Jamie A. Repasky, Ph.D. - Related publications

Affiliations: 
2002 Yale University, New Haven, CT 
Area:
immunology
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50 most relevant papers in past 60 days:
Year Citation  Score
2020 Singh R, Deshmukh S, Kumar A, Goyal VD, Makde RD. Crystal structure of XCC3289 from Xanthomonas campestris: homology with the N-terminal substrate-binding domain of Lon peptidase. Acta Crystallographica. Section F, Structural Biology Communications. 76: 488-494. PMID 33006577 DOI: 10.1107/S2053230X20011875   
2020 Maksimov EG, Laptev GY, Blokhin DS, Klochkov VV, Slonimskiy YB, Sluchanko NN, Friedrich T, Chang CF, Polshakov VI. NMR resonance assignment and backbone dynamics of a C-terminal domain homolog of orange carotenoid protein. Biomolecular Nmr Assignments. PMID 32939684 DOI: 10.1007/s12104-020-09976-1   
2020 Peng Y, Du N, Lei Y, Dorje S, Qi J, Luo T, Gao GF, Song H. Structures of the SARS-CoV-2 nucleocapsid and their perspectives for drug design. The Embo Journal. e105938. PMID 32914439 DOI: 10.15252/embj.2020105938   
2020 Boldridge M, Shimabukuro J, Nakamatsu K, Won C, Jansen C, Turner H, Wang L. Characterization of the C-terminal tail of the Arc protein. Plos One. 15: e0239870. PMID 32991626 DOI: 10.1371/journal.pone.0239870   
2020 Lee CW, Lee S, Jeong CS, Hwang J, Chang JH, Choi IG, Kim TD, Park H, Kim HY, Lee JH. Structural insights into the psychrophilic germinal protease PaGPR and its autoinhibitory loop. Journal of Microbiology (Seoul, Korea). 58: 772-779. PMID 32870483 DOI: 10.1007/s12275-020-0292-0   
2020 Ekka M, Mondal A, Singh R, Sen H, Datta S, Raychaudhuri S. Arginine 37 of Glycine Linker Dictates Regulatory Function of HapR. Frontiers in Microbiology. 11: 1949. PMID 32973706 DOI: 10.3389/fmicb.2020.01949   
2020 Tsai RF, Lin NC, Kao TY, Kuo YH, Lo FC, Liaw WF, Chiang YW. Nitrosylation of the Diiron Core Mediated by the N Domain of YtfE. The Journal of Physical Chemistry Letters. PMID 32940468 DOI: 10.1021/acs.jpclett.0c02200   
2020 Bousset L, Luckgei N, Kabani M, Gardiennet C, Schütz AK, Melki R, Meier BH, Böckmann A. Prion Amyloid Polymorphs - The Tag Might Change It All. Frontiers in Molecular Biosciences. 7: 190. PMID 32850974 DOI: 10.3389/fmolb.2020.00190   
2020 Chataigner LMP, Leloup N, Janssen BJC. Structural Perspectives on Extracellular Recognition and Conformational Changes of Several Type-I Transmembrane Receptors. Frontiers in Molecular Biosciences. 7: 129. PMID 32850948 DOI: 10.3389/fmolb.2020.00129   
2020 Fukai ST, Hibi R, Naganuma T, Sakai M, Saijo S, Shimizu N, Matsumoto M, Shimizu T. Crystal structure of GCN5 PCAF N-terminal domain reveals atypical ubiquitin ligase structure. The Journal of Biological Chemistry. PMID 32820047 DOI: 10.1074/jbc.RA120.013431   
2020 Pluvinage B, Robb CS, Jeffries R, Boraston AB. The structure of PfGH50B, an agarase from the marine bacterium Pseudoalteromonas fuliginea PS47. Acta Crystallographica. Section F, Structural Biology Communications. 76: 422-427. PMID 32880590 DOI: 10.1107/S2053230X20010328   
2020 Staby L, Kemplen KR, Stein A, Ploug M, Clarke J, Skriver K, Heidarsson PO, Kragelund BB. Disorder in a two-domain neuronal Ca-binding protein regulates domain stability and dynamics using ligand mimicry. Cellular and Molecular Life Sciences : Cmls. PMID 32936312 DOI: 10.1007/s00018-020-03639-z   
2020 Zhang J, Wang YY, Du LL, Ye K. Cryo-EM structure of fission yeast tetrameric α-mannosidase Ams1. Febs Open Bio. PMID 32981237 DOI: 10.1002/2211-5463.12988   
2020 Stojanovski BM, Pelc LA, Zuo X, Di Cera E. Zymogen and activated protein C have similar structural architecture. The Journal of Biological Chemistry. PMID 32855236 DOI: 10.1074/jbc.RA120.014789   
2020 Sharma V, Shing B, Hernandez-Alvarez L, Debnath A, Podust LM. . Molecular Pharmacology. PMID 33008918 DOI: 10.1124/molpharm.120.000092   
2020 Vattepu R, Klausmeyer RA, Ayella A, Yadav R, Dille JT, Saiz SV, Beck MR. Conserved tryptophan mutation disrupts structure and function of immunoglobulin domain revealing unusual tyrosine fluorescence. Protein Science : a Publication of the Protein Society. PMID 32797644 DOI: 10.1002/pro.3929   
2020 Rosenberg EM, Herrington J, Rajasekaran D, Murphy JW, Pantouris G, Lolis EJ. The N-terminal length and side-chain composition of CXCL13 affect crystallization, structure and functional activity. Acta Crystallographica. Section D, Structural Biology. 76: 1033-1049. PMID 33021505 DOI: 10.1107/S2059798320011687   
2020 Sakurai S, Shimizu T, Ohto U. Crystal structure of the FYCO1 RUN domain suggests possible interfaces with small GTPases. Acta Crystallographica. Section F, Structural Biology Communications. 76: 326-333. PMID 32744243 DOI: 10.1107/S2053230X20009012   
2020 Wu J, Qu C, Zhang S, Chen W, Wang S. The second N-terminal aromatic residue of the fungal defensin, blapersin, of Blastomyces percursus is essential for its antibacterial activity. Peptides. 170400. PMID 32871207 DOI: 10.1016/j.peptides.2020.170400   
2020 Wu J, Qu C, Zhang S, Chen W, Wang S. The second N-terminal aromatic residue of the fungal defensin, blapersin, of Blastomyces percursus is essential for its antibacterial activity. Peptides. 170400. PMID 32871207 DOI: 10.1016/j.peptides.2020.170400   
2020 Dominguez-Martin MA, Hammel M, Gupta S, Lechno-Yossef S, Sutter M, Rosenberg DJ, Chen Y, Petzold CJ, Ralston CY, Polívka T, Kerfeld CA. Structural analysis of a new carotenoid-binding protein: the C-terminal domain homolog of the OCP. Scientific Reports. 10: 15564. PMID 32968135 DOI: 10.1038/s41598-020-72383-y   
2020 Gutiérrez A, Ferreira GM, Machuca J, Venthur H, Feres F, Hirata MH, Hirata RDC, Cerda A. Characterization of the adipogenic protein E4orf1 from adenovirus 36 through an in silico approach. Journal of Molecular Modeling. 26: 285. PMID 32978703 DOI: 10.1007/s00894-020-04531-0   
2020 Kadkhodayi-Kholghi N, Bhatt JS, Gor J, McDermott LC, Gale DP, Perkins SJ. The solution structure of the complement deregulator FHR5 reveals a compact dimer and provides new insights into CFHR5 nephropathy. The Journal of Biological Chemistry. PMID 32928961 DOI: 10.1074/jbc.RA120.015132   
2020 Plaks JG, Brewer JA, Jacobsen NK, McKenna M, Uzarski JR, Lawton TJ, Filocamo SF, Kaar JL. Rosetta-enabled Structural Prediction of Permissive Loop Insertion Sites in Proteins. Biochemistry. PMID 32970423 DOI: 10.1021/acs.biochem.0c00533   
2020 Zinzula L, Basquin J, Bohn S, Beck F, Klumpe S, Pfeifer G, Nagy I, Bracher A, Hartl FU, Baumeister W. High-resolution structure and biophysical characterization of the nucleocapsid phosphoprotein dimerization domain from the Covid-19 severe acute respiratory syndrome coronavirus 2. Biochemical and Biophysical Research Communications. PMID 33039147 DOI: 10.1016/j.bbrc.2020.09.131   
2020 Lokareddy RK, Ko YH, Hong N, Doll SG, Paduch M, Niederweis M, Kossiakoff AA, Cingolani G. Recognition of an α-helical hairpin in P22 large terminase by a synthetic antibody fragment. Acta Crystallographica. Section D, Structural Biology. 76: 876-888. PMID 32876063 DOI: 10.1107/S2059798320009912   
2020 He F, Endo R, Kuwasako K, Takahashi M, Tsuda K, Nagata T, Watanabe S, Tanaka A, Kobayashi N, Kigawa T, Güntert P, Shirouzu M, Yokoyama S, Muto Y. H, C and N resonance assignment of the YTH domain of YTHDC2. Biomolecular Nmr Assignments. PMID 32930954 DOI: 10.1007/s12104-020-09974-3   
2020 Cai R, Liu X, Zhang R, Hofmann L, Zheng W, Amin MR, Wang L, Hu Q, Peng JB, Michalak M, Flockerzi V, Ali DW, Chen XZ, Tang J. Autoinhibition of TRPV6 Channel and Regulation by PIP2. Iscience. 23: 101444. PMID 32829285 DOI: 10.1016/j.isci.2020.101444   
2020 Harrison PM. Variable absorption of mutational trends by prion-forming domains during evolution. Peerj. 8: e9669. PMID 32844065 DOI: 10.7717/peerj.9669   
2020 Gosu V, Shin D, Song KD, Heo J, Oh JD. Molecular modeling and dynamic simulation of chicken Mx protein with the S631N polymorphism. Journal of Biomolecular Structure & Dynamics. 1-10. PMID 32962555 DOI: 10.1080/07391102.2020.1819419   
2020 Chen SK, Guan HH, Wu PH, Lin LT, Wu MC, Chang HY, Chen NC, Lin CC, Chuankhayan P, Huang YC, Lin PJ, Chen CJ. Structural insights into the histidine-containing phospho-transfer protein and receiver domain of sensor histidine kinase suggest a complex model in the two-component regulatory system in . Iucrj. 7: 934-948. PMID 32939285 DOI: 10.1107/S2052252520009665   
2020 Chen X, Rajasekaran N, Liu K, Kaiser CM. Synthesis runs counter to directional folding of a nascent protein domain. Nature Communications. 11: 5096. PMID 33037221 DOI: 10.1038/s41467-020-18921-8   
2020 Kozak JJ, Gray HB, Garza-López RA. Unfolding cytochromes c-b and Rd apo b. Journal of Inorganic Biochemistry. 211: 111209. PMID 32818710 DOI: 10.1016/j.jinorgbio.2020.111209   
2020 Denisov SS, Ramírez-Escudero M, Heinzmann ACA, Ippel JH, Dawson PE, Koenen RR, Hackeng TM, Janssen BJC, Dijkgraaf I. Structural characterization of anti-CCL5 activity of the tick salivary protein Evasin-4. The Journal of Biological Chemistry. PMID 32817341 DOI: 10.1074/jbc.RA120.013891   
2020 Lai CH, Chang CC, Chuang HC, Tan TH, Lyu PC. Structural Insights into the Active Site Formation of DUSP22 in N-loop-containing Protein Tyrosine Phosphatases. International Journal of Molecular Sciences. 21. PMID 33053837 DOI: 10.3390/ijms21207515   
2020 Iuliano JN, Tolentino Collado J, Gil AA, Ravindran PT, Lukacs A, Shin S, Woroniecka HA, Adamczyk K, Aramini JM, Edupuganti UR, Hall CR, Greetham GM, Sazanovich IV, Clark IP, Daryaee T, et al. Unraveling the Mechanism of a LOV Domain Optogenetic Sensor: A Glutamine Lever Induces Unfolding of the Jα Helix. Acs Chemical Biology. PMID 32880430 DOI: 10.1021/acschembio.0c00543   
2020 Vance TDR, Ye Q, Conroy B, Davies PL. Essential role of calcium in extending RTX adhesins to their target. Journal of Structural Biology: X. 4: 100036. PMID 32984811 DOI: 10.1016/j.yjsbx.2020.100036   
2020 Ryzhov P, Tian Y, Yao Y, Bobkov AA, Im W, Marassi FM. Conformational States of the Cytoprotective Protein Bcl-xL. Biophysical Journal. PMID 32888404 DOI: 10.1016/j.bpj.2020.08.014   
2020 Bochel AJ, Williams C, McCoy AJ, Hoppe HJ, Winter AJ, Nicholls RD, Harlos K, Jones EY, Berger I, Hassan AB, Crump MP. Structure of the Human Cation-Independent Mannose 6-Phosphate/IGF2 Receptor Domains 7-11 Uncovers the Mannose 6-Phosphate Binding Site of Domain 9. Structure (London, England : 1993). PMID 32877646 DOI: 10.1016/j.str.2020.08.002   
2020 Gao M, Mackley IGP, Mesbahi-Vasey S, Bamonte HA, Struyvenberg SA, Landolt L, Pederson NJ, Williams LI, Bahl CD, Brooks L, Amacher JF. Structural Characterization and Computational Analysis of PDZ domains in Monosiga brevicollis. Protein Science : a Publication of the Protein Society. PMID 32914530 DOI: 10.1002/pro.3947   
2020 Ren SM, Liu F, Wu YQ, Chen Q, Zhang ZJ, Yu HL, Xu JH. Identification two key residues at the intersection of domains of a thioether monooxygenase for improving its sulfoxidation performance. Biotechnology and Bioengineering. PMID 33073356 DOI: 10.1002/bit.27604   
2020 Shen C, Liu H, Guan Z, Junjie Y, Ting Z, Yan W, Wu C, Zhang Q, Yin P, Xing Y. Structural Insight into DNA Recognition by CCT/NF-YB/YC Complexes in Plant Photoperiodic Flowering. The Plant Cell. PMID 32843433 DOI: 10.1105/tpc.20.00067   
2020 Jiang Y, Liu T, Lee CH, Chang Q, Yang J, Zhang Z. The NAD-mediated self-inhibition mechanism of pro-neurodegenerative Sarm1. Nature. PMID 33053563 DOI: 10.1038/s41586-020-2862-z   
2020 Pawar S, Hsu L, Narendar Reddy T, Ravinder M, Ren CT, Lin YW, Cheng YY, Lin TW, Hsu TL, Wang SK, Wong CH, Wu CY. Synthesis of Asymmetric N-Glycans as Common Core Substrates for Structural Diversification through Selective Enzymatic Glycosylation. Acs Chemical Biology. PMID 32830946 DOI: 10.1021/acschembio.0c00359   
2020 Rasmussen KK, Palencia A, Varming AK, El-Wali H, Boeri Erba E, Blackledge M, Hammer K, Herrmann T, Kilstrup M, Lo Leggio L, Jensen MR. Revealing the mechanism of repressor inactivation during switching of a temperate bacteriophage. Proceedings of the National Academy of Sciences of the United States of America. 117: 20576-20585. PMID 32788352 DOI: 10.1073/pnas.2005218117   
2020 Wang Y, Wang B, Liu M, Jiang K, Wang M, Wang L. Characterization and function analysis of a Kazal-type serine proteinase inhibitor in the red claw crayfish Cherax quadricarinatus. Developmental and Comparative Immunology. 103871. PMID 32946920 DOI: 10.1016/j.dci.2020.103871   
2020 Kim J, Kim D, Cheon CI, Kim S. Modeling-based identification of a Raptor-binding motif present in Arabidopsis ABA receptor PYL1. Biochemical and Biophysical Research Communications. PMID 33070969 DOI: 10.1016/j.bbrc.2020.10.009   
2020 Lenza MP, Oyenarte I, Diercks T, Quintana JI, Gimeno A, Bosch A, Coelho H, Diniz A, Peccati F, Delgado S, Valle M, Millet O, Abrescia NGA, Palazón A, Marcelo F, et al. Structural characterization of the N-linked glycans in the receptor binding domain of the SARS-CoV-2 spike protein and their interactions with human lectins using NMR spectroscopy. Angewandte Chemie (International Ed. in English). PMID 32915505 DOI: 10.1002/anie.202011015   
2020 Huang SP, Zhou LC, Wen B, Wang P, Zhu GP. Biochemical Characterization and Crystal Structure of a Novel NAD-Dependent Isocitrate Dehydrogenase from . International Journal of Molecular Sciences. 21. PMID 32824636 DOI: 10.3390/ijms21165915   
2020 Greenfield J, Shang X, Luo H, Zhou Y, Linden SB, Heselpoth RD, Leiman PG, Nelson DC, Herzberg O. Structure and function of bacteriophage CBA120 ORF211 (TSP2), the determinant of phage specificity towards E. coli O157:H7. Scientific Reports. 10: 15402. PMID 32958885 DOI: 10.1038/s41598-020-72373-0