| Year |
Citation |
Score |
| 2021 |
Lei L, Burton ZF. Early Evolution of Transcription Systems and Divergence of Archaea and Bacteria. Frontiers in Molecular Biosciences. 8: 651134. PMID 34026831 DOI: 10.3389/fmolb.2021.651134 |
0.429 |
|
| 2020 |
Burton ZF. The 3-Minihelix tRNA Evolution Theorem. Journal of Molecular Evolution. PMID 32020280 DOI: 10.1007/S00239-020-09928-2 |
0.316 |
|
| 2019 |
Kim Y, Opron K, Burton ZF. A tRNA- and Anticodon-Centric View of the Evolution of Aminoacyl-tRNA Synthetases, tRNAomes, and the Genetic Code. Life (Basel, Switzerland). 9. PMID 31060233 DOI: 10.3390/Life9020037 |
0.33 |
|
| 2018 |
Opron K, Burton ZF. Ribosome Structure, Function, and Early Evolution. International Journal of Molecular Sciences. 20. PMID 30583477 DOI: 10.3390/Ijms20010040 |
0.397 |
|
| 2018 |
Kim Y, Kowiatek B, Opron K, Burton ZF. Type-II tRNAs and Evolution of Translation Systems and the Genetic Code. International Journal of Molecular Sciences. 19. PMID 30360357 DOI: 10.3390/Ijms19103275 |
0.348 |
|
| 2018 |
Kim Y, Benning N, Pham K, Baghdadi A, Caruso G, Colligan M, Grayson A, Hurley A, Ignatoski N, Mcclure S, Mckaig K, Neag E, Showers C, Tangalos A, Vanells J, ... ... Burton ZF, et al. Homology threading to generate RNA polymerase structures. Protein Expression and Purification. PMID 29444461 DOI: 10.1016/J.Pep.2018.02.002 |
0.392 |
|
| 2017 |
Nedialkov YA, Opron K, Caudill HL, Assaf F, Anderson AJ, Cukier RI, Wei G, Burton ZF. Hinge action versus grip in translocation by RNA polymerase. Transcription. e1330179. PMID 28853995 DOI: 10.1080/21541264.2017.1330179 |
0.473 |
|
| 2016 |
Opron K, Xia K, Burton Z, Wei GW. Flexibility-rigidity index for protein-nucleic acid flexibility and fluctuation analysis. Journal of Computational Chemistry. PMID 26927815 DOI: 10.1002/Jcc.24320 |
0.379 |
|
| 2016 |
Burton ZF, Opron K, Wei G, Geiger JH. A model for genesis of transcription systems. Transcription. 0. PMID 26735411 DOI: 10.1080/21541264.2015.1128518 |
0.43 |
|
| 2015 |
Feig M, Wang B, Sharma M, Burton Z, Opron K, Cukier R, Predeus A, Kovacs N, Law S, Mukherjee S. 10 How is fidelity maintained in nucleic acids? Two tales in DNA repair and DNA transcription from computer simulations. Journal of Biomolecular Structure & Dynamics. 33: 6-7. PMID 26103221 DOI: 10.1080/07391102.2015.1032625 |
0.329 |
|
| 2015 |
Wang B, Opron K, Burton ZF, Cukier RI, Feig M. Five checkpoints maintaining the fidelity of transcription by RNA polymerases in structural and energetic details. Nucleic Acids Research. 43: 1133-46. PMID 25550432 DOI: 10.1093/Nar/Gku1370 |
0.569 |
|
| 2014 |
Burton ZF. The Old and New Testaments of gene regulation. Evolution of multi-subunit RNA polymerases and co-evolution of eukaryote complexity with the RNAP II CTD. Transcription. 5: e28674. PMID 25764332 DOI: 10.4161/trns.28674 |
0.458 |
|
| 2014 |
Burton SP, Burton ZF. The σ enigma: bacterial σ factors, archaeal TFB and eukaryotic TFIIB are homologs. Transcription. 5: e967599. PMID 25483602 DOI: 10.4161/21541264.2014.967599 |
0.367 |
|
| 2014 |
Burton ZF. The Old and New Testaments of gene regulation: Evolution of multi-subunit RNA polymerases and co-evolution of eukaryote complexity with the RNAP II CTD. Transcription. 5. PMID 24802897 |
0.436 |
|
| 2013 |
Kireeva ML, Kashlev M, Burton ZF. RNA polymerase structure, function, regulation, dynamics, fidelity, and roles in gene expression. Chemical Reviews. 113: 8325-30. PMID 24219496 DOI: 10.1021/Cr400436M |
0.44 |
|
| 2013 |
Wang B, Feig M, Cukier RI, Burton ZF. Computational simulation strategies for analysis of multisubunit RNA polymerases. Chemical Reviews. 113: 8546-66. PMID 23987500 DOI: 10.1021/Cr400046X |
0.363 |
|
| 2013 |
Wang B, Predeus AV, Burton ZF, Feig M. Energetic and structural details of the trigger-loop closing transition in RNA polymerase II. Biophysical Journal. 105: 767-75. PMID 23931324 DOI: 10.1016/J.Bpj.2013.05.060 |
0.463 |
|
| 2013 |
Nedialkov YA, Burton ZF. Translocation and fidelity of Escherichia coli RNA polymerase. Transcription. 4: 136-43. PMID 23863783 |
0.438 |
|
| 2013 |
Nedialkov YA, Opron K, Assaf F, Artsimovitch I, Kireeva ML, Kashlev M, Cukier RI, Nudler E, Burton ZF. The RNA polymerase bridge helix YFI motif in catalysis, fidelity and translocation. Biochimica Et Biophysica Acta. 1829: 187-98. PMID 23202476 DOI: 10.1016/J.Bbagrm.2012.11.005 |
0.5 |
|
| 2012 |
Nedialkov YA, Nudler E, Burton ZF. RNA polymerase stalls in a post-translocated register and can hyper-translocate. Transcription. 3: 260-9. PMID 23132506 DOI: 10.4161/trns.22307 |
0.44 |
|
| 2012 |
Kireeva ML, Opron K, Seibold SA, Domecq C, Cukier RI, Coulombe B, Kashlev M, Burton ZF. Molecular dynamics and mutational analysis of the catalytic and translocation cycle of RNA polymerase. Bmc Biophysics. 5: 11. PMID 22676913 DOI: 10.1186/2046-1682-5-11 |
0.525 |
|
| 2011 |
Kireeva ML, Domecq C, Coulombe B, Burton ZF, Kashlev M. Interaction of RNA polymerase II fork loop 2 with downstream non-template DNA regulates transcription elongation. The Journal of Biological Chemistry. 286: 30898-910. PMID 21730074 DOI: 10.1074/Jbc.M111.260844 |
0.527 |
|
| 2010 |
Feig M, Burton ZF. RNA polymerase II with open and closed trigger loops: active site dynamics and nucleic acid translocation. Biophysical Journal. 99: 2577-86. PMID 20959099 DOI: 10.1016/J.Bpj.2010.08.010 |
0.581 |
|
| 2010 |
Seibold SA, Singh BN, Zhang C, Kireeva M, Domecq C, Bouchard A, Nazione AM, Feig M, Cukier RI, Coulombe B, Kashlev M, Hampsey M, Burton ZF. Conformational coupling, bridge helix dynamics and active site dehydration in catalysis by RNA polymerase. Biochimica Et Biophysica Acta. 1799: 575-87. PMID 20478425 DOI: 10.1016/J.Bbagrm.2010.05.002 |
0.457 |
|
| 2010 |
Kireeva M, Kashlev M, Burton ZF. Translocation by multi-subunit RNA polymerases. Biochimica Et Biophysica Acta. 1799: 389-401. PMID 20097318 DOI: 10.1016/J.Bbagrm.2010.01.007 |
0.506 |
|
| 2010 |
Feig M, Burton ZF. RNA polymerase II flexibility during translocation from normal mode analysis. Proteins. 78: 434-46. PMID 19714773 DOI: 10.1002/Prot.22560 |
0.491 |
|
| 2010 |
Domecq C, Kireeva M, Archambault J, Kashlev M, Coulombe B, Burton ZF. Site-directed mutagenesis, purification and assay of Saccharomyces cerevisiae RNA polymerase II. Protein Expression and Purification. 69: 83-90. PMID 19567268 DOI: 10.1016/J.Pep.2009.06.016 |
0.501 |
|
| 2009 |
Thompson NE, Glaser BT, Foley KM, Burton ZF, Burgess RR. Minimal promoter systems reveal the importance of conserved residues in the B-finger of human transcription factor IIB. The Journal of Biological Chemistry. 284: 24754-66. PMID 19590095 DOI: 10.1074/Jbc.M109.030486 |
0.371 |
|
| 2009 |
Kireeva M, Nedialkov YA, Gong XQ, Zhang C, Xiong Y, Moon W, Burton ZF, Kashlev M. Millisecond phase kinetic analysis of elongation catalyzed by human, yeast, and Escherichia coli RNA polymerase. Methods (San Diego, Calif.). 48: 333-45. PMID 19398005 DOI: 10.1016/J.Ymeth.2009.04.008 |
0.63 |
|
| 2008 |
Kireeva ML, Nedialkov YA, Cremona GH, Purtov YA, Lubkowska L, Malagon F, Burton ZF, Strathern JN, Kashlev M. Transient reversal of RNA polymerase II active site closing controls fidelity of transcription elongation. Molecular Cell. 30: 557-66. PMID 18538654 DOI: 10.1016/J.Molcel.2008.04.017 |
0.6 |
|
| 2007 |
Xiong Y, Burton ZF. A tunable ratchet driving human RNA polymerase II translocation adjusted by accurately templated nucleoside triphosphates loaded at downstream sites and by elongation factors. The Journal of Biological Chemistry. 282: 36582-92. PMID 17875640 DOI: 10.1074/Jbc.M707014200 |
0.68 |
|
| 2005 |
Burton ZF, Feig M, Gong XQ, Zhang C, Nedialkov YA, Xiong Y. NTP-driven translocation and regulation of downstream template opening by multi-subunit RNA polymerases. Biochemistry and Cell Biology = Biochimie Et Biologie Cellulaire. 83: 486-96. PMID 16094452 DOI: 10.1139/O05-059 |
0.666 |
|
| 2005 |
Gong XQ, Zhang C, Feig M, Burton ZF. Dynamic error correction and regulation of downstream bubble opening by human RNA polymerase II. Molecular Cell. 18: 461-70. PMID 15893729 DOI: 10.1016/J.Molcel.2005.04.011 |
0.528 |
|
| 2005 |
Zhang C, Zobeck KL, Burton ZF. Human RNA polymerase II elongation in slow motion: role of the TFIIF RAP74 alpha1 helix in nucleoside triphosphate-driven translocation. Molecular and Cellular Biology. 25: 3583-95. PMID 15831464 DOI: 10.1128/Mcb.25.9.3583-3595.2005 |
0.452 |
|
| 2004 |
Zhang C, Burton ZF. Transcription factors IIF and IIS and nucleoside triphosphate substrates as dynamic probes of the human RNA polymerase II mechanism. Journal of Molecular Biology. 342: 1085-99. PMID 15351637 DOI: 10.1016/J.Jmb.2004.07.070 |
0.582 |
|
| 2004 |
Gong XQ, Nedialkov YA, Burton ZF. Alpha-amanitin blocks translocation by human RNA polymerase II. The Journal of Biological Chemistry. 279: 27422-7. PMID 15096519 DOI: 10.1074/Jbc.M402163200 |
0.553 |
|
| 2004 |
Moon WJ, Apostol JA, McBride AJ, Shukla LI, Dvir A, Burton ZF. Efficient production of recombinant human transcription factor IIE. Protein Expression and Purification. 34: 317-23. PMID 15003267 DOI: 10.1016/J.Pep.2003.12.007 |
0.432 |
|
| 2003 |
Nedialkov YA, Gong XQ, Yamaguchi Y, Handa H, Burton ZF. Assay of transient state kinetics of RNA polymerase II elongation. Methods in Enzymology. 371: 252-64. PMID 14712705 DOI: 10.1016/S0076-6879(03)71018-0 |
0.542 |
|
| 2003 |
Zhang C, Yan H, Burton ZF. Combinatorial control of human RNA polymerase II (RNAP II) pausing and transcript cleavage by transcription factor IIF, hepatitis delta antigen, and stimulatory factor II. The Journal of Biological Chemistry. 278: 50101-11. PMID 14506279 DOI: 10.1074/Jbc.M307590200 |
0.513 |
|
| 2003 |
Nedialkov YA, Gong XQ, Hovde SL, Yamaguchi Y, Handa H, Geiger JH, Yan H, Burton ZF. NTP-driven translocation by human RNA polymerase II. The Journal of Biological Chemistry. 278: 18303-12. PMID 12637520 DOI: 10.1074/Jbc.M301103200 |
0.458 |
|
| 2002 |
Funk JD, Nedialkov YA, Xu D, Burton ZF. A key role for the alpha 1 helix of human RAP74 in the initiation and elongation of RNA chains. The Journal of Biological Chemistry. 277: 46998-7003. PMID 12354769 DOI: 10.1074/Jbc.M206249200 |
0.468 |
|
| 2001 |
Langelier MF, Forget D, Rojas A, Porlier Y, Burton ZF, Coulombe B. Structural and Functional Interactions of Transcription Factor (TF) IIA with TFIIE and TFIIF in Transcription Initiation by RNA Polymerase II Journal of Biological Chemistry. 276: 38652-38657. PMID 11509574 DOI: 10.1074/Jbc.M106422200 |
0.552 |
|
| 1999 |
Lei L, Ren D, Burton ZF. The RAP74 subunit of human transcription factor IIF has similar roles in initiation and elongation Molecular and Cellular Biology. 19: 8372-8382. PMID 10567562 DOI: 10.1128/Mcb.19.12.8372 |
0.615 |
|
| 1999 |
Ren D, Lei L, Burton ZF. A region within the RAP74 subunit of human transcription factor IIF is critical for initiation but dispensable for complex assembly Molecular and Cellular Biology. 19: 7377-7387. PMID 10523626 DOI: 10.1128/Mcb.19.11.7377 |
0.528 |
|
| 1999 |
Coulombe B, Burton ZF. DNA bending and wrapping around RNA polymerase: A 'revolutionary' model describing transcriptional mechanisms Microbiology and Molecular Biology Reviews. 63: 457-478. PMID 10357858 DOI: 10.1128/Mmbr.63.2.457-478.1999 |
0.582 |
|
| 1998 |
Robert F, Douziech M, Forget D, Egly JM, Greenblatt J, Burton ZF, Coulombe B. Wrapping of promoter DNA around the RNA polymerase II initiation complex induced by TFIIF Molecular Cell. 2: 341-351. PMID 9774972 DOI: 10.1016/S1097-2765(00)80278-6 |
0.552 |
|
| 1998 |
Lei L, Ren D, Finkelstein A, Burton ZF. Functions of the N- and C-terminal domains of human RAP74 in transcriptional initiation, elongation, and recycling of RNA polymerase II. Molecular and Cellular Biology. 18: 2130-42. PMID 9528785 DOI: 10.1128/Mcb.18.4.2130 |
0.522 |
|
| 1997 |
Forget D, Robert F, Grondin G, Burton ZF, Greenblatt J, Coulombe B. RAP74 induces promoter contacts by RNA polymerase II upstream and downstream of a DNA bend centered on the TATA box Proceedings of the National Academy of Sciences of the United States of America. 94: 7150-7155. PMID 9207059 DOI: 10.1073/Pnas.94.14.7150 |
0.555 |
|
| 1997 |
Shi X, Chang M, Wolf AJ, Chang CH, Frazer-Abel AA, Wade PA, Burton ZF, Jaehning JA. Cdc73p and Paf1p are found in a novel RNA polymerase II-containing complex distinct from the Srbp-containing holoenzyme. Molecular and Cellular Biology. 17: 1160-9. PMID 9032243 DOI: 10.1128/Mcb.17.3.1160 |
0.496 |
|
| 1996 |
Wade PA, Werel W, Fentzke RC, Thompson NE, Leykam JF, Burgess RR, Jaehning JA, Burton ZF. A novel collection of accessory factors associated with yeast RNA polymerase II. Protein Expression and Purification. 8: 85-90. PMID 8812838 DOI: 10.1006/Prep.1996.0077 |
0.538 |
|
| 1996 |
Fang SM, Burton ZF. RNA polymerase II-associated protein (RAP) 74 binds transcription factor (TF) IIB and blocks TFIIB-RAP30 binding Journal of Biological Chemistry. 271: 11703-11709. PMID 8662660 DOI: 10.1074/Jbc.271.20.11703 |
0.461 |
|
| 1996 |
Shi X, Finkelstein A, Wolf AJ, Wade PA, Burton ZF, Jaehning JA. Paf1p, an RNA polymerase II-associated factor in Saccharomyces cerevisiae, may have both positive and negative roles in transcription. Molecular and Cellular Biology. 16: 669-76. PMID 8552095 DOI: 10.1128/Mcb.16.2.669 |
0.438 |
|
| 1995 |
Chambers RS, Bo Qing Wang, Burton ZF, Dahmus ME. The activity of COOH-terminal domain phosphatase is regulated by a docking site on RNA polymerase II and by the general transcription factors IIF and IIB Journal of Biological Chemistry. 270: 14962-14969. PMID 7797476 DOI: 10.1074/Jbc.270.25.14962 |
0.546 |
|
| 1995 |
Bo Qing Wang, Burton ZF. Functional domains of human RAP74 including a masked polymerase binding domain Journal of Biological Chemistry. 270: 27035-27044. PMID 7592953 DOI: 10.1074/Jbc.270.45.27035 |
0.477 |
|
| 1994 |
Kephart DD, Wang BQ, Burton ZF, Price DH. Functional analysis of Drosophila factor 5 (TFIIF), a general transcription factor Journal of Biological Chemistry. 269: 13536-13543. PMID 8175788 |
0.489 |
|
| 1994 |
Wang BQ, Lei L, Burton ZF. Importance of Codon Preference for Production of Human RAP74 and Reconstitution of the RAP30/74 Complex Protein Expression and Purification. 5: 476-485. PMID 7827505 DOI: 10.1006/Prep.1994.1067 |
0.406 |
|
| 1993 |
Kephart DD, Price MP, Burton ZF, Finkelstein A, Greenblatt J, Price DH. Cloning of a Drosophila cDNA with sequence similarity to human transcription factor RAP74. Nucleic Acids Research. 21: 1319. PMID 8464716 DOI: 10.1093/Nar/21.5.1319 |
0.335 |
|
| 1993 |
Wang BQ, Kostrub CF, Finkelstein A, Burton ZF. Production of human RAP30 and RAP74 in bacterial cells. Protein Expression and Purification. 4: 207-14. PMID 8390879 DOI: 10.1006/Prep.1993.1027 |
0.474 |
|
| 1993 |
Chang C, Kostrub CF, Burton ZF. RAP30/74 (transcription factor IIF) is required for promoter escape by RNA polymerase II. The Journal of Biological Chemistry. 268: 20482-9. PMID 8376403 |
0.478 |
|
| 1992 |
Finkelstein A, Kostrub CF, Li J, Chavez DP, Wang BQ, Fang SM, Greenblatt J, Burton ZF. A cDNA encoding RAP74, a general initiation factor for transcription by RNA polymerase II. Nature. 355: 464-7. PMID 1734284 DOI: 10.1038/355464A0 |
0.611 |
|
| 1991 |
Flores V, Lu H, Killeen M, Greenblatt J, Burton ZF, Reinberg D. The small subunit of transcription factor IIF recruits RNA polymerase II into the preinitiation complex Proceedings of the National Academy of Sciences of the United States of America. 88: 9999-10003. PMID 1946469 DOI: 10.1073/Pnas.88.22.9999 |
0.591 |
|
| 1989 |
Sopta M, Burton ZF, Greenblatt J. Structure and associated DNA-helicase activity of a general transcription initiation factor that binds to RNA polymerase II Nature. 341: 410-414. PMID 2477704 DOI: 10.1038/341410A0 |
0.569 |
|
| 1988 |
Burton ZF, Killeen M, Sopta M, Ortolan LG, Greenblatt J. RAP30/74: A general initiation factor that binds to RNA polymerase II Molecular and Cellular Biology. 8: 1602-1613. PMID 3380090 DOI: 10.1128/Mcb.8.4.1602 |
0.51 |
|
| 1986 |
Burton ZF, Ortolan LG, Greenblatt J. Proteins that bind to RNA polymerase II are required for accurate initiation of transcription at the adenovirus 2 major late promoter Embo Journal. 5: 2923-2930. PMID 3792304 |
0.509 |
|
| 1983 |
Burton ZF, Gross CA, Watanabe KK, Burgess RR. The operon that encodes the sigma subunit of RNA polymerase also encodes ribosomal protein S21 and DNA primase in E. coli K12 Cell. 32: 335-349. PMID 6186393 DOI: 10.1016/0092-8674(83)90453-1 |
0.411 |
|
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