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Mark Damian McDonnell - Publications

Affiliations: 
University of Adelaide, Adelaide, South Australia, Australia 
Area:
Computational neuroscience, stochastic neurodynamical models
Website:
http://www.eleceng.adelaide.edu.au/Personal/mmcdonne/

50 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Moezzi B, Schaworonkow N, Plogmacher L, Goldsworthy MR, Hordacre B, Mcdonnell M, Iannella N, Ridding MC, Triesch J. Simulation of electromyographic recordings following transcranial magnetic stimulation. Journal of Neurophysiology. PMID 29975165 DOI: 10.1152/Jn.00626.2017  0.658
2017 Xu L, Duan F, Gao X, Abbott D, McDonnell MD. Adaptive recursive algorithm for optimal weighted suprathreshold stochastic resonance. Royal Society Open Science. 4: 160889. PMID 28989729 DOI: 10.1098/rsos.160889  0.48
2017 McDonnell MD, Graham BP. Phase changes in neuronal postsynaptic spiking due to short term plasticity. Plos Computational Biology. 13: e1005634. PMID 28937977 DOI: 10.1371/journal.pcbi.1005634  0.304
2017 Newton AJH, Seidenstein AH, McDougal RA, Pérez-Cervera A, Huguet G, M-Seara T, Haimerl C, Angulo-Garcia D, Torcini A, Cossart R, Malvache A, Skiker K, Maouene M, Ragognetti G, Lorusso L, ... ... McDonnell MD, et al. 26th Annual Computational Neuroscience Meeting (CNS*2017): Part 3 Bmc Neuroscience. 18. DOI: 10.1186/S12868-017-0372-1  0.622
2017 Cheng C, Zhou B, Gao X, McDonnell MD. M-ary suprathreshold stochastic resonance in multilevel threshold systems with signal-dependent noise Physica a-Statistical Mechanics and Its Applications. 479: 48-56. DOI: 10.1016/J.Physa.2017.03.010  0.383
2016 Sharpee TO, Destexhe A, Kawato M, Sekulić V, Skinner FK, Wójcik DK, Chintaluri C, Cserpán D, Somogyvári Z, Kim JK, Kilpatrick ZP, Bennett MR, Josić K, Elices I, Arroyo D, ... ... McDonnell MD, et al. 25th Annual Computational Neuroscience Meeting: CNS-2016 Bmc Neuroscience. 17: 54. PMID 27534393 DOI: 10.1186/S12868-016-0283-6  0.625
2016 Moezzi B, Iannella N, McDonnell MD. Ion channel noise can explain firing correlation in auditory nerves. Journal of Computational Neuroscience. PMID 27480847 DOI: 10.1007/S10827-016-0613-9  0.667
2016 McDonnell MD, Goldwyn JH, Lindner B. Editorial: Neuronal Stochastic Variability: Influences on Spiking Dynamics and Network Activity. Frontiers in Computational Neuroscience. 10: 38. PMID 27148035 DOI: 10.3389/Fncom.2016.00038  0.398
2016 Gunn LJ, Chapeau-Blondeau F, McDonnell MD, Davis BR, Allison A, Abbott D. Too good to be true: when overwhelming evidence fails to convince. Proceedings. Mathematical, Physical, and Engineering Sciences / the Royal Society. 472: 20150748. PMID 27118917 DOI: 10.1098/rspa.2015.0748  0.411
2016 Xu L, Duan F, Abbott D, McDonnell MD. Optimal weighted suprathreshold stochastic resonance with multigroup saturating sensors Physica a: Statistical Mechanics and Its Applications. 457: 348-355. DOI: 10.1016/j.physa.2016.03.064  0.467
2015 McDonnell MD, Tissera MD, Vladusich T, van Schaik A, Tapson J. Fast, Simple and Accurate Handwritten Digit Classification by Training Shallow Neural Network Classifiers with the 'Extreme Learning Machine' Algorithm. Plos One. 10: e0134254. PMID 26262687 DOI: 10.1371/journal.pone.0134254  0.309
2015 McDonnell MD, Iannella N, To MS, Tuckwell HC, Jost J, Gutkin BS, Ward LM. A review of methods for identifying stochastic resonance in simulations of single neuron models. Network (Bristol, England). 26: 35-71. PMID 25760433 DOI: 10.3109/0954898X.2014.990064  0.7
2015 Greenwood PE, McDonnell MD, Ward LM. Dynamics of gamma bursts in local field potentials. Neural Computation. 27: 74-103. PMID 25380331 DOI: 10.1162/Neco_A_00688  0.316
2015 Zhou B, McDonnell MD. Optimising threshold levels for information transmission in binary threshold networks: Independent multiplicative noise on each threshold Physica a: Statistical Mechanics and Its Applications. 419: 659-667. DOI: 10.1016/j.physa.2014.10.074  0.401
2014 Moezzi B, Iannella N, McDonnell MD. Modeling the influence of short term depression in vesicle release and stochastic calcium channel gating on auditory nerve spontaneous firing statistics. Frontiers in Computational Neuroscience. 8: 163. PMID 25566047 DOI: 10.3389/Fncom.2014.00163  0.663
2014 McDonnell MD, Yavero?lu ÖN, Schmerl BA, Iannella N, Ward LM. Motif-role-fingerprints: the building-blocks of motifs, clustering-coefficients and transitivities in directed networks. Plos One. 9: e114503. PMID 25486535 DOI: 10.1371/Journal.Pone.0114503  0.647
2014 Gao X, Grayden DB, McDonnell MD. Stochastic information transfer from cochlear implant electrodes to auditory nerve fibers. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 90: 022722. PMID 25215773 DOI: 10.1103/PhysRevE.90.022722  0.305
2014 McDonnell MD, Ward LM. Small modifications to network topology can induce stochastic bistable spiking dynamics in a balanced cortical model. Plos One. 9: e88254. PMID 24743633 DOI: 10.1371/journal.pone.0088254  0.347
2014 McDonnell MD, Gao X. M-ary suprathreshold stochastic resonance: Generalization and scaling beyond binary threshold nonlinearities Epl. 108. DOI: 10.1209/0295-5075/108/60003  0.355
2014 Xu L, Vladusich T, Duan F, Gunn LJ, Abbott D, McDonnell MD. Decoding suprathreshold stochastic resonance with optimal weights Physics Letters, Section a: General, Atomic and Solid State Physics. DOI: 10.1016/j.physleta.2015.05.032  0.489
2013 Schmerl BA, McDonnell MD. Channel-noise-induced stochastic facilitation in an auditory brainstem neuron model. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 88: 052722. PMID 24329311 DOI: 10.1103/PhysRevE.88.052722  0.402
2013 McDonnell MD, Ward LM. Identifying positive roles for endogenous stochastic noise during computation in neural systems. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 2013: 5232-5. PMID 24110915 DOI: 10.1109/EMBC.2013.6610728  0.323
2013 McDonnell MD, Li F, Amblard PO, Grant AJ. Optimal sensor selection for noisy binary detection in stochastic pooling networks. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 88: 022118. PMID 24032786 DOI: 10.1103/PhysRevE.88.022118  0.362
2013 McDonnell MD, Mohan A, Stricker C. Mathematical analysis and algorithms for efficiently and accurately implementing stochastic simulations of short-term synaptic depression and facilitation. Frontiers in Computational Neuroscience. 7: 58. PMID 23675343 DOI: 10.3389/fncom.2013.00058  0.314
2013 Mohan A, McDonnell MD, Stricker C. Interaction of short-term depression and firing dynamics in shaping single neuron encoding. Frontiers in Computational Neuroscience. 7: 41. PMID 23626533 DOI: 10.3389/fncom.2013.00041  0.313
2013 Kostal L, Lansky P, McDonnell MD. Metabolic cost of neuronal information in an empirical stimulus-response model. Biological Cybernetics. 107: 355-65. PMID 23467914 DOI: 10.1007/s00422-013-0554-6  0.33
2013 Schmerl BA, McDonnell MD. Publisher's Note: Channel-noise-induced stochastic facilitation in an auditory brainstem neuron model [Phys. Rev. E 88, 052722 (2013)] Physical Review E. 88: 69902. DOI: 10.1103/Physreve.88.069902  0.367
2013 Prettejohn BJ, Berryman MJ, McDonnell MD. A model of the effects of authority on consensus formation in adaptive networks: Impact on network topology and robustness Physica a: Statistical Mechanics and Its Applications. 392: 857-868. DOI: 10.1016/j.physa.2012.10.018  0.322
2012 McDonnell MD, Mohan A, Stricker C, Ward LM. Input-rate modulation of γ oscillations is sensitive to network topology, delays and short-term plasticity. Brain Research. 1434: 162-77. PMID 22000590 DOI: 10.1016/j.brainres.2011.08.070  0.341
2011 McDonnell MD, Ward LM. The benefits of noise in neural systems: bridging theory and experiment. Nature Reviews. Neuroscience. 12: 415-26. PMID 21685932 DOI: 10.1038/nrn3061  0.393
2011 Prettejohn BJ, Berryman MJ, McDonnell MD. Methods for generating complex networks with selected structural properties for simulations: a review and tutorial for neuroscientists. Frontiers in Computational Neuroscience. 5: 11. PMID 21441986 DOI: 10.3389/fncom.2011.00011  0.3
2011 Mohan A, McDonnell MD, Stricker C. Matching synaptic type with postsynaptic firing class shapes the encoding of either stimulus rate or rate change Bmc Neuroscience. 12. DOI: 10.1186/1471-2202-12-S1-P321  0.305
2011 McDonnell MD, Grant AJ, Land I, Vellambi BN, Abbott D, Lever K. Gain from the two-envelope problem via information asymmetry: On the suboptimality of randomized switching Proceedings of the Royal Society a: Mathematical, Physical and Engineering Sciences. 467: 2825-2851. DOI: 10.1098/Rspa.2010.0541  0.437
2010 McDonnell MD, Amblard PO, Stocks NG. Bio-inspired communication: Performance limits for information transmission and compression in stochastic pooling networks with binary quantizing nodes Journal of Computational and Theoretical Nanoscience. 7: 876-883. DOI: 10.1166/jctn.2010.1434  0.42
2010 McDonnell MD, Stocks NG, Amblard PO. Communication of uncoded sensor measurements through nanoscale binary-node stochastic pooling networks Nano Communication Networks. 1: 209-223. DOI: 10.1016/j.nancom.2010.09.006  0.306
2009 McDonnell MD, Flitney AP. Signal acquisition via polarization modulation in single photon sources. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 80: 060102. PMID 20365102 DOI: 10.1103/PhysRevE.80.060102  0.339
2009 Nikitin AP, Stocks NG, Morse RP, McDonnell MD. Neural population coding is optimized by discrete tuning curves. Physical Review Letters. 103: 138101. PMID 19905542 DOI: 10.1103/PhysRevLett.103.138101  0.331
2009 McDonnell MD, Abbott D. What is stochastic resonance? Definitions, misconceptions, debates, and its relevance to biology. Plos Computational Biology. 5: e1000348. PMID 19562010 DOI: 10.1371/journal.pcbi.1000348  0.527
2009 McDonnell MD. Information capacity of stochastic pooling networks is achieved by discrete inputs. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 79: 041107. PMID 19518173 DOI: 10.1103/PhysRevE.79.041107  0.416
2009 Mcdonnell MD, Abbott D. Randomized switching in the two-envelope problem Proceedings of the Royal Society a: Mathematical, Physical and Engineering Sciences. 465: 3309-3322. DOI: 10.1098/rspa.2009.0312  0.388
2009 McDonnell MD, Amblard PO, Stocks NG. Stochastic pooling networks Journal of Statistical Mechanics: Theory and Experiment. 2009. DOI: 10.1088/1742-5468/2009/01/P01012  0.351
2008 McDonnell MD, Stocks NG. Maximally informative stimuli and tuning curves for sigmoidal rate-coding neurons and populations. Physical Review Letters. 101: 058103. PMID 18764432 DOI: 10.1103/PhysRevLett.101.058103  0.335
2007 McDonnell MD, Stocks NG, Abbott D. Optimal stimulus and noise distributions for information transmission via suprathreshold stochastic resonance. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 75: 061105. PMID 17677218 DOI: 10.1103/PhysRevE.75.061105  0.552
2007 McDonnell M. A biologically inspired approach to signal compression Spie Newsroom. DOI: 10.1117/2.1200702.0644  0.418
2006 McDonnell MD, Stocks NG, Pearce CEM, Abbott D. How to use noise to reduce complexity in quantization Proceedings of Spie - the International Society For Optical Engineering. 6039. DOI: 10.1117/12.638476  0.519
2006 McDonnell MD, Stocks NG, Pearce CEM, Abbott D. Optimal information transmission in nonlinear arrays through suprathreshold stochastic resonance Physics Letters, Section a: General, Atomic and Solid State Physics. 352: 183-189. DOI: 10.1016/j.physleta.2005.11.068  0.516
2005 Mcdonnell MD, Stocks NG, Pearce CEM, Abbott D. Quantization in the presence of large amplitude threshold noise Fluctuation and Noise Letters. 5: L457-L468. DOI: 10.1142/S0219477505002884  0.536
2003 McDonnell MD, Stocks NG, Pearce CEM. Stochastic resonance and data processing inequality Electronics Letters. 39: 1287-1288. DOI: 10.1049/el:20030792  0.359
2002 Mcdonnell MD, Abbott D, Pearce CEM. A characterization of suprathreshold stochastic resonance in an array of comparators by correlation coefficient Fluctuation and Noise Letters. 2. DOI: 10.1142/S0219477502000786  0.525
2002 McDonnell MD, Abbott D, Pearce CEM. An analysis of noise enhanced information transmission in an array of comparators Microelectronics Journal. 33: 1079-1089. DOI: 10.1016/S0026-2692(02)00113-1  0.533
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