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Matthew D. Shirley, Ph.D. - Publications

Affiliations: 
2013 Johns Hopkins University, Baltimore, MD 
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6/49 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Shirley MD, Frelin L, López JS, Jedlicka A, Dziedzic A, Frank-Crawford MA, Silverman W, Hagopian L, Pevsner J. Copy Number Variants Associated with 14 Cases of Self-Injurious Behavior. Plos One. 11: e0149646. PMID 26933844 DOI: 10.1371/Journal.Pone.0149646  0.566
2013 Shirley MD. Concerns regarding "Whole exome sequencing reveals minimal differences between cell line and whole blood derived DNA". Genomics. 102: 430. PMID 23916999 DOI: 10.1016/J.Ygeno.2013.07.013  0.302
2013 Baugher JD, Baugher BD, Shirley MD, Pevsner J. Sensitive and specific detection of mosaic chromosomal abnormalities using the Parent-of-Origin-based Detection (POD) method. Bmc Genomics. 14: 367. PMID 23724825 DOI: 10.1186/1471-2164-14-367  0.665
2013 Shirley MD, Tang H, Gallione CJ, Baugher JD, Frelin LP, Cohen B, North PE, Marchuk DA, Comi AM, Pevsner J. Sturge-Weber syndrome and port-wine stains caused by somatic mutation in GNAQ. The New England Journal of Medicine. 368: 1971-9. PMID 23656586 DOI: 10.1056/Nejmoa1213507  0.649
2012 Stevens EL, Baugher JD, Shirley MD, Frelin LP, Pevsner J. Unexpected relationships and inbreeding in HapMap phase III populations. Plos One. 7: e49575. PMID 23185369 DOI: 10.1371/Journal.Pone.0049575  0.597
2012 Shirley MD, Baugher JD, Stevens EL, Tang Z, Gerry N, Beiswanger CM, Berlin DS, Pevsner J. Chromosomal variation in lymphoblastoid cell lines. Human Mutation. 33: 1075-86. PMID 22374857 DOI: 10.1002/Humu.22062  0.602
Low-probability matches (unlikely to be authored by this person)
2020 Rago F, Elliott G, Li A, Sprouffske K, Kerr G, Desplat A, Abramowski D, Chen JT, Farsidjani A, Xiang KX, Bushold G, Feng Y, Shirley MD, Bric A, Vattay A, et al. The discovery of SWI/SNF chromatin remodeling activity as a novel and targetable dependency in uveal melanoma. Molecular Cancer Therapeutics. PMID 32747420 DOI: 10.1158/1535-7163.Mct-19-1013  0.297
2018 Leung GP, Feng T, Shirley MD, Sigoillot FD, Ruddy DA, Freeman AK, Jaskelioff M, Stuart DD. Abstract 965: Deleterious effects of MAPK pathway hyperactivation in BRAF-mutant melanoma Cancer Research. 78: 965-965. DOI: 10.1158/1538-7445.Am2018-965  0.29
2018 Leung GP, Feng T, Sigoillot FD, Geyer FC, Shirley MD, Ruddy DA, Rakiec D, Freeman AK, Engelman JA, Jaskelioff M, Stuart DD. Hyperactivation of MAPK Signaling is Deleterious to RAS/RAF Mutant Melanoma. Molecular Cancer Research : McR. PMID 30201825 DOI: 10.1158/1541-7786.Mcr-18-0327  0.28
2019 Hao HX, Wang H, Liu C, Kovats S, Velazquez R, Lu H, Pant B, Shirley M, Meyer MJ, Pu M, Lim J, Fleming M, Alexander L, Farsidjani A, LaMarche MJ, et al. Tumor intrinsic efficacy by SHP2 and RTK inhibitors in KRAS mutant cancers. Molecular Cancer Therapeutics. PMID 31439712 DOI: 10.1158/1535-7163.Mct-19-0170  0.275
2016 Munoz DM, Cassiani PJ, Li L, Billy E, Korn JM, Jones MD, Golji J, Ruddy DA, Yu K, McAllister G, DeWeck A, Abramowski D, Wan J, Shirley MD, Neshat SY, et al. CRISPR screens provide a comprehensive assessment of cancer vulnerabilities but generate false-positive hits for highly amplified genomic regions. Cancer Discovery. PMID 27260157 DOI: 10.1158/2159-8290.Cd-16-0178  0.272
2014 Budge GE, Shirley MD, Jones B, Quill E, Tomkies V, Feil EJ, Brown MA, Haynes EG. Molecular epidemiology and population structure of the honey bee brood pathogen Melissococcus plutonius. The Isme Journal. 8: 1588-97. PMID 24599072 DOI: 10.1038/ismej.2014.20  0.245
2015 Shirley MD, Ma Z, Pedersen BS, Wheelan SJ. Efficient "pythonic" access to FASTA files using pyfaidx Peerj. 3. DOI: 10.7287/Peerj.Preprints.970V1  0.234
2013 Newman RH, Hu J, Rho HS, Xie Z, Woodard C, Neiswinger J, Cooper C, Shirley M, Clark HM, Hu S, Hwang W, Jeong JS, Wu G, Lin J, Gao X, et al. Construction of human activity-based phosphorylation networks. Molecular Systems Biology. 9: 655. PMID 23549483 DOI: 10.1038/Msb.2013.12  0.228
2024 Elbatsh AMO, Amin-Mansour A, Haberkorn A, Textor C, Ebel N, Renard E, Koch LM, Groenveld FC, Piquet M, Naumann U, Ruddy DA, Romanet V, Martínez Gómez JM, Shirley MD, Wipfli P, et al. INPP5A phosphatase is a synthetic lethal target in GNAQ and GNA11-mutant melanomas. Nature Cancer. PMID 38233483 DOI: 10.1038/s43018-023-00710-z  0.184
2008 McNally RJ, Rankin J, Shirley MD, Rushton SP, Pless-Mulloli T. Space-time analysis of Down syndrome: results consistent with transient pre-disposing contagious agent. International Journal of Epidemiology. 37: 1169-79. PMID 18467377 DOI: 10.1093/ije/dyn083  0.168
2021 Crowe MS, Zavorotinskaya T, Voliva CF, Shirley MD, Wang Y, Ruddy DA, Rakiec DP, Engelman JA, Stuart DD, Freeman AK. RAF-mutant melanomas differentially depend on ERK2 over ERK1 to support aberrant MAPK pathway activation and cell proliferation. Molecular Cancer Research : McR. PMID 33707308 DOI: 10.1158/1541-7786.MCR-20-1022  0.135
2012 Mill AC, Rushton SP, Shirley MD, Murray AW, Smith GC, Delahay RJ, McDonald RA. Farm-scale risk factors for bovine tuberculosis incidence in cattle herds during the Randomized Badger Culling Trial. Epidemiology and Infection. 140: 219-30. PMID 21439101 DOI: 10.1017/S0950268811000434  0.123
2001 Hale ML, Lurz PW, Shirley MD, Rushton S, Fuller RM, Wolff K. Impact of landscape management on the genetic structure of red squirrel populations. Science (New York, N.Y.). 293: 2246-8. PMID 11567136 DOI: 10.1126/science.1062574  0.099
2014 Mill AC, Rushton SP, Shirley MD, Smith GC, Mason P, Brown MA, Budge GE. Clustering, persistence and control of a pollinator brood disease: epidemiology of American foulbrood. Environmental Microbiology. 16: 3753-63. PMID 24119163 DOI: 10.1111/1462-2920.12292  0.096
2021 Wang HQ, Mulford IJ, Sharp F, Liang J, Kurtulus S, Trabucco G, Quinn DS, Longmire TA, Patel N, Patil R, Shirley MD, Chen Y, Wang H, Ruddy DA, Fabre C, et al. Inhibition of MDM2 promotes anti-tumor responses in p53 wild-type cancer cells through their interaction with the immune and stromal microenvironment. Cancer Research. PMID 33504557 DOI: 10.1158/0008-5472.CAN-20-0189  0.085
2019 Ku T, Lopresti N, Shirley M, Mori M, Marchant J, Heng X, Botta M, Summers MF, Seley-Radtke KL. Synthesis of distal and proximal fleximer base analogues and evaluation in the nucleocapsid protein of HIV-1. Bioorganic & Medicinal Chemistry. PMID 31126822 DOI: 10.1016/J.Bmc.2019.05.019  0.081
2012 Carter SP, Chambers MA, Rushton SP, Shirley MD, Schuchert P, Pietravalle S, Murray A, Rogers F, Gettinby G, Smith GC, Delahay RJ, Hewinson RG, McDonald RA. BCG vaccination reduces risk of tuberculosis infection in vaccinated badgers and unvaccinated badger cubs. Plos One. 7: e49833. PMID 23251352 DOI: 10.1371/journal.pone.0049833  0.077
2019 Hellem A, Shirley M, Schilaty N, Dahm D. Review of Shoulder Range of Motion in the Throwing Athlete: Distinguishing Normal Adaptations from Pathologic Deficits. Current Reviews in Musculoskeletal Medicine. 12: 346-355. PMID 31264172 DOI: 10.1007/S12178-019-09563-5  0.071
2014 Blain AP, Thomas MF, Shirley MD, Simmister C, Elemraid MA, Gorton R, Pearce MS, Clark JE, Rushton SP, Spencer DA. Spatial variation in the risk of hospitalization with childhood pneumonia and empyema in the North of England. Epidemiology and Infection. 142: 388-98. PMID 23657202 DOI: 10.1017/S0950268813001015  0.064
2011 Chambers MA, Rogers F, Delahay RJ, Lesellier S, Ashford R, Dalley D, Gowtage S, Davé D, Palmer S, Brewer J, Crawshaw T, Clifton-Hadley R, Carter S, Cheeseman C, Hanks C, ... ... Shirley MD, et al. Bacillus Calmette-Guérin vaccination reduces the severity and progression of tuberculosis in badgers. Proceedings. Biological Sciences / the Royal Society. 278: 1913-20. PMID 21123260 DOI: 10.1098/rspb.2010.1953  0.057
2009 Dadvand P, Rankin J, Shirley MD, Rushton S, Pless-Mulloli T. Descriptive epidemiology of congenital heart disease in Northern England. Paediatric and Perinatal Epidemiology. 23: 58-65. PMID 19228315 DOI: 10.1111/j.1365-3016.2008.00987.x  0.056
2006 Rushton SP, Lurz PW, Gurnell J, Nettleton P, Bruemmer C, Shirley MD, Sainsbury AW. Disease threats posed by alien species: the role of a poxvirus in the decline of the native red squirrel in Britain. Epidemiology and Infection. 134: 521-33. PMID 16238822 DOI: 10.1017/S0950268805005303  0.049
2005 Shirley MD, Rushton SP. Where diseases and networks collide: lessons to be learnt from a study of the 2001 foot-and-mouth disease epidemic. Epidemiology and Infection. 133: 1023-32. PMID 16274498 DOI: 10.1017/S095026880500453X  0.045
1896 SHIRLEY M. CASE OF CHRONIC NEPHRITIS IN WHICH THE SEVERE DROPSY DISAPPEARED AFTER PERSISTING FOR NEARLY TWELVE MONTHS. The Lancet. 147: 1793. DOI: 10.1016/S0140-6736(01)39079-7  0.045
2015 Vitale MG, Matsumoto H, Feinberg N, Maier S, Trupia EP, Warren S, Shirley M, Garg S, Flynn J, Sturm PF, Perez-Grueso FS, Roye DP, Skaggs DL. Paper #35 Proximal Rib vs Proximal Spine Anchors in Growing Rods: A Multicenter Prospective Cohort Study Spine Deformity. 3: 626-627. DOI: 10.1016/j.jspd.2015.09.039  0.04
2017 Carlson D, David LK, Gallagher NM, Vu MT, Shirley M, Hultman R, Wang J, Burrus C, McClung CA, Kumar S, Carin L, Mague SD, Dzirasa K. Dynamically Timed Stimulation of Corticolimbic Circuitry Activates a Stress-Compensatory Pathway. Biological Psychiatry. PMID 28728677 DOI: 10.1016/J.Biopsych.2017.06.008  0.039
2021 Pinter ZW, Mikula A, Shirley M, Xiong A, Wagner S, Elder BD, Freedman BA, Nassr A, Bydon M, Currier B, Kaye ID, Kepler C, Sebastian AS. Allograft Subsidence Decreases Postoperative Segmental Lordosis With Minimal Effect on Global Alignment Following ACDF. Global Spine Journal. 2192568220988270. PMID 33472412 DOI: 10.1177/2192568220988270  0.035
2014 Shah T, Cloke DJ, Rushton S, Shirley MD, Deehan DJ. Lower Back Symptoms in Adolescent Soccer Players: Predictors of Functional Recovery. Orthopaedic Journal of Sports Medicine. 2: 2325967114529703. PMID 26535318 DOI: 10.1177/2325967114529703  0.032
2009 Wang Z, Shirley MD, Meikle ST, Whitby RLD, Mikhalovsky SV. The surface acidity of acid oxidised multi-walled carbon nanotubes and the influence of in-situ generated fulvic acids on their stability in aqueous dispersions Carbon. 47: 73-79. DOI: 10.1016/j.carbon.2008.09.038  0.03
2012 Cloke D, Moore O, Shah T, Shab T, Rushton S, Shirley MD, Deehan DJ. Thigh muscle injuries in youth soccer: predictors of recovery. The American Journal of Sports Medicine. 40: 433-9. PMID 22223714 DOI: 10.1177/0363546511428800  0.028
2022 Pinter ZW, Mikula A, Shirley M, Xiong A, Michalopoulos G, Ghaith AK, Wagner S, Elder BD, Freedman BA, Nassr A, Bydon M, Currier B, Kaye ID, Kepler C, Sebastian AS. Risk Factors for Allograft Subsidence following ACDF. World Neurosurgery. PMID 36574570 DOI: 10.1016/j.wneu.2022.11.109  0.028
2010 Rushton SP, Shirley MD, Sheridan EA, Lanyon CV, O'Donnell AG. The transmission of nosocomial pathogens in an intensive care unit: a space-time clustering and structural equation modelling approach. Epidemiology and Infection. 138: 915-26. PMID 19814850 DOI: 10.1017/S095026880999094X  0.025
2015 Ramsay CR, Adewuyi TE, Gray J, Hislop J, Shirley MD, Jayakody S, MacLennan G, Fraser C, MacLennan S, Brazzelli M, N'Dow J, Pickard R, Robertson C, Rothnie K, Rushton SP, et al. Ablative therapy for people with localised prostate cancer: a systematic review and economic evaluation. Health Technology Assessment (Winchester, England). 19: 1-490. PMID 26140518 DOI: 10.3310/hta19490  0.024
2002 Lurz PW, Shirley MD, Shirley MD, Rushton SP. Evaluation of immunocontraception as a publicly acceptable form of vertebrate pest species control: the introduced grey squirrel in Britain as an example. Environmental Management. 30: 342-51. PMID 12148069 DOI: 10.1007/s00267-002-2686-7  0.022
2019 Hernandez CJ, Yang X, Ji G, Niu Y, Sethuraman AS, Koressel J, Shirley M, Fields MW, Chyou S, Li TM, Luna M, Callahan RL, Ross FP, Lu TT, Brito IL, et al. Disruption of the Gut Microbiome Increases the Risk of Periprosthetic Joint Infection in Mice. Clinical Orthopaedics and Related Research. PMID 31283731 DOI: 10.1097/CORR.0000000000000851  0.021
2009 Rushton SP, Humphrey TJ, Shirley MD, Bull S, Jørgensen F. Campylobacter in housed broiler chickens: a longitudinal study of risk factors. Epidemiology and Infection. 137: 1099-110. PMID 19149909 DOI: 10.1017/S095026880800188X  0.02
2003 Shirley MD. Water quality in Wyoming - The Sage Creek project Rangelands. 25: 32-35.  0.019
2014 Khan SK, Shirley MD, Glennie C, Fearon PV, Deehan DJ. Achieving best practice tariff may not reflect improved survival after hip fracture treatment. Clinical Interventions in Aging. 9: 2097-102. PMID 25489240 DOI: 10.2147/CIA.S65736  0.012
2020 Shirley M, Wanderman N, Keaveny T, Anderson P, Freedman BA. Opportunistic Computed Tomography and Spine Surgery: A Narrative Review. Global Spine Journal. 10: 919-928. PMID 32905730 DOI: 10.1177/2192568219889362  0.01
2015 Hodgson S, Lurz PW, Shirley MD, Bythell M, Rankin J. Exposure misclassification due to residential mobility during pregnancy. International Journal of Hygiene and Environmental Health. 218: 414-21. PMID 25845985 DOI: 10.1016/j.ijheh.2015.03.007  0.01
2013 Elemraid MA, Rushton SP, Shirley MD, Thomas MF, Spencer DA, Eastham KM, Hampton F, Gorton R, Pollard K, Gennery AR, Clark JE. Impact of the 7-valent pneumococcal conjugate vaccine on the incidence of childhood pneumonia. Epidemiology and Infection. 141: 1697-704. PMID 23084696 DOI: 10.1017/S0950268812002257  0.01
2012 Ramsay C, Pickard R, Robertson C, Close A, Vale L, Armstrong N, Barocas DA, Eden CG, Fraser C, Gurung T, Jenkinson D, Jia X, Lam TB, Mowatt G, Neal DE, ... ... Shirley MD, et al. Systematic review and economic modelling of the relative clinical benefit and cost-effectiveness of laparoscopic surgery and robotic surgery for removal of the prostate in men with localised prostate cancer. Health Technology Assessment (Winchester, England). 16: 1-313. PMID 23127367 DOI: 10.3310/hta16410  0.01
2007 O'Donnell AG, Young IM, Rushton SP, Shirley MD, Crawford JW. Visualization, modelling and prediction in soil microbiology. Nature Reviews. Microbiology. 5: 689-99. PMID 17676055 DOI: 10.1038/nrmicro1714  0.01
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