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Xueyu Song - Publications

Affiliations: 
Chemistry Iowa State University, Ames, IA, United States 
Area:
Physical Chemistry, General Biophysics
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52 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Ballal D, Lu Q, Raju M, Song X. Studying vapor-liquid transition using a generalized ensemble. The Journal of Chemical Physics. 151: 134108. PMID 31594333 DOI: 10.1063/1.5116252  0.362
2018 Gunawardana KGSH, Song X. Theoretical prediction of crystallization kinetics of a supercooled Lennard-Jones fluid. The Journal of Chemical Physics. 148: 204506. PMID 29865809 DOI: 10.1063/1.5021944  0.388
2017 Xiao T, Song X. A molecular Debye-Hückel theory of solvation in polar fluids: An extension of the Born model. The Journal of Chemical Physics. 147: 214502. PMID 29221403 DOI: 10.1063/1.4998255  0.315
2017 Xiao T, Song X. A molecular Debye-Hückel theory and its applications to electrolyte solutions: The size asymmetric case. The Journal of Chemical Physics. 146: 124118. PMID 28388119 DOI: 10.1063/1.4978895  0.324
2015 Hu N, Wang Z, Song X, Wei L, Kim BS, Freedman ND, Baek J, Burdette L, Chang J, Chung C, Dawsey SM, Ding T, Gao YT, Giffen C, Han Y, et al. Genome-wide association study of gastric adenocarcinoma in Asia: a comparison of associations between cardia and non-cardia tumours. Gut. PMID 26129866 DOI: 10.1136/Gutjnl-2015-309340  0.416
2015 Gunawardana KG, Song X. Free Energy Calculations of Crystalline Hard Sphere Complexes Using Density Functional Theory. The Journal of Physical Chemistry. B. 119: 9160-6. PMID 25496266 DOI: 10.1021/Jp5090907  0.373
2014 Gunawardana KG, Wilson SR, Mendelev MI, Song X. Theoretical calculation of the melting curve of Cu-Zr binary alloys. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 90: 052403. PMID 25493799 DOI: 10.1103/Physreve.90.052403  0.38
2014 Xiao T, Song X. A molecular Debye-Hückel approach to the reorganization energy of electron transfer reactions in an electric cell. The Journal of Chemical Physics. 141: 134104. PMID 25296781 DOI: 10.1063/1.4896763  0.344
2013 Xiao T, Song X. Reorganization energy of electron transfer processes in ionic fluids: a molecular Debye-Hückel approach. The Journal of Chemical Physics. 138: 114105. PMID 23534625 DOI: 10.1063/1.4794790  0.361
2013 Kim SY, Kang JW, Song X, Kim BK, Yoo YD, Kwon YT, Lee YJ. Role of the IL-6-JAK1-STAT3-Oct-4 pathway in the conversion of non-stem cancer cells into cancer stem-like cells. Cellular Signalling. 25: 961-9. PMID 23333246 DOI: 10.1016/J.Cellsig.2013.01.007  0.42
2012 Warshavsky VB, Song X. Perturbation theory of solid-liquid interfacial free energies of bcc metals. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 86: 031602. PMID 23030924 DOI: 10.1103/Physreve.86.031602  0.376
2011 Xiao T, Song X. A molecular Debye-Hückel theory and its applications to electrolyte solutions. The Journal of Chemical Physics. 135: 104104. PMID 21932873 DOI: 10.1063/1.3632052  0.359
2011 Kim B, Song X. Calculations of the second virial coefficients of protein solutions with an extended fast multipole method. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 83: 011915. PMID 21405721 DOI: 10.1103/Physreve.83.011915  0.554
2011 Bose S, Adhikary R, Barnes CA, Fulton DB, Hargrove MS, Song X, Petrich JW. Comparison of the dielectric response obtained from fluorescence upconversion measurements and molecular dynamics simulations for coumarin 153-apomyoglobin complexes and structural analysis of the complexes by NMR and fluorescence methods. The Journal of Physical Chemistry. A. 115: 3630-41. PMID 20446696 DOI: 10.1021/Jp1008225  0.32
2010 Warshavsky VB, Song X. Perturbation theory for solid-liquid interfacial free energies. Journal of Physics. Condensed Matter : An Institute of Physics Journal. 22: 364112. PMID 21386528 DOI: 10.1088/0953-8984/22/36/364112  0.392
2010 Kim B, Song J, Song X. Calculations of the binding affinities of protein-protein complexes with the fast multipole method. The Journal of Chemical Physics. 133: 095101. PMID 20831336 DOI: 10.1063/1.3474624  0.548
2009 Song X. Solvation dynamics in ionic fluids: an extended Debye-Hückel dielectric continuum model. The Journal of Chemical Physics. 131: 044503. PMID 19655890 DOI: 10.1063/1.3187147  0.376
2009 Bose S, Adhikary R, Mukherjee P, Song X, Petrich JW. Considerations for the construction of the solvation correlation function and implications for the interpretation of dielectric relaxation in proteins. The Journal of Physical Chemistry. B. 113: 11061-8. PMID 19445455 DOI: 10.1021/Jp9004345  0.313
2009 Warshavsky VB, Song X. Phase diagrams of binary alloys calculated from a density functional theory Physical Review B. 79. DOI: 10.1103/Physrevb.79.014101  0.327
2008 Warshavsky VB, Song X. Fundamental measure density functional theory studies on the freezing of binary hard-sphere and Lennard-Jones mixtures. The Journal of Chemical Physics. 129: 034506. PMID 18647030 DOI: 10.1063/1.2953329  0.391
2008 Warshavsky VB, Song X. Theoretical studies of the correlations in moderately asymmetric binary hard-sphere solid mixtures. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 77: 051106. PMID 18643025 DOI: 10.1103/Physreve.77.051106  0.356
2007 Halder M, Mukherjee P, Bose S, Hargrove MS, Song X, Petrich JW. Solvation dynamics in protein environments: comparison of fluorescence upconversion measurements of coumarin 153 in monomeric hemeproteins with molecular dynamics simulations. The Journal of Chemical Physics. 127: 055101. PMID 17688362 DOI: 10.1063/1.2753495  0.349
2006 Mu Y, Song X. Crystal-melt interfacial free energies of hard-dumbbell systems. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 74: 031611. PMID 17025647 DOI: 10.1103/Physreve.74.031611  0.315
2006 Headley LS, Mukherjee P, Anderson JL, Ding R, Halder M, Armstrong DW, Song X, Petrich JW. Dynamic solvation in imidazolium-based ionic liquids on short time scales. The Journal of Physical Chemistry. A. 110: 9549-54. PMID 16884187 DOI: 10.1021/Jp0606964  0.339
2006 Halder M, Headley LS, Mukherjee P, Song X, Petrich JW. Experimental and theoretical investigations of solvation dynamics of ionic fluids: appropriateness of dielectric theory and the role of DC conductivity. The Journal of Physical Chemistry. A. 110: 8623-6. PMID 16836422 DOI: 10.1021/Jp062936L  0.38
2006 Warshavsky VB, Song X. Fundamental-measure density functional theory study of the crystal-melt interface of the hard sphere system. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 73: 031110. PMID 16605503 DOI: 10.1103/Physreve.73.031110  0.351
2006 Mu Y, Song X. Calculations of crystal-melt interfacial free energies by nonequilibrium work measurements. The Journal of Chemical Physics. 124: 034712. PMID 16438605 DOI: 10.1063/1.2159474  0.348
2005 Mu Y, Houk A, Song X. Anisotropic interfacial free energies of the hard-sphere crystal-melt interfaces. The Journal of Physical Chemistry. B. 109: 6500-4. PMID 16851729 DOI: 10.1021/Jp046289E  0.337
2004 Song X, Zhao X. The van der Waals interaction between protein molecules in an electrolyte solution. The Journal of Chemical Physics. 120: 2005-9. PMID 15268335 DOI: 10.1063/1.1634955  0.335
2004 Warshavsky VB, Song X. Calculations of free energies in liquid and solid phases: fundamental measure density-functional approach. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 69: 061113. PMID 15244546 DOI: 10.1103/Physreve.69.061113  0.392
2004 Chowdhury PK, Halder M, Sanders L, Arnold RA, Liu Y, Armstrong DW, Kundu S, Hargrove MS, Song X, Petrich JW. The complex of apomyoglobin with the fluorescent dye coumarin 153. Photochemistry and Photobiology. 79: 440-6. PMID 15191053 DOI: 10.1562/Ra-020R.1  0.326
2004 Chowdhury PK, Halder M, Sanders L, Calhoun T, Anderson JL, Armstrong DW, Song X, Petrich JW. Dynamic solvation in room-temperature ionic liquids Journal of Physical Chemistry B. 108: 10245-10255. DOI: 10.1021/Jp0376828  0.332
2003 Song X, Morris JR. Accurate method to calculate liquid and solid free energies for embedded atom potentials Physical Review B. 67. DOI: 10.1103/Physrevb.67.092203  0.396
2003 Song X. The extent of anisotropic interactions between protein molecules in electrolyte solutions Molecular Simulation. 29: 643-647. DOI: 10.1080/0892702031000103176  0.336
2003 Morris JR, Song X. The anisotropic free energy of the Lennard-Jones crystal-melt interface The Journal of Chemical Physics. 119: 3920-3925. DOI: 10.1063/1.1591725  0.373
2002 Song X. Role of anisotropic interactions in protein crystallization. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 66: 011909. PMID 12241386 DOI: 10.1103/Physreve.66.011909  0.332
2002 Song X. An inhomogeneous model of protein dielectric properties: Intrinsic polarizabilities of amino acids Journal of Chemical Physics. 116: 9359-9363. DOI: 10.1063/1.1474582  0.345
2002 Morris JR, Song X. The melting lines of model systems calculated from coexistence simulations The Journal of Chemical Physics. 116: 9352-9358. DOI: 10.1063/1.1474581  0.366
2002 Woo H, Song X. Self-consistent theory of orientational order and fluid–solid equilibria in weakly anisotropic fluids The Journal of Chemical Physics. 116: 4587-4596. DOI: 10.1063/1.1452111  0.392
2001 Woo HJ, Song X. Freezing and orientational order in weakly anisotropic fluids. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 63: 051501. PMID 11414903 DOI: 10.1103/Physreve.63.051501  0.382
2001 Woo H, Song X. Functional integral formulations for classical fluids The Journal of Chemical Physics. 114: 5637-5641. DOI: 10.1063/1.1353553  0.314
2000 Song X, Chandler D. Dielectric response of a polarizable system with quenched disorder Physical Review. E, Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics. 62: 7949-56. PMID 11138078 DOI: 10.1103/Physreve.62.7949  0.469
2000 Yu ZG, Song X, Chandler D. Polarizability fluctuations in dielectric materials with quenched disorder Physical Review. E, Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics. 62: 4698-701. PMID 11089009 DOI: 10.1103/Physreve.62.4698  0.423
1999 Lang MJ, Jordanides XJ, Song X, Fleming GR. Aqueous solvation dynamics studied by photon echo spectroscopy The Journal of Chemical Physics. 110: 5884-5892. DOI: 10.1063/1.478488  0.377
1999 Wang H, Song X, Chandler D, Miller WH. Semiclassical study of electronically nonadiabatic dynamics in the condensed-phase: Spin-boson problem with Debye spectral density The Journal of Chemical Physics. 110: 4828-4840. DOI: 10.1063/1.478388  0.376
1999 Wang H, Song X, Chandler D, Miller WH. Semiclassical study of electronically nonadiabatic dynamics in the condensed-phase: Spin-boson problem with Debye spectral density Journal of Chemical Physics. 110: 4828-4840. DOI: 10.1063/1.478388  0.499
1999 Jordanides XJ, Lang MJ, Song X, Fleming GR. Solvation Dynamics in Protein Environments Studied by Photon Echo Spectroscopy The Journal of Physical Chemistry B. 103: 7995-8005. DOI: 10.1021/Jp9910993  0.324
1998 Song X, Chandler D. Dielectric solvation dynamics of molecules of arbitrary shape and charge distribution The Journal of Chemical Physics. 108: 2594-2600. DOI: 10.1063/1.475644  0.5
1997 Hsu C, Song X, Marcus RA. Time-Dependent Stokes Shift and Its Calculation from Solvent Dielectric Dispersion Data The Journal of Physical Chemistry B. 101: 2546-2551. DOI: 10.1021/Jp9630885  0.362
1996 Song X, Chandler D, Marcus RA. Gaussian Field Model of Dielectric Solvation Dynamics The Journal of Physical Chemistry. 100: 11954-11959. DOI: 10.1021/Jp960887E  0.495
1993 Song X, Marcus RA. Quantum correction for electron transfer rates. Comparison of polarizable versus nonpolarizable descriptions of solvent The Journal of Chemical Physics. 99: 7768-7773. DOI: 10.1063/1.465654  0.329
1993 Song X, Stuchebrukhov AA. Outer-sphere electron transfer in polar solvents: Quantum scaling of strongly interacting systems The Journal of Chemical Physics. 99: 969-978. DOI: 10.1063/1.465310  0.31
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