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Gene W. Yeo, PhD, MBA

Affiliations:

Cellular and Molecular Medicine

University of California, San Diego, La Jolla, CA

Area:

RNA processing, neurodevelopment, neurodegeneration, computational biology

Website:

http://yeolab.ucsd.edu/yeolab/Home.html

Google:

Bio:

http://yeolab.ucsd.edu/yeolab/Gene_Yeo.html
http://hdl.handle.net/1721.1/28853

Mean distance: 12.96 (cluster 17)

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Cross-listing: Computational Biology Tree

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Parents

Christopher B. Burge	grad student	2004	MIT (Computational Biology Tree)
(Identification, improved modeling and integration of signals to predict constitutive and altering splicing)
Tomaso A. Poggio	grad student	2004	MIT
Fred H. (Rusty) Gage	post-doc	2005-2008	Salk Institute

Children

Samuel S. Park	research assistant		UCSD
En-Ching Luo	grad student	2014-	UCSD
Noorsher Ahmed	grad student	2017-	UC San Diego Health
Mary E. Winn	grad student	2011	UCSD
Anne Conway	grad student	2014	UCSD
Boyko Kakaradov	grad student	2014	UCSD
Olga B Botvinnik	grad student	2013-2017	UCSD
Norah Al-Azzam	grad student	2021-2024	UCSD

Collaborators

BETA: Related publications

Publications

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Gosztyla ML, Zhan L, Olson S, et al. (2024) Integrated multi-omics analysis of zinc-finger proteins uncovers roles in RNA regulation. Molecular Cell
Street LA, Rothamel KL, Brannan KW, et al. (2024) Large-scale map of RNA-binding protein interactomes across the mRNA life cycle. Molecular Cell
Liang Q, Yu T, Kofman E, et al. (2024) High-sensitivity in situ capture of endogenous RNA-protein interactions in fixed cells and primary tissues. Nature Communications. 15: 7067
Xiang JS, Schafer DM, Rothamel KL, et al. (2024) Decoding protein-RNA interactions using CLIP-based methodologies. Nature Reviews. Genetics
Her H, Rothamel KL, Nguyen GG, et al. (2024) Mudskipper detects combinatorial RNA binding protein interactions in multiplexed CLIP data. Cell Genomics. 4: 100603
Smargon AA, Pant D, Glynne S, et al. (2024) Small nuclear RNAs enhance protein-free RNA-programmable base conversion on mammalian coding transcripts. Biorxiv : the Preprint Server For Biology
Hawkins S, Mondaini A, Namboori SC, et al. (2024) ePRINT: exonuclease assisted mapping of protein-RNA interactions. Genome Biology. 25: 140
Mah CK, Ahmed N, Lopez NA, et al. (2024) Bento: a toolkit for subcellular analysis of spatial transcriptomics data. Genome Biology. 25: 82
Enustun E, Armbruster EG, Lee J, et al. (2024) A phage nucleus-associated RNA-binding protein is required for jumbo phage infection. Nucleic Acids Research
Busa VF, Ando Y, Aigner S, et al. (2024) Transcriptome regulation by PARP13 in basal and antiviral states in human cells. Iscience. 27: 109251

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