergistic DNA logic predicts genome-wide chromatin accessibility. Genome Research
Hashimoto TB, Alvarez-Melis D, Jaakkola TS. (2016) Word Embeddings as Metric Recovery in Semantic Spaces Transactions of the Association For Computational Linguistics. 4: 273-286
Sherwood RI, Hashimoto T, O'Donnell CW, et al. (2014) Discovery of directional and nondirectional pioneer transcription factors by modeling DNase profile magnitude and shape. Nature Biotechnology. 32: 171-8
Hashimoto T, Jaakkola T, Sherwood R, et al. (2012) Lineage-based identification of cellular states and expression programs. Bioinformatics (Oxford, England). 28: i250-7
Guo Y, Papachristoudis G, Altshuler RC, et al. (2010) Discovering homotypic binding events at high spatial resolution. Bioinformatics (Oxford, England). 26: 3028-34
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