Michael Spencer Waterman
Affiliations: | Mathematics | University of Southern California, Los Angeles, CA, United States |
Area:
Computational Biology, Bioinformatics, Probability and Statistics, CombinatoricsWebsite:
https://dornsife.usc.edu/cf/faculty-and-staff/faculty.cfm?pid=1003812Google:
"Michael Spencer Waterman"Bio:
http://www.nasonline.org/member-directory/members/4194.html
https://dornsife.usc.edu/labs/msw/
https://www.genealogy.math.ndsu.nodak.edu/id.php?id=11490
Parents
Sign in to add mentor| John Rankin Kinney | grad student | 1969 | Michigan State | |
| (Some Ergodic Properties of Multi-Dimensional F-Expansions.) | ||||
Children
Sign in to add trainee| Pavel A. Pevzner | grad student | (Neurotree) | |
| Fengzhu Sun | grad student | USC (Computational Biology Tree) | |
| Mengxiang Tang | grad student | 2000 | USC |
| Anton Valouev | grad student | 2006 | USC |
| John P. McCrow | grad student | 2008 | USC |
| Michael R. Mehan | grad student | 2009 | USC |
| Christophe Lefevre | post-doc | (Computational Biology Tree) | |
| Tandy Jo Warnow | post-doc | 1991-1992 | USC (Computer Science Tree) |
BETA: Related publications
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Publications
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| Berger B, Waterman MS, Yu YW. (2021) Levenshtein Distance, Sequence Comparison and Biological Database Search. Ieee Transactions On Information Theory. 67: 3287-3294 |
| Zielezinski A, Girgis HZ, Bernard G, et al. (2019) Benchmarking of alignment-free sequence comparison methods. Genome Biology. 20: 144 |
| Chen S, Chen Y, Sun F, et al. (2019) A new statistic for efficient detection of repetitive sequences. Bioinformatics (Oxford, England) |
| Bai X, Tang K, Ren J, et al. (2017) Optimal choice of word length when comparing two Markov sequences using a χ (2)-statistic. Bmc Genomics. 18: 732 |
| Lu YY, Tang K, Ren J, et al. (2017) CAFE: aCcelerated Alignment-FrEe sequence analysis. Nucleic Acids Research |
| Liu CC, Tseng YT, Li W, et al. (2014) DiseaseConnect: a comprehensive web server for mechanism-based disease-disease connections. Nucleic Acids Research. 42: W137-46 |
| Song K, Ren J, Reinert G, et al. (2014) New developments of alignment-free sequence comparison: measures, statistics and next-generation sequencing. Briefings in Bioinformatics. 15: 343-53 |
| Behnam E, Waterman MS, Smith AD. (2013) A geometric interpretation for local alignment-free sequence comparison. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 20: 471-85 |
| Zhai Z, Reinert G, Song K, et al. (2012) Normal and compound poisson approximations for pattern occurrences in NGS reads. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 19: 839-54 |
| Liu X, Wan L, Li J, et al. (2011) New powerful statistics for alignment-free sequence comparison under a pattern transfer model. Journal of Theoretical Biology. 284: 106-16 |