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Samuel Neuenschwander - Publications

Affiliations: 
Ecology and Evolution Université de Lausanne, Lausanne, VD, Switzerland 
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22 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Neuenschwander S, Cruz Dávalos DI, Anchieri L, Sousa da Mota B, Bozzi D, Rubinacci S, Delaneau O, Rasmussen S, Malaspinas AS. Mapache: a flexible pipeline to map ancient DNA. Bioinformatics (Oxford, England). PMID 36637197 DOI: 10.1093/bioinformatics/btad028  0.626
2022 Arizmendi Cárdenas YO, Neuenschwander S, Malaspinas AS. Benchmarking metagenomics classifiers on ancient viral DNA: a simulation study. Peerj. 10: e12784. PMID 35356467 DOI: 10.7717/peerj.12784  0.668
2021 Clemente F, Unterländer M, Dolgova O, Amorim CEG, Coroado-Santos F, Neuenschwander S, Ganiatsou E, Cruz Dávalos DI, Anchieri L, Michaud F, Winkelbach L, Blöcher J, Arizmendi Cárdenas YO, Sousa da Mota B, Kalliga E, et al. The genomic history of the Aegean palatial civilizations. Cell. PMID 33930288 DOI: 10.1016/j.cell.2021.03.039  0.526
2020 Gauthier J, Pajkovic M, Neuenschwander S, Kaila L, Schmid S, Orlando L, Alvarez N. Museomics identifies genetic erosion in two butterfly species across the 20th century in Finland. Molecular Ecology Resources. PMID 32304133 DOI: 10.1111/1755-0998.13167  0.364
2020 Ducrest AL, Neuenschwander S, Schmid-Siegert E, Pagni M, Train C, Dylus D, Nevers Y, Warwick Vesztrocy A, San-Jose LM, Dupasquier M, Dessimoz C, Xenarios I, Roulin A, Goudet J. New genome assembly of the barn owl (). Ecology and Evolution. 10: 2284-2298. PMID 32184981 DOI: 10.1002/Ece3.5991  0.479
2019 Duroy PO, Bosshard S, Schmid-Siegert E, Neuenschwander S, Arib G, Lemercier P, Masternak J, Roesch L, Buron F, Girod PA, Xenarios I, Mermod N. Characterization and mutagenesis of Chinese hamster ovary cells endogenous retroviruses to inactivate viral particle release. Biotechnology and Bioengineering. PMID 31631325 DOI: 10.1002/Bit.27200  0.305
2019 Neuenschwander S, Michaud F, Goudet J. QuantiNemo 2: a Swiss knife to simulate complex demographic and genetic scenarios, forward and backward in time. Bioinformatics (Oxford, England). 35: 886-888. PMID 30816926 DOI: 10.1093/Bioinformatics/Bty737  0.726
2018 Saunders PA, Neuenschwander S, Perrin N. Sex chromosome turnovers and genetic drift: A simulation study. Journal of Evolutionary Biology. PMID 29923246 DOI: 10.1111/Jeb.13336  0.345
2018 Kanitz R, Guillot EG, Antoniazza S, Neuenschwander S, Goudet J. Complex genetic patterns in human arise from a simple range-expansion model over continental landmasses. Plos One. 13: e0192460. PMID 29466398 DOI: 10.1371/Journal.Pone.0192460  0.372
2018 Schmid S, Neuenschwander S, Pitteloud C, Heckel G, Pajkovic M, Arlettaz R, Alvarez N. Spatial and temporal genetic dynamics of the grasshopperrevealed by museum genomics. Ecology and Evolution. 8: 1480-1495. PMID 29435226 DOI: 10.1002/Ece3.3699  0.673
2016 Kostyrko K, Neuenschwander S, Junier T, Regamey A, Iseli C, Schmid-Siegert E, Bosshard S, Majocchi S, Le Fourn V, Girod PA, Xenarios I, Mermod N. MAR-mediated transgene integration into permissive chromatin and increased expression by recombination pathway engineering. Biotechnology and Bioengineering. PMID 27575535 DOI: 10.1002/Bit.26086  0.379
2016 Rougemont Q, Roux C, Neuenschwander S, Goudet J, Launey S, Evanno G. Reconstructing the demographic history of divergence between European river and brook lampreys using approximate Bayesian computations. Peerj. 4: e1910. PMID 27077007 DOI: 10.7717/Peerj.1910  0.38
2014 Fodor A, Segura V, Denis M, Neuenschwander S, Fournier-Level A, Chatelet P, Homa FA, Lacombe T, This P, Le Cunff L. Genome-wide prediction methods in highly diverse and heterozygous species: proof-of-concept through simulation in grapevine. Plos One. 9: e110436. PMID 25365338 DOI: 10.1371/Journal.Pone.0110436  0.42
2014 Antoniazza S, Kanitz R, Neuenschwander S, Burri R, Gaigher A, Roulin A, Goudet J. Natural selection in a postglacial range expansion: the case of the colour cline in the European barn owl. Molecular Ecology. 23: 5508-23. PMID 25294501 DOI: 10.1111/Mec.12957  0.363
2014 Pajkovic M, Lappe S, Barman R, Parisod C, Neuenschwander S, Goudet J, Alvarez N, Guadagnuolo R, Felber F, Arrigo N. Wheat alleles introgress into selfing wild relatives: empirical estimates from approximate Bayesian computation in Aegilops triuncialis. Molecular Ecology. 23: 5089-101. PMID 25223217 DOI: 10.1111/Mec.12918  0.352
2014 Wiedemar N, Tetens J, Jagannathan V, Menoud A, Neuenschwander S, Bruggmann R, Thaller G, Drögemüller C. Independent polled mutations leading to complex gene expression differences in cattle. Plos One. 9: e93435. PMID 24671182 DOI: 10.1371/Journal.Pone.0093435  0.366
2013 Delplancke M, Alvarez N, Benoit L, Espíndola A, I Joly H, Neuenschwander S, Arrigo N. Evolutionary history of almond tree domestication in the Mediterranean basin. Molecular Ecology. 22: 1092-104. PMID 23189975 DOI: 10.1111/Mec.12129  0.39
2010 Wegmann D, Leuenberger C, Neuenschwander S, Excoffier L. ABCtoolbox: a versatile toolkit for approximate Bayesian computations. Bmc Bioinformatics. 11: 116. PMID 20202215 DOI: 10.1186/1471-2105-11-116  0.704
2008 Neuenschwander S, Largiadèr CR, Ray N, Currat M, Vonlanthen P, Excoffier L. Colonization history of the Swiss Rhine basin by the bullhead (Cottus gobio): inference under a Bayesian spatially explicit framework. Molecular Ecology. 17: 757-72. PMID 18194169 DOI: 10.1111/J.1365-294X.2007.03621.X  0.753
2008 Fagundes NJR, Ray N, Beaumont M, Neuenschwander S, Salzano FM, Bonatto SL, Excoffier L. Reply to Garrigan and Hammer: Ancient lineages and assimilation [2] Proceedings of the National Academy of Sciences of the United States of America. 105: E4. DOI: 10.1073/Pnas.0711261105  0.675
2007 Fagundes NJ, Ray N, Beaumont M, Neuenschwander S, Salzano FM, Bonatto SL, Excoffier L. Statistical evaluation of alternative models of human evolution. Proceedings of the National Academy of Sciences of the United States of America. 104: 17614-9. PMID 17978179 DOI: 10.1073/Pnas.0708280104  0.725
2007 Vonlanthen P, Excoffier L, Bittner D, Persat H, Neuenschwander S, Largiadèr CR. Genetic analysis of potential postglacial watershed crossings in Central Europe by the bullhead (Cottus gobio L.). Molecular Ecology. 16: 4572-84. PMID 17908217 DOI: 10.1111/J.1365-294X.2007.03531.X  0.554
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