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Jonathan K. Whitmer, Ph.D. - Publications

Affiliations: 
2011 Physics University of Illinois, Urbana-Champaign, Urbana-Champaign, IL 
Area:
single-molecule methods, polymers, complex fluids, and biomaterials
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38 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Shi J, Albreiki F, Yamil J Colón, Srivastava S, Whitmer JK. Transfer Learning Facilitates the Prediction of Polymer-Surface Adhesion Strength. Journal of Chemical Theory and Computation. PMID 37068204 DOI: 10.1021/acs.jctc.2c01314  0.625
2022 Shi J, Quevillon MJ, Amorim Valença PH, Whitmer JK. Predicting Adhesive Free Energies of Polymer-Surface Interactions with Machine Learning. Acs Applied Materials & Interfaces. 14: 37161-37169. PMID 35917495 DOI: 10.1021/acsami.2c08891  0.628
2022 Shi J, Huang S, Gygi F, Whitmer JK. Free-Energy Landscape and Isomerization Rates of Au Clusters at Finite Temperatures. The Journal of Physical Chemistry. A. PMID 35584205 DOI: 10.1021/acs.jpca.2c02732  0.625
2020 Huang S, Quevillon MJ, Kyhl S, Whitmer JK. Surveying the free energy landscape of clusters of attractive colloidal spheres. The Journal of Chemical Physics. 152: 134901. PMID 32268752 DOI: 10.1063/1.5144984  0.356
2020 Sevgen E, Guo A, Sidky H, Whitmer JK, de Pablo JJ. Combined Force-Frequency Sampling for Simulation of Systems Having Rugged Free Energy Landscapes. Journal of Chemical Theory and Computation. PMID 31951703 DOI: 10.1021/Acs.Jctc.9B00883  0.346
2019 Shi J, Sidky H, Whitmer JK. Novel elastic response in twist-bend nematic models. Soft Matter. PMID 31495852 DOI: 10.1039/C9Sm01395D  0.652
2019 Rathee VS, Sidky H, Sikora BJ, Whitmer JK. Explicit Ion Effects on the Charge and Conformation of Weak Polyelectrolytes. Polymers. 11. PMID 30960167 DOI: 10.3390/Polym11010183  0.372
2019 Han M, Whitmer JK, Luijten E. Dynamics and structure of colloidal aggregates under microchannel flow. Soft Matter. PMID 30633289 DOI: 10.1039/C8Sm01451E  0.387
2018 Rathee VS, Sidky H, Sikora BJ, Whitmer JK. Role of Associative Charging in the Entropy-Energy Balance of Polyelectrolyte Complexes. Journal of the American Chemical Society. PMID 30351015 DOI: 10.1021/Jacs.8B08649  0.352
2018 Sevgen E, Giberti F, Sidky H, Whitmer JK, Galli G, Gygi F, de Pablo JJ. Hierarchical Coupling of First Principles Molecular Dynamics with Advanced Sampling Methods. Journal of Chemical Theory and Computation. PMID 29694787 DOI: 10.1021/Acs.Jctc.8B00192  0.359
2018 Sidky H, de Pablo JJ, Whitmer JK. In Silico Measurement of Elastic Moduli of Nematic Liquid Crystals. Physical Review Letters. 120: 107801. PMID 29570343 DOI: 10.1103/Physrevlett.120.107801  0.378
2018 Rathee VS, Zervoudakis AJ, Sidky H, Sikora BJ, Whitmer JK. Weak polyelectrolyte complexation driven by associative charging. The Journal of Chemical Physics. 148: 114901. PMID 29566508 DOI: 10.1063/1.5017941  0.348
2018 Sidky H, Whitmer JK. Learning free energy landscapes using artificial neural networks. The Journal of Chemical Physics. 148: 104111. PMID 29544298 DOI: 10.1063/1.5018708  0.307
2018 Sidky H, Colón YJ, Helfferich J, Sikora BJ, Bezik C, Chu W, Giberti F, Guo AZ, Jiang X, Lequieu J, Li J, Moller J, Quevillon MJ, Rahimi M, Ramezani-Dakhel H, ... ... Whitmer JK, et al. SSAGES: Software Suite for Advanced General Ensemble Simulations. The Journal of Chemical Physics. 148: 044104. PMID 29390830 DOI: 10.1063/1.5008853  0.331
2018 Quevillon MJ, Whitmer JK. Charge Transport and Phase Behavior of Imidazolium-Based Ionic Liquid Crystals from Fully Atomistic Simulations. Materials (Basel, Switzerland). 11. PMID 29301305 DOI: 10.3390/Ma11010064  0.374
2017 Sidky H, Whitmer JK. The Emergent Nematic Phase in Ionic Chromonic Liquid Crystals. The Journal of Physical Chemistry. B. PMID 28613880 DOI: 10.1021/Acs.Jpcb.7B03113  0.409
2016 Sidky H, Whitmer JK. Elastic response and phase behavior in binary liquid crystal mixtures. Soft Matter. PMID 27093188 DOI: 10.1039/C5Sm03107A  0.365
2016 Sidky H, Whitmer JK. Elastic properties of common Gay–Berne nematogens from density of states (DOS) simulations Liquid Crystals. 43: 2285-2299. DOI: 10.1080/02678292.2016.1201869  0.34
2015 Whitmer JK, Fluitt AM, Antony L, Qin J, McGovern M, de Pablo JJ. Sculpting bespoke mountains: Determining free energies with basis expansions. The Journal of Chemical Physics. 143: 044101. PMID 26233101 DOI: 10.1063/1.4927147  0.356
2015 Perry SL, Leon L, Hoffmann KQ, Kade MJ, Priftis D, Black KA, Wong D, Klein RA, Pierce CF, Margossian KO, Whitmer JK, Qin J, de Pablo JJ, Tirrell M. Chirality-selected phase behaviour in ionic polypeptide complexes. Nature Communications. 6: 6052. PMID 25586861 DOI: 10.1038/Ncomms7052  0.507
2014 Qin J, Priftis D, Farina R, Perry SL, Leon L, Whitmer J, Hoffmann K, Tirrell M, de Pablo JJ. Interfacial Tension of Polyelectrolyte Complex Coacervate Phases. Acs Macro Letters. 3: 565-568. PMID 35590728 DOI: 10.1021/mz500190w  0.482
2014 Whitmer JK, Joshi AA, Carlton RJ, Abbott NL, de Pablo JJ. Surface Adsorption in Nonpolarizable Atomic Models. Journal of Chemical Theory and Computation. 10: 5616-5624. PMID 26583244 DOI: 10.1021/Ct5005406  0.38
2014 Whitmer JK, Chiu CC, Joshi AA, de Pablo JJ. Basis function sampling: a new paradigm for material property computation. Physical Review Letters. 113: 190602. PMID 25415892 DOI: 10.1103/Physrevlett.113.190602  0.364
2014 Freeman GS, Hinckley DM, Lequieu JP, Whitmer JK, de Pablo JJ. Coarse-grained modeling of DNA curvature. The Journal of Chemical Physics. 141: 165103. PMID 25362344 DOI: 10.1063/1.4897649  0.305
2014 Joshi AA, Whitmer JK, Guzmán O, Abbott NL, de Pablo JJ. Measuring liquid crystal elastic constants with free energy perturbations. Soft Matter. 10: 882-93. PMID 24837037 DOI: 10.1039/C3Sm51919H  0.391
2014 Jiang S, Yan J, Whitmer JK, Anthony SM, Luijten E, Granick S. Orientationally glassy crystals of Janus spheres Physical Review Letters. 112. DOI: 10.1103/Physrevlett.112.218301  0.68
2014 Qin J, Priftis D, Farina R, Perry SL, Leon L, Whitmer J, Hoffmann K, Tirrell M, De Pablo JJ. Interfacial tension of polyelectrolyte complex coacervate phases Acs Macro Letters. 3: 565-568. DOI: 10.1021/Mz500190W  0.525
2013 Whitmer JK, Wang X, Mondiot F, Miller DS, Abbott NL, de Pablo JJ. Nematic-field-driven positioning of particles in liquid crystal droplets. Physical Review Letters. 111: 227801. PMID 24329470 DOI: 10.1103/Physrevlett.111.227801  0.367
2013 Hinckley DM, Freeman GS, Whitmer JK, De Pablo JJ. An experimentally-informed coarse-grained 3-site-per-nucleotide model of DNA: Structure, thermodynamics, and dynamics of hybridization Journal of Chemical Physics. 139. PMID 24116642 DOI: 10.1063/1.4822042  0.348
2013 Whitmer JK, Joshi AA, Roberts TF, de Pablo JJ. Liquid-crystal mediated nanoparticle interactions and gel formation. The Journal of Chemical Physics. 138: 194903. PMID 23697437 DOI: 10.1063/1.4802774  0.408
2013 Whitmer JK, Roberts TF, Shekhar R, Abbott NL, de Pablo JJ. Modeling the polydomain-monodomain transition of liquid crystal elastomers. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 87: 020502. PMID 23496448 DOI: 10.1103/Physreve.87.020502  0.397
2012 Shekhar R, Whitmer JK, Malshe R, Moreno-Razo JA, Roberts TF, de Pablo JJ. Isotropic-nematic phase transition in the Lebwohl-Lasher model from density of states simulations. The Journal of Chemical Physics. 136: 234503. PMID 22779602 DOI: 10.1063/1.4722209  0.393
2011 Whitmer JK, Luijten E. Influence of hydrodynamics on cluster formation in colloid-polymer mixtures. The Journal of Physical Chemistry. B. 115: 7294-300. PMID 21574557 DOI: 10.1021/Jp111388M  0.377
2011 Chen Q, Diesel E, Whitmer JK, Bae SC, Luijten E, Granick S. Triblock colloids for directed self-assembly. Journal of the American Chemical Society. 133: 7725-7. PMID 21513357 DOI: 10.1021/Ja202360G  0.541
2011 Whitmer JK, Luijten E. Sedimentation of aggregating colloids. The Journal of Chemical Physics. 134: 034510. PMID 21261371 DOI: 10.1063/1.3525923  0.409
2011 Chen Q, Whitmer JK, Jiang S, Bae SC, Luijten E, Granick S. Supracolloidal reaction kinetics of Janus spheres. Science (New York, N.Y.). 331: 199-202. PMID 21233384 DOI: 10.1126/Science.1197451  0.584
2010 Whitmer JK, Luijten E. Fluid-solid boundary conditions for multiparticle collision dynamics. Journal of Physics. Condensed Matter : An Institute of Physics Journal. 22: 104106. PMID 21389440 DOI: 10.1088/0953-8984/22/10/104106  0.333
2005 Whitmer JK, Kiselev SB, Law BM. Adsorption at the liquid-vapor surface of a binary liquid mixture. The Journal of Chemical Physics. 123: 204720. PMID 16351306 DOI: 10.1063/1.2128705  0.301
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