Sydney Brenner - Related publications

Salk Institute for Biological Studies, La Jolla, CA, United States 
C. Elegans
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50 most relevant papers in past 60 days:
Year Citation  Score
2020 Lato DF, Golding GB. Spatial Patterns of Gene Expression in Bacterial Genomes. Journal of Molecular Evolution. 88: 510-520. PMID 32506154 DOI: 10.1007/s00239-020-09951-3   
2020 Turakhia Y, Chen HI, Marcovitz A, Bejerano G. A fully-automated method discovers loss of mouse-lethal and human-monogenic disease genes in 58 mammals. Nucleic Acids Research. PMID 32614390 DOI: 10.1093/nar/gkaa550   
2020 Kang SH, Kim B, Choi BS, Lee HO, Kim NH, Lee SJ, Kim HS, Shin MJ, Kim HW, Nam K, Kang KD, Kwon SJ, Oh TJ, Lee SC, Kim CK. Genome Assembly and Annotation of Soft-Shelled Adlay ( Variety ), a Cereal and Medicinal Crop in the Poaceae Family. Frontiers in Plant Science. 11: 630. PMID 32528499 DOI: 10.3389/fpls.2020.00630   
2020 Kong W, Sun T, Zhang C, Qiang Y, Li Y. Micro-Evolution Analysis Reveals Diverged Patterns of Polyol Transporters in Seven Gramineae Crops. Frontiers in Genetics. 11: 565. PMID 32636871 DOI: 10.3389/fgene.2020.00565   
2020 Wang P, Li LZ, Qin YL, Liang ZL, Li XT, Yin HQ, Liu LJ, Liu SJ, Jiang CY. Comparative Genomic Analysis Reveals the Metabolism and Evolution of the Thermophilic Archaeal Genus . Frontiers in Microbiology. 11: 1192. PMID 32655516 DOI: 10.3389/fmicb.2020.01192   
2020 Wang Z, Jia C, Wang JY, Miao HX, Liu JH, Chen C, Yang HX, Xu B, Jin Z. Genome-Wide Analysis of Basic Helix-Loop-Helix Transcription Factors to Elucidate Candidate Genes Related to Fruit Ripening and Stress in Banana ( L. AAA Group, cv. Cavendish). Frontiers in Plant Science. 11: 650. PMID 32536932 DOI: 10.3389/fpls.2020.00650   
2020 Su HG, Zhang XH, Wang TT, Wei WL, Wang YX, Chen J, Zhou YB, Chen M, Ma YZ, Xu ZS, Min DH. Genome-Wide Identification, Evolution, and Expression of GDSL-Type Esterase/Lipase Gene Family in Soybean. Frontiers in Plant Science. 11: 726. PMID 32670311 DOI: 10.3389/fpls.2020.00726   
2020 Wu S, Sun W, Xu Z, Zhai J, Li X, Li C, Zhang D, Wu X, Shen L, Chen J, Ren H, Dai X, Dai Z, Zhao Y, Chen L, et al. The genome sequence of star fruit (). Horticulture Research. 7: 95. PMID 32528707 DOI: 10.1038/s41438-020-0307-3   
2020 Lubna, Asaf S, Jan R, Khan AL, Lee IJ. Complete Chloroplast Genome Characterization of and Its Comparison with Related Species from Family Oxalidaceae. Plants (Basel, Switzerland). 9. PMID 32717796 DOI: 10.3390/plants9080928   
2020 Yamaguchi T, Uchida E, Okada T, Ozawa K, Onodera M, Kume A, Shimada T, Takahashi S, Tani K, Nasu Y, Mashimo T, Mizuguchi H, Mitani K, Maki K. Aspects of gene therapy products using current genome-editing technology in Japan. Human Gene Therapy. PMID 32731837 DOI: 10.1089/hum.2020.156   
2020 DuPai CD, Wilke CO, Davies BW. A Comprehensive Coexpression Network Analysis in Vibrio cholerae. Msystems. 5. PMID 32636337 DOI: 10.1128/mSystems.00550-20   
2020 Abdullah, Henriquez CL, Mehmood F, Shahzadi I, Ali Z, Waheed MT, Croat TB, Poczai P, Ahmed I. Comparison of Chloroplast Genomes among Species of Unisexual and Bisexual Clades of the Monocot Family Araceae. Plants (Basel, Switzerland). 9. PMID 32545339 DOI: 10.3390/plants9060737   
2020 Yan SM, McCoy RC. Archaic hominin genomics provides a window into gene expression evolution. Current Opinion in Genetics & Development. 62: 44-49. PMID 32615344 DOI: 10.1016/j.gde.2020.05.014   
2020 Ghorbani R, Zakipour Z, Alemzadeh A, Razi H. Genome-wide analysis of AP2/ERF transcription factors family in . Physiology and Molecular Biology of Plants : An International Journal of Functional Plant Biology. 26: 1463-1476. PMID 32647461 DOI: 10.1007/s12298-020-00832-z   
2020 Wu JQ, Dong C, Song L, Park RF. Long-Read-Based Genome Assembly and Comparative Genomics of the Wheat Leaf Rust Pathogen Identifies Candidates for Three Avirulence Genes. Frontiers in Genetics. 11: 521. PMID 32582280 DOI: 10.3389/fgene.2020.00521   
2020 Campos TL, Korhonen PK, Sternberg PW, Gasser RB, Young ND. Predicting gene essentiality in by feature engineering and machine-learning. Computational and Structural Biotechnology Journal. 18: 1093-1102. PMID 32489524 DOI: 10.1016/j.csbj.2020.05.008   
2020 Natri HM, Bobowik KS, Kusuma P, Crenna Darusallam C, Jacobs GS, Hudjashov G, Lansing JS, Sudoyo H, Banovich NE, Cox MP, Gallego Romero I. Genome-wide DNA methylation and gene expression patterns reflect genetic ancestry and environmental differences across the Indonesian archipelago. Plos Genetics. 16: e1008749. PMID 32453742 DOI: 10.1371/journal.pgen.1008749   
2020 Duarte CM, Ngugi DK, Alam I, Pearman J, Kamau A, Eguiluz VM, Gojobori T, Acinas SG, Gasol JM, Bajic V, Irigoien X. Sequencing Effort Dictates Gene Discovery in Marine Microbial Metagenomes. Environmental Microbiology. PMID 32743860 DOI: 10.1111/1462-2920.15182   
2020 Li L, Cardoso JCR, Félix RC, Mateus AP, Canário AVM, Power DM. Fish lysozyme gene family evolution and divergent function in early development. Developmental and Comparative Immunology. 103772. PMID 32730854 DOI: 10.1016/j.dci.2020.103772   
2020 Wang S, Zhang R, Shi Z, Zhao Y, Su A, Wang Y, Xing J, Ge J, Li C, Wang X, Wang J, Sun X, Liu Q, Chen Y, Zhang Y, et al. Identification and Fine Mapping of , a Southern Corn Rust Resistance Gene in Maize. Frontiers in Plant Science. 11: 1057. PMID 32733529 DOI: 10.3389/fpls.2020.01057   
2020 Wu YA, Gao JW, Cheng XF, Xie M, Yuan XP, Liu D, Song R. Characterization and comparative analysis of the complete mitochondrial genome of Tsin, 1933 (Digenea), the first for a member of the family Azygiidae. Zookeys. 945: 1-16. PMID 32714004 DOI: 10.3897/zookeys.945.49681   
2020 Oulo MA, Yang JX, Dong X, Wanga VO, Mkala EM, Munyao JN, Onjolo VO, Rono PC, Hu GW, Wang QF. Complete Chloroplast Genome of the only Cactus with Natural Distribution in the Old World: Genome Rearrangement, Intron Gain and Loss, and Implications for Phylogenetic Studies. Plants (Basel, Switzerland). 9. PMID 32752116 DOI: 10.3390/plants9080979   
2020 Yang C, Ou D, Guo W, Lü J, Guo C, Qiu B, Pan H. De Novo Assembly of the Asian Citrus Psyllid (Hemiptera: Psyllidae) Transcriptome across Developmental Stages. International Journal of Molecular Sciences. 21. PMID 32674498 DOI: 10.3390/ijms21144974   
2020 Francis WR, Canfield DE. Very few sites can reshape the inferred phylogenetic tree. Peerj. 8: e8865. PMID 32714649 DOI: 10.7717/peerj.8865   
2020 Tonkin-Hill G, MacAlasdair N, Ruis C, Weimann A, Horesh G, Lees JA, Gladstone RA, Lo S, Beaudoin C, Floto RA, Frost SDW, Corander J, Bentley SD, Parkhill J. Producing polished prokaryotic pangenomes with the Panaroo pipeline. Genome Biology. 21: 180. PMID 32698896 DOI: 10.1186/s13059-020-02090-4   
2020 Deschamps-Francoeur G, Simoneau J, Scott MS. Handling multi-mapped reads in RNA-seq. Computational and Structural Biotechnology Journal. 18: 1569-1576. PMID 32637053 DOI: 10.1016/j.csbj.2020.06.014   
2020 Liu S, Zeng Z, Zeng FC, Du MZ. [Comprehensive re-annotation of protein-coding genes for prokaryotic genomes by Z-curve and similarity-based methods]. Yi Chuan = Hereditas. 42: 691-702. PMID 32694108 DOI: 10.16288/j.yczz.20-022   
2020 Hong WJ, Kim YJ, Kim EJ, Kumar ANC, Moon S, Gho YS, Yoou MH, Kim ST, Jung KH. CAFRI-Rice: CRISPR Applicable Functional Redundancy Inspector to Accelerate Functional Genomics in Rice. The Plant Journal : For Cell and Molecular Biology. PMID 32652789 DOI: 10.1111/tpj.14926   
2020 Li F, Bian L, Ge J, Han F, Zhihong L, Xuming L, Yongsheng L, Zhishu L, Huilai S, Liu C, Qing C, Bin L, Shengnong Z, Jiancheng H, Dafeng X, et al. Chromosome-level genome assembly of the East Asian common octopus (Octopus sinensis) using PacBio sequencing and Hi-C technology. Molecular Ecology Resources. PMID 32603549 DOI: 10.1111/1755-0998.13216   
2020 Huang L, Liu H, Wu J, Zhao R, Li Y, Melaku G, Zhang S, Huang G, Bao Y, Ning M, Chen B, Gong Y, Hu Q, Zhang J, Zhang Y. Evolution of Plant Architecture in Driven by the Locus. Frontiers in Plant Science. 11: 876. PMID 32655603 DOI: 10.3389/fpls.2020.00876   
2020 Xia C, Lei Y, Wang M, Chen W, Chen X. An Avirulence Gene Cluster in the Wheat Stripe Rust Pathogen (Puccinia striiformis f. sp. ) Identified through Genetic Mapping and Whole-Genome Sequencing of a Sexual Population. Msphere. 5. PMID 32554716 DOI: 10.1128/mSphere.00128-20   
2020 Triant DA, Le Tourneau JJ, Diesh CM, Unni DR, Shamimuzzaman M, Walsh AT, Gardiner J, Goldkamp AK, Li Y, Nguyen HN, Roberts C, Zhao Z, Alexander LJ, Decker JE, Schnabel RD, et al. Using online tools at the Bovine Genome Database to manually annotate genes in the new reference genome. Animal Genetics. PMID 32537769 DOI: 10.1111/age.12962   
2020 Damchuay K, Longya A, Sriwongchai T, Songkumarn P, Parinthawong N, Darwell K, Talumphai S, Tasanasuwan P, Jantasuriyarat C. High nucleotide sequence variation of avirulent gene, , in Thai rice blast fungus population. Journal of Genetics. 99. PMID 32529988   
2020 Touchon M, Perrin A, de Sousa JAM, Vangchhia B, Burn S, O'Brien CL, Denamur E, Gordon D, Rocha EP. Phylogenetic background and habitat drive the genetic diversification of Escherichia coli. Plos Genetics. 16: e1008866. PMID 32530914 DOI: 10.1371/journal.pgen.1008866   
2020 Stamboulian M, Guerrero RF, Hahn MW, Radivojac P. The ortholog conjecture revisited: the value of orthologs and paralogs in function prediction. Bioinformatics (Oxford, England). 36: i219-i226. PMID 32657391 DOI: 10.1093/bioinformatics/btaa468   
2020 Lian S, Zhou Y, Liu Z, Gong A, Cheng L. The differential expression patterns of paralogs in response to stresses indicate expression and sequence divergences. Bmc Plant Biology. 20: 277. PMID 32546126 DOI: 10.1186/s12870-020-02460-x   
2020 Li W, Zhang QJ, Zhu T, Tong Y, Li K, Shi C, Zhang Y, Liu YL, Jiang JJ, Liu Y, Xia EH, Huang H, Zhang LP, Zhang D, Shi C, et al. Draft genomes of two outcrossing wild rice, and , reveal genomic features associated with mating-system evolution. Plant Direct. 4: e00232. PMID 32537559 DOI: 10.1002/pld3.232   
2020 Liu F, Fan W, Yang JB, Xiang CL, Mower JP, Li DZ, Zhu A. Episodic and GC-biased bursts of intragenomic and interspecific synonymous divergence in Ajugoideae (Lamiaceae) mitogenomes. The New Phytologist. PMID 32558926 DOI: 10.1111/nph.16753   
2020 Lv Q, Qiu J, Liu J, Li Z, Zhang W, Wang Q, Fang J, Pan J, Chen Z, Cheng W, Barker MS, Huang X, Wei X, Cheng K. The Chimonanthus salicifolius genome provides insight into magnoliids evolution and flavonoids biosynthesis. The Plant Journal : For Cell and Molecular Biology. PMID 32524692 DOI: 10.1111/tpj.14874   
2020 Kwak W, Han YH, Seol D, Kim H, Ahn H, Jeong M, Kang J, Kim H, Kim TH. Complete Genome of KY Using Flongle Provides Insight Into the Genetic Background of Optimal Adaption to Vaginal Econiche. Frontiers in Microbiology. 11: 1048. PMID 32528446 DOI: 10.3389/fmicb.2020.01048   
2020 Kim J, Kang SH, Park SG, Yang TJ, Lee Y, Kim OT, Chung O, Lee J, Choi JP, Kwon SJ, Lee K, Ahn BO, Lee DJ, Yoo SI, Shin IG, et al. Whole-genome, transcriptome, and methylome analyses provide insights into the evolution of platycoside biosynthesis in , a medicinal plant. Horticulture Research. 7: 112. PMID 32637140 DOI: 10.1038/s41438-020-0329-x   
2020 Wu S, Guyot R, Bocs S, Droc G, Oktavia F, Hu S, Tang C, Montoro P, Leclercq J. Structural and Functional Annotation of Transposable Elements Revealed a Potential Regulation of Genes Involved in Rubber Biosynthesis by TE-Derived siRNA Interference in . International Journal of Molecular Sciences. 21. PMID 32545790 DOI: 10.3390/ijms21124220   
2020 Zile K, Dessimoz C, Wurm Y, Masel J. Only a single taxonomically restricted gene family in the Drosophila melanogaster subgroup can be identified with high confidence. Genome Biology and Evolution. PMID 32589737 DOI: 10.1093/gbe/evaa127   
2020 Zhang Y, Gong L, Lu X, Jiang L, Liu B, Liu L, Lü Z, Li P, Zhang X. Gene rearrangements in the mitochondrial genome of Chiromantes eulimene (Brachyura: Sesarmidae) and phylogenetic implications for Brachyura. International Journal of Biological Macromolecules. PMID 32590088 DOI: 10.1016/j.ijbiomac.2020.06.196   
2020 Zhang Z, Gou X, Xun H, Bian Y, Ma X, Li J, Li N, Gong L, Feldman M, Liu B, Levy AA. Homoeologous exchanges occur through intragenic recombination generating novel transcripts and proteins in wheat and other polyploids. Proceedings of the National Academy of Sciences of the United States of America. PMID 32518116 DOI: 10.1073/pnas.2003505117   
2020 Savory EA, Weisberg AJ, Stevens DM, Creason AL, Fuller SL, Pearce EM, Chang JH. Phytopathogenic Have Diverse Plasmids With Few Conserved Virulence Functions. Frontiers in Microbiology. 11: 1022. PMID 32523572 DOI: 10.3389/fmicb.2020.01022   
2020 McGirr JA, Martin CH. Ecological divergence in sympatry causes gene misexpression in hybrids. Molecular Ecology. PMID 32557903 DOI: 10.1111/mec.15512   
2020 Yang L, Zhu Y, Peng Z, Ding Y, Jie K, Wang Z, Peng Y, Tang X, Wang X, Chen H, Tan C. Comparative Genome Analysis of a Pathogenic Isolate WH13013 from Pig Reveals Potential Genes Involve in Bacterial Adaptions and Pathogenesis. Veterinary Sciences. 7. PMID 32512708 DOI: 10.3390/vetsci7020074   
2020 Sarah B, Laurent F, Heinz MS. Genome assembly of the ragweed leaf beetle: a step forward to better predict rapid evolution of a weed biocontrol agent to environmental novelties. Genome Biology and Evolution. PMID 32428241 DOI: 10.1093/gbe/evaa102   
2020 Ledger L, Eidt J, Cai HY. Identification of Antimicrobial Resistance-Associated Genes through Whole Genome Sequencing of Isolates with Different Antimicrobial Resistances. Pathogens (Basel, Switzerland). 9. PMID 32707642 DOI: 10.3390/pathogens9070588