Aravinthan Samuel - Publications

Affiliations: 
Physics Harvard University, Cambridge, MA, United States 
Area:
C. elgans, behavior, drosophila
Website:
http://worms.physics.harvard.edu

74 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Yao M, Fan X, Yuan B, Takagi N, Liu S, Han X, Ren J, Liu J. Berberine inhibits NLRP3 Inflammasome pathway in human triple-negative breast cancer MDA-MB-231 cell. Bmc Complementary and Alternative Medicine. 19: 216. PMID 31412862 DOI: 10.1186/s12906-019-2615-4  0.36
2019 Si G, Kanwal JK, Hu Y, Tabone CJ, Baron J, Berck M, Vignoud G, Samuel ADT. Structured Odorant Response Patterns across a Complete Olfactory Receptor Neuron Population. Neuron. PMID 30683545 DOI: 10.1016/j.neuron.2018.12.030  0.68
2018 He L, Si G, Huang J, Samuel ADT, Perrimon N. Mechanical regulation of stem-cell differentiation by the stretch-activated Piezo channel. Nature. PMID 29414942 DOI: 10.1038/nature25744  0.68
2018 Hawk JD, Calvo AC, Liu P, Almoril-Porras A, Aljobeh A, Torruella-Suárez ML, Ren I, Cook N, Greenwood J, Luo L, Wang ZW, Samuel ADT, Colón-Ramos DA. Integration of Plasticity Mechanisms within a Single Sensory Neuron of C. elegans Actuates a Memory. Neuron. PMID 29307713 DOI: 10.1016/j.neuron.2017.12.027  0.88
2017 Klein M, Krivov SV, Ferrer AJ, Luo L, Samuel AD, Karplus M. Exploratory search during directed navigation in C. elegans and Drosophila larva. Elife. 6. PMID 29083306 DOI: 10.7554/eLife.30503  0.88
2017 Lim M, Chitturi J, Laskova V, Meng J, Findeis D, Wiekenberg A, Mulcahy B, Luo L, Li Y, Lu Y, Hung W, Qu Y, Ho C, Holmyard D, Ji N, ... ... Samuel AD, et al. Correction: Neuroendocrine modulation sustains the C. elegans forward motor state. Elife. 6. PMID 28271995 DOI: 10.7554/eLife.26528  0.88
2016 Lim M, Chitturi J, Laskova V, Meng J, Findeis D, Wiekenberg A, Mulcahy B, Luo L, Li Y, Lu Y, Hung W, Qu Y, Ho C, Holmyard D, Ji N, ... ... Samuel AD, et al. Neuroendocrine modulation sustains the C. elegans forward motor state. Elife. 5. PMID 27855782 DOI: 10.7554/eLife.19887  0.88
2016 Knecht ZA, Silbering AF, Ni L, Klein M, Budelli G, Bell R, Abuin L, Ferrer AJ, Samuel AD, Benton R, Garrity PA. Distinct combinations of variant ionotropic glutamate receptors mediate thermosensation and hygrosensation in Drosophila. Elife. 5. PMID 27656904 DOI: 10.7554/eLife.17879  1
2016 Berck ME, Khandelwal A, Claus L, Hernandez-Nunez L, Si G, Tabone CJ, Li F, Truman JW, Fetter RD, Louis M, Samuel AD, Cardona A. The wiring diagram of a glomerular olfactory system. Elife. 5. PMID 27177418 DOI: 10.7554/eLife.14859  1
2016 Shen Y, Wen Q, Liu H, Zhong C, Qin Y, Harris G, Kawano T, Wu M, Xu T, Samuel AD, Zhang Y. An extrasynaptic GABAergic signal modulates a pattern of forward movement in Caenorhabditis elegans. Elife. 5. PMID 27138642 DOI: 10.7554/eLife.14197  0.56
2016 Ni L, Klein M, Svec KV, Budelli G, Chang EC, Ferrer AJ, Benton R, Samuel AD, Garrity PA. The Ionotropic Receptors IR21a and IR25a mediate cool sensing in Drosophila. Elife. 5. PMID 27126188 DOI: 10.7554/eLife.13254  1
2016 van Giesen L, Hernandez-Nunez L, Delasoie-Baranek S, Colombo M, Renaud P, Bruggmann R, Benton R, Samuel AD, Sprecher SG. Erratum: Multimodal stimulus coding by a gustatory sensory neuron in Drosophila larvae. Nature Communications. 7: 11028. PMID 26972323 DOI: 10.1038/ncomms11028  0.72
2016 van Giesen L, Hernandez-Nunez L, Delasoie-Baranek S, Colombo M, Renaud P, Bruggmann R, Benton R, Samuel AD, Sprecher SG. Multimodal stimulus coding by a gustatory sensory neuron in Drosophila larvae. Nature Communications. 7: 10687. PMID 26864722 DOI: 10.1038/ncomms10687  1
2015 Venkatachalam V, Ji N, Wang X, Clark C, Mitchell JK, Klein M, Tabone CJ, Florman J, Ji H, Greenwood J, Chisholm AD, Srinivasan J, Alkema M, Zhen M, Samuel AD. Pan-neuronal imaging in roaming Caenorhabditis elegans. Proceedings of the National Academy of Sciences of the United States of America. PMID 26711989 DOI: 10.1073/pnas.1507109113  1
2015 Kain JS, Zhang S, Akhund-Zade J, Samuel AD, Klein M, de Bivort BL. Variability in thermal and phototactic preferences in Drosophila may reflect an adaptive bet-hedging strategy. Evolution; International Journal of Organic Evolution. PMID 26531165 DOI: 10.1111/evo.12813  1
2015 Basques BA, Chung SH, Lukasiewicz AM, Webb ML, Samuel AM, Bohl DD, Smith BG, Grauer JN. Predicting Short-term Morbidity in Patients Undergoing Posterior Spinal Fusion for Neuromuscular Scoliosis. Spine. PMID 26261918 DOI: 10.1097/BRS.0000000000001093  0.4
2015 Fang-Yen C, Alkema MJ, Samuel AD. Illuminating neural circuits and behaviour in Caenorhabditis elegans with optogenetics. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 370: 20140212. PMID 26240427 DOI: 10.1098/rstb.2014.0212  1
2015 Hernandez-Nunez L, Belina J, Klein M, Si G, Claus L, Carlson JR, Samuel AD. Reverse-correlation analysis of navigation dynamics in Drosophila larva using optogenetics. Elife. 4. PMID 25942453 DOI: 10.7554/eLife.06225  0.72
2015 Zhen M, Samuel AD. C. elegans locomotion: small circuits, complex functions. Current Opinion in Neurobiology. 33: 117-126. PMID 25845627 DOI: 10.1016/j.conb.2015.03.009  1
2015 Klein M, Afonso B, Vonner AJ, Hernandez-Nunez L, Berck M, Tabone CJ, Kane EA, Pieribone VA, Nitabach MN, Cardona A, Zlatic M, Sprecher SG, Gershow M, Garrity PA, Samuel AD. Sensory determinants of behavioral dynamics in Drosophila thermotaxis. Proceedings of the National Academy of Sciences of the United States of America. 112: E220-9. PMID 25550513 DOI: 10.1073/pnas.1416212112  1
2015 Hernandez-Nunez L, Belina J, Klein M, Si G, Claus L, Carlson JR, Samuel ADT. Reverse-correlation analysis of navigation dynamics in Drosophila larva using optogenetics Elife. 4. DOI: 10.7554/eLife.06225  1
2014 Luo L, Wen Q, Ren J, Hendricks M, Gershow M, Qin Y, Greenwood J, Soucy ER, Klein M, Smith-Parker HK, Calvo AC, Colón-Ramos DA, Samuel AD, Zhang Y. Dynamic encoding of perception, memory, and movement in a C. elegans chemotaxis circuit. Neuron. 82: 1115-28. PMID 24908490 DOI: 10.1016/j.neuron.2014.05.010  1
2014 Luo L, Cook N, Venkatachalam V, Martinez-Velazquez LA, Zhang X, Calvo AC, Hawk J, MacInnis BL, Frank M, Ng JH, Klein M, Gershow M, Hammarlund M, Goodman MB, Colón-Ramos DA, ... ... Samuel AD, et al. Bidirectional thermotaxis in Caenorhabditis elegans is mediated by distinct sensorimotor strategies driven by the AFD thermosensory neurons. Proceedings of the National Academy of Sciences of the United States of America. 111: 2776-81. PMID 24550307 DOI: 10.1073/pnas.1315205111  1
2013 Williams DC, Bejjani RE, Ramirez PM, Coakley S, Kim SA, Lee H, Wen Q, Samuel A, Lu H, Hilliard MA, Hammarlund M. Rapid and permanent neuronal inactivation in vivo via subcellular generation of reactive oxygen with the use of KillerRed. Cell Reports. 5: 553-63. PMID 24209746 DOI: 10.1016/j.celrep.2013.09.023  0.52
2013 Kane EA, Gershow M, Afonso B, Larderet I, Klein M, Carter AR, de Bivort BL, Sprecher SG, Samuel AD. Sensorimotor structure of Drosophila larva phototaxis. Proceedings of the National Academy of Sciences of the United States of America. 110: E3868-77. PMID 24043822 DOI: 10.1073/pnas.1215295110  1
2013 Reina A, Subramaniam AB, Laromaine A, Samuel AD, Whitesides GM. Shifts in the distribution of mass densities is a signature of caloric restriction in Caenorhabditis elegans. Plos One. 8: e69651. PMID 23922767 DOI: 10.1371/journal.pone.0069651  1
2013 Smith HK, Luo L, O'Halloran D, Guo D, Huang XY, Samuel AD, Hobert O. Defining specificity determinants of cGMP mediated gustatory sensory transduction in Caenorhabditis elegans. Genetics. 194: 885-901. PMID 23695300 DOI: 10.1534/genetics.113.152660  1
2013 Mathew D, Martelli C, Kelley-Swift E, Brusalis C, Gershow M, Samuel AD, Emonet T, Carlson JR. Functional diversity among sensory receptors in a Drosophila olfactory circuit. Proceedings of the National Academy of Sciences of the United States of America. 110: E2134-43. PMID 23690583 DOI: 10.1073/pnas.1306976110  1
2013 Donnelly JL, Clark CM, Leifer AM, Pirri JK, Haburcak M, Francis MM, Samuel AD, Alkema MJ. Monoaminergic orchestration of motor programs in a complex C. elegans behavior. Plos Biology. 11: e1001529. PMID 23565061 DOI: 10.1371/journal.pbio.1001529  1
2012 Wen Q, Po MD, Hulme E, Chen S, Liu X, Kwok SW, Gershow M, Leifer AM, Butler V, Fang-Yen C, Kawano T, Schafer WR, Whitesides G, Wyart M, Chklovskii DB, ... ... Samuel AD, et al. Proprioceptive coupling within motor neurons drives C. elegans forward locomotion. Neuron. 76: 750-61. PMID 23177960 DOI: 10.1016/j.neuron.2012.08.039  1
2012 Stavoe AK, Nelson JC, Martínez-Velázquez LA, Klein M, Samuel AD, Colón-Ramos DA. Synaptic vesicle clustering requires a distinct MIG-10/Lamellipodin isoform and ABI-1 downstream from Netrin. Genes & Development. 26: 2206-21. PMID 23028145 DOI: 10.1101/gad.193409.112  1
2012 Omura DT, Clark DA, Samuel AD, Horvitz HR. Dopamine signaling is essential for precise rates of locomotion by C. elegans. Plos One. 7: e38649. PMID 22719914 DOI: 10.1371/journal.pone.0038649  0.92
2012 Pinan-Lucarre B, Gabel CV, Reina CP, Hulme SE, Shevkoplyas SS, Slone RD, Xue J, Qiao Y, Weisberg S, Roodhouse K, Sun L, Whitesides GM, Samuel A, Driscoll M. The core apoptotic executioner proteins CED-3 and CED-4 promote initiation of neuronal regeneration in Caenorhabditis elegans. Plos Biology. 10: e1001331. PMID 22629231 DOI: 10.1371/journal.pbio.1001331  1
2012 Gershow M, Berck M, Mathew D, Luo L, Kane EA, Carlson JR, Samuel AD. Controlling airborne cues to study small animal navigation. Nature Methods. 9: 290-6. PMID 22245808 DOI: 10.1038/nmeth.1853  1
2012 Fang-Yen C, Gabel CV, Samuel AD, Bargmann CI, Avery L. Laser microsurgery in Caenorhabditis elegans. Methods in Cell Biology. 107: 177-206. PMID 22226524 DOI: 10.1016/B978-0-12-394620-1.00006-0  1
2011 Lahiri S, Shen K, Klein M, Tang A, Kane E, Gershow M, Garrity P, Samuel AD. Two alternating motor programs drive navigation in Drosophila larva. Plos One. 6: e23180. PMID 21858019 DOI: 10.1371/journal.pone.0023180  1
2011 Leifer AM, Fang-Yen C, Gershow M, Alkema MJ, Samuel AD. Optogenetic manipulation of neural activity in freely moving Caenorhabditis elegans. Nature Methods. 8: 147-52. PMID 21240279 DOI: 10.1038/nmeth.1554  1
2010 Ha HI, Hendricks M, Shen Y, Gabel CV, Fang-Yen C, Qin Y, Colón-Ramos D, Shen K, Samuel AD, Zhang Y. Functional organization of a neural network for aversive olfactory learning in Caenorhabditis elegans. Neuron. 68: 1173-86. PMID 21172617 DOI: 10.1016/j.neuron.2010.11.025  1
2010 Fang-Yen C, Wyart M, Xie J, Kawai R, Kodger T, Chen S, Wen Q, Samuel AD. Biomechanical analysis of gait adaptation in the nematode Caenorhabditis elegans. Proceedings of the National Academy of Sciences of the United States of America. 107: 20323-8. PMID 21048086 DOI: 10.1073/pnas.1003016107  1
2010 Garrity PA, Goodman MB, Samuel AD, Sengupta P. Running hot and cold: behavioral strategies, neural circuits, and the molecular machinery for thermotaxis in C. elegans and Drosophila. Genes & Development. 24: 2365-82. PMID 21041406 DOI: 10.1101/gad.1953710  1
2010 Luo L, Gershow M, Rosenzweig M, Kang K, Fang-Yen C, Garrity PA, Samuel AD. Navigational decision making in Drosophila thermotaxis. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 30: 4261-72. PMID 20335462 DOI: 10.1523/JNEUROSCI.4090-09.2010  1
2009 Fang-Yen C, Avery L, Samuel AD. Two size-selective mechanisms specifically trap bacteria-sized food particles in Caenorhabditis elegans. Proceedings of the National Academy of Sciences of the United States of America. 106: 20093-6. PMID 19903886 DOI: 10.1073/pnas.0904036106  1
2009 Sengupta P, Samuel AD. Caenorhabditis elegans: a model system for systems neuroscience. Current Opinion in Neurobiology. 19: 637-43. PMID 19896359 DOI: 10.1016/j.conb.2009.09.009  1
2009 Srivastava N, Clark DA, Samuel AD. Temporal analysis of stochastic turning behavior of swimming C. elegans. Journal of Neurophysiology. 102: 1172-9. PMID 19535479 DOI: 10.1152/jn.90952.2008  1
2008 Jung S, Lee S, Samuel A. Swimming C. elegans in a wet granular medium Chaos. 18. PMID 19123606 DOI: 10.1063/1.2996827  1
2008 Zhang M, Chung SH, Fang-Yen C, Craig C, Kerr RA, Suzuki H, Samuel AD, Mazur E, Schafer WR. A self-regulating feed-forward circuit controlling C. elegans egg-laying behavior. Current Biology : Cb. 18: 1445-55. PMID 18818084 DOI: 10.1016/j.cub.2008.08.047  1
2008 Biron D, Wasserman S, Thomas JH, Samuel AD, Sengupta P. An olfactory neuron responds stochastically to temperature and modulates Caenorhabditis elegans thermotactic behavior. Proceedings of the National Academy of Sciences of the United States of America. 105: 11002-7. PMID 18667708 DOI: 10.1073/pnas.0805004105  1
2008 Hulme SE, Shevkoplyas SS, Samuel A. Microfluidics: streamlining discovery in worm biology. Nature Methods. 5: 589-90. PMID 18587316 DOI: 10.1038/nmeth0708-589  1
2008 Luo L, Gabel CV, Ha HI, Zhang Y, Samuel AD. Olfactory behavior of swimming C. elegans analyzed by measuring motile responses to temporal variations of odorants. Journal of Neurophysiology. 99: 2617-25. PMID 18367700 DOI: 10.1152/jn.00053.2008  1
2008 Gabel CV, Antoine F, Antonie F, Chuang CF, Samuel AD, Chang C. Distinct cellular and molecular mechanisms mediate initial axon development and adult-stage axon regeneration in C. elegans. Development (Cambridge, England). 135: 1129-36. PMID 18296652 DOI: 10.1242/dev.013995  1
2007 Chi CA, Clark DA, Lee S, Biron D, Luo L, Gabel CV, Brown J, Sengupta P, Samuel AD. Temperature and food mediate long-term thermotactic behavioral plasticity by association-independent mechanisms in C. elegans. The Journal of Experimental Biology. 210: 4043-52. PMID 17981872 DOI: 10.1242/jeb.006551  1
2007 Gabel CV, Gabel H, Pavlichin D, Kao A, Clark DA, Samuel AD. Neural circuits mediate electrosensory behavior in Caenorhabditis elegans. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 27: 7586-96. PMID 17626220 DOI: 10.1523/JNEUROSCI.0775-07.2007  1
2007 Korta J, Clark DA, Gabel CV, Mahadevan L, Samuel AD. Mechanosensation and mechanical load modulate the locomotory gait of swimming C. elegans. The Journal of Experimental Biology. 210: 2383-9. PMID 17575043 DOI: 10.1242/jeb.004572  1
2007 Clark DA, Gabel CV, Gabel H, Samuel AD. Temporal activity patterns in thermosensory neurons of freely moving Caenorhabditis elegans encode spatial thermal gradients. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 27: 6083-90. PMID 17553981 DOI: 10.1523/JNEUROSCI.1032-07.2007  1
2007 Clark DA, Gabel CV, Lee TM, Samuel AD. Short-term adaptation and temporal processing in the cryophilic response of Caenorhabditis elegans. Journal of Neurophysiology. 97: 1903-10. PMID 17151225 DOI: 10.1152/jn.00892.2006  1
2006 Luo L, Clark DA, Biron D, Mahadevan L, Samuel AD. Sensorimotor control during isothermal tracking in Caenorhabditis elegans. The Journal of Experimental Biology. 209: 4652-62. PMID 17114399 DOI: 10.1242/jeb.02590  1
2006 Biron D, Shibuya M, Gabel C, Wasserman SM, Clark DA, Brown A, Sengupta P, Samuel AD. A diacylglycerol kinase modulates long-term thermotactic behavioral plasticity in C. elegans. Nature Neuroscience. 9: 1499-505. PMID 17086178 DOI: 10.1038/nn1796  1
2006 Clark DA, Biron D, Sengupta P, Samuel AD. The AFD sensory neurons encode multiple functions underlying thermotactic behavior in Caenorhabditis elegans. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 26: 7444-51. PMID 16837592 DOI: 10.1523/JNEUROSCI.1137-06.2006  1
2006 Chung SH, Clark DA, Gabel CV, Mazur E, Samuel AD. The role of the AFD neuron in C. elegans thermotaxis analyzed using femtosecond laser ablation. Bmc Neuroscience. 7: 30. PMID 16600041 DOI: 10.1186/1471-2202-7-30  1
2006 Samuel ADT, Chung SH, Clark DA, Gabel CV, Chang C, Murthy V, Mazur E. Femtosecond laser dissection in C. elegans neural circuits Proceedings of Spie - the International Society For Optical Engineering. 6108. DOI: 10.1117/12.657396  1
2005 Samuel AD, Sengupta P. Sensorimotor integration: locating locomotion in neural circuits. Current Biology : Cb. 15: R341-3. PMID 15886093 DOI: 10.1016/j.cub.2005.04.021  1
2004 Colosimo ME, Brown A, Mukhopadhyay S, Gabel C, Lanjuin AE, Samuel AD, Sengupta P. Identification of thermosensory and olfactory neuron-specific genes via expression profiling of single neuron types. Current Biology : Cb. 14: 2245-51. PMID 15620651 DOI: 10.1016/j.cub.2004.12.030  1
2003 Samuel AD, Silva RA, Murthy VN. Synaptic activity of the AFD neuron in Caenorhabditis elegans correlates with thermotactic memory. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 23: 373-6. PMID 12533596  1
2002 Ryu WS, Samuel AD. Thermotaxis in Caenorhabditis elegans analyzed by measuring responses to defined Thermal stimuli. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 22: 5727-33. PMID 12097525  1
2001 Samuel AD, Murthy VN, Hengartner MO. Calcium dynamics during fertilization in C. elegans. Bmc Developmental Biology. 1: 8. PMID 11346453  1
2001 Samuel AD, Petersen JD, Reese TS. Envelope structure of Synechococcus sp. WH8113, a nonflagellated swimming cyanobacterium. Bmc Microbiology. 1: 4. PMID 11329361 DOI: 10.1186/1471-2180-1-1  1
1999 Samuel AD, Pitta TP, Ryu WS, Danese PN, Leung EC, Berg HC. Flagellar determinants of bacterial sensitivity to chi-phage. Proceedings of the National Academy of Sciences of the United States of America. 96: 9863-6. PMID 10449785 DOI: 10.1073/pnas.96.17.9863  1
1999 Turner L, Samuel AD, Stern AS, Berg HC. Temperature dependence of switching of the bacterial flagellar motor by the protein CheY(13DK106YW). Biophysical Journal. 77: 597-603. PMID 10388784 DOI: 10.1016/S0006-3495(99)76916-X  1
1998 Mahadevan L, Ryu WS, Samuel ADT. Fluid 'rope trick' investigated Nature. 392: 140.  1
1997 Samuel ADT, Berg HC. Statistical kinetics of the bacterial flagellar motor Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics. 55: 7801-7804.  1
1996 Samuel AD, Berg HC. Torque-generating units of the bacterial flagellar motor step independently. Biophysical Journal. 71: 918-23. PMID 8842231 DOI: 10.1016/S0006-3495(96)79295-0  1
1996 Ehlers KM, Samuel AD, Berg HC, Montgomery R. Do cyanobacteria swim using traveling surface waves? Proceedings of the National Academy of Sciences of the United States of America. 93: 8340-3. PMID 8710872 DOI: 10.1073/pnas.93.16.8340  1
1996 Stone HA, Samuel ADT. Propulsion of microorganisms by surface distortions Physical Review Letters. 77: 4102-4104.  1
1995 Samuel AD, Berg HC. Fluctuation analysis of rotational speeds of the bacterial flagellar motor. Proceedings of the National Academy of Sciences of the United States of America. 92: 3502-6. PMID 7724590  1
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